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Maniphest T23815

Refactor seeding and termination in streamline tractography
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Description

unified mask, 5TT, parcellation concept
enable surfaces
in this context, integrate urface enhanced tractography?

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neher renamed this task from Refactor seed ing and termination in streamline tractography to Refactor seeding and termination in streamline tractography.Nov 23 2017, 9:52 AM
neher created this task.
neher added a comment.Nov 28 2017, 1:22 PM

Seed possibilities:

  1. Complete Volume
  2. Inside Tractography Mask
  3. Inside Seed Mask
  4. Inside certain labels of multi-label image
  5. Depending on channel of 4D tissue probability image
  6. At mesh vertices

Predefine fiber stubs:

  1. Along mesh normal
  2. Along trajectory of mesh shrinkage (Max's ISMRM abstract)
  3. In direction of closest WM voxel

Accept fiber termination/terminate fibers:

  1. Everywhere
  2. In stop-mask voxels
  3. Inside certain labels of multi-label image
  4. Depending on channel of 4D tissue probability image
  5. At intersection with mesh
neher added a comment.Dec 19 2017, 9:54 AM

Pushed new branch T23815-FiberTermination.

neher mentioned this in rMITK44e59fb85a85: Merge branch 'T23815-FiberTermination'.Dec 19 2017, 3:45 PM
neher closed this task as Resolved.Jan 25 2018, 4:13 PM
MITK · MIC · IMSY · DKFZ