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neher (Peter Neher)
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Projects (7)
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User Since
Aug 1 2016, 12:10 PM (128 w, 6 d)

Recent Activity
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Wed, Jan 16

neher closed T25810: [MITK Diffusion] Check gradient handling between original and working as Resolved.
Wed, Jan 16, 5:23 PM · MITK
neher triaged T25846: [MITK Diffusion] Head motion + distortions is super slow as High priority.
Wed, Jan 16, 5:04 PM · MITK

Fri, Jan 11

neher committed rMITK19010687082e: Merge branch 'T25839-FiberGenTest' (authored by neher).
Merge branch 'T25839-FiberGenTest'
Fri, Jan 11, 11:28 AM
neher committed rMITK3a88b2d49792: Fix seed for all runs (authored by neher).
Fix seed for all runs
Fri, Jan 11, 11:27 AM
neher committed rMITKebde39fe96c9: Merge branch 'T25839-FiberGenTest' (authored by neher).
Merge branch 'T25839-FiberGenTest'
Fri, Jan 11, 10:48 AM
neher committed rMITK7c36373bdfe0: Fix seed for fiber generation (authored by neher).
Fix seed for fiber generation
Fri, Jan 11, 10:47 AM
neher added a comment to T25839: [MITK Diffusion] fix fiber generation test.

Pushed new branch T25839-FiberGenTest.

Fri, Jan 11, 10:47 AM · MITK
neher triaged T25839: [MITK Diffusion] fix fiber generation test as Normal priority.
Fri, Jan 11, 10:46 AM · MITK
neher closed T25838: [MITK Diffusion] Dicom import crash with erlangen data as Resolved.
Fri, Jan 11, 10:19 AM · MITK
neher committed rMITKfab2fbcf4581: Merge branch 'T25838-DicomFred' (authored by neher).
Merge branch 'T25838-DicomFred'
Fri, Jan 11, 10:18 AM
neher committed rMITK223763bdba50: Checking for empty frames list (authored by neher).
Checking for empty frames list
Fri, Jan 11, 10:17 AM
neher added a comment to T25838: [MITK Diffusion] Dicom import crash with erlangen data.

Pushed new branch T25838-DicomFred.

Fri, Jan 11, 10:17 AM · MITK
neher triaged T25838: [MITK Diffusion] Dicom import crash with erlangen data as Normal priority.
Fri, Jan 11, 10:13 AM · MITK

Tue, Jan 8

neher closed T25821: [MITK Diffusion] Disable python for diffusion release on windows as Resolved.
Tue, Jan 8, 8:03 PM · MITK
neher committed rMITK9d369f81da85: Merge branch 'T25821-DisableWinPython' (authored by neher).
Merge branch 'T25821-DisableWinPython'
Tue, Jan 8, 7:07 PM
neher committed rMITK80fffa4a32ef: One randgen (authored by neher).
One randgen
Tue, Jan 8, 7:07 PM
neher reopened T25821: [MITK Diffusion] Disable python for diffusion release on windows as "Open".
Tue, Jan 8, 7:06 PM · MITK
neher closed T25821: [MITK Diffusion] Disable python for diffusion release on windows as Resolved.
Tue, Jan 8, 4:12 PM · MITK
neher committed rMITKcc4f65c717d6: Merge branch 'T25821-DisableWinPython' (authored by neher).
Merge branch 'T25821-DisableWinPython'
Tue, Jan 8, 4:11 PM
neher committed rMITK3061c85c3356: Fix UID issue in diffusion (authored by neher).
Fix UID issue in diffusion
Tue, Jan 8, 4:10 PM
neher committed rMITK4c3a6426b526: Merge branch 'T25821-DisableWinPython' (authored by neher).
Merge branch 'T25821-DisableWinPython'
Tue, Jan 8, 3:51 PM
neher committed rMITK36a5aa09cb37: Only enabling python in diffusion release app when on linux (authored by neher).
Only enabling python in diffusion release app when on linux
Tue, Jan 8, 3:50 PM
neher added a comment to T25821: [MITK Diffusion] Disable python for diffusion release on windows.

Pushed new branch T25821-DisableWinPython.

Tue, Jan 8, 3:50 PM · MITK
neher closed T25819: [MITK Diffusion] Random phantoms seed as Resolved.
Tue, Jan 8, 3:32 PM · MITK
neher triaged T25821: [MITK Diffusion] Disable python for diffusion release on windows as Normal priority.
Tue, Jan 8, 3:31 PM · MITK
neher triaged T25819: [MITK Diffusion] Random phantoms seed as Normal priority.
Tue, Jan 8, 2:29 PM · MITK

Sat, Jan 5

neher committed rMITKc487113607cd: Merge branch 'T25810-FiberfoxOriginalGradients2' (authored by neher).
Merge branch 'T25810-FiberfoxOriginalGradients2'
Sat, Jan 5, 9:29 PM
neher committed rMITK0d7a8252ba67: Always initialize parameters with original gradients and than rotate (authored by neher).
Always initialize parameters with original gradients and than rotate
Sat, Jan 5, 9:02 PM
neher added a comment to T25810: [MITK Diffusion] Check gradient handling between original and working.

Pushed new branch T25810-FiberfoxOriginalGradients2.

Sat, Jan 5, 9:02 PM · MITK

Fri, Jan 4

neher committed rMITK6fbe15b487be: Merge branch 'T25810-FiberfoxOriginalGradients' (authored by neher).
Merge branch 'T25810-FiberfoxOriginalGradients'
Fri, Jan 4, 9:27 PM
neher committed rMITKd09f5094149f: Fiberfox initializes new dwis with original gradients to avoid reversion (authored by neher).
Fiberfox initializes new dwis with original gradients to avoid reversion
Fri, Jan 4, 9:26 PM
neher added a comment to T25810: [MITK Diffusion] Check gradient handling between original and working.

Pushed new branch T25810-FiberfoxOriginalGradients.

Fri, Jan 4, 9:26 PM · MITK
neher claimed T25810: [MITK Diffusion] Check gradient handling between original and working.
Fri, Jan 4, 9:14 PM · MITK
neher added a comment to T25810: [MITK Diffusion] Check gradient handling between original and working.

New simulations of all HCP data. Change reference image to HCP geometry.

Fri, Jan 4, 9:14 PM · MITK
neher created T25810: [MITK Diffusion] Check gradient handling between original and working.
Fri, Jan 4, 8:58 PM · MITK
neher closed T25809: [MITK Diffusion] Denoising and registration mess up gradients as Resolved.
Fri, Jan 4, 8:57 PM · MITK
neher committed rMITK35ec5d15747d: Merge branch 'T25809-GradientMessup' (authored by neher).
Merge branch 'T25809-GradientMessup'
Fri, Jan 4, 5:21 PM
neher committed rMITKde2766771607: Fixed gradient property handling in denoising and registration view (authored by neher).
Fixed gradient property handling in denoising and registration view
Fri, Jan 4, 5:16 PM
neher added a comment to T25809: [MITK Diffusion] Denoising and registration mess up gradients.

Pushed new branch T25809-GradientMessup.

Fri, Jan 4, 5:16 PM · MITK
neher triaged T25809: [MITK Diffusion] Denoising and registration mess up gradients as High priority.
Fri, Jan 4, 4:52 PM · MITK
neher closed T25806: [MITK Diffusion] Random fiber phantom cmdapp name as Resolved.
Fri, Jan 4, 11:49 AM · MITK
neher committed rMITKf9b1cc0d3451: Merge branch 'T25806-RandFName' (authored by neher).
Merge branch 'T25806-RandFName'
Fri, Jan 4, 11:49 AM
neher committed rMITK6fcf0485517f: Change name (authored by neher).
Change name
Fri, Jan 4, 11:48 AM
neher added a comment to T25806: [MITK Diffusion] Random fiber phantom cmdapp name.

Pushed new branch T25806-RandFName.

Fri, Jan 4, 11:48 AM · MITK
neher triaged T25806: [MITK Diffusion] Random fiber phantom cmdapp name as Normal priority.
Fri, Jan 4, 11:47 AM · MITK

Sat, Dec 29

neher closed T25803: CmdInterface duration in days if necessary as Resolved.
Sat, Dec 29, 12:06 PM

Thu, Dec 27

neher triaged T25803: CmdInterface duration in days if necessary as Normal priority.
Thu, Dec 27, 7:27 AM

Dec 20 2018

neher triaged T25796: CmdInterface in CmdInterface as Normal priority.
Dec 20 2018, 3:03 PM
neher triaged T25795: [MITK Diffusion] apply affine in trk format as Normal priority.
Dec 20 2018, 1:17 PM · MITK
neher triaged T25793: [MITK Diffusion] Check for zeros and nans in fiber fit as Normal priority.
Dec 20 2018, 1:05 PM · MITK

Dec 19 2018

neher closed T25578: [MITK Diffusion] The TBSS View user manual should not be top-level as Resolved.
Dec 19 2018, 2:01 PM · MITK
neher committed rMITKf1bc7e4da823: Merge branch 'T25578-DisableTbss' (authored by neher).
Merge branch 'T25578-DisableTbss'
Dec 19 2018, 2:01 PM
neher committed rMITKfb2614be0ede: Disable TBSS plugin. Not maintained and probably not used for ages. (authored by neher).
Disable TBSS plugin. Not maintained and probably not used for ages.
Dec 19 2018, 2:00 PM
neher added a comment to T25578: [MITK Diffusion] The TBSS View user manual should not be top-level.

Pushed new branch T25578-DisableTbss.

Dec 19 2018, 2:00 PM · MITK
neher closed T25266: [MITK Diffusion] Update user manual as Resolved.
Dec 19 2018, 1:52 PM · MITK
neher closed T20187: Diffusion: loading of fiber bundle files with .vtk ending does not work as Invalid.
Dec 19 2018, 1:44 PM · MITK
neher closed T25773: [MITK Diffusion] vtk memory leaks as Resolved.
Dec 19 2018, 1:43 PM · MITK
neher closed T25514: [MITK Diffusion] SH image output in dipy view as Resolved.
Dec 19 2018, 1:43 PM · MITK
neher committed rMITKee28ce26bd2d: Merge branch 'T25514-ShInDipyView' (authored by neher).
Merge branch 'T25514-ShInDipyView'
Dec 19 2018, 1:36 PM
neher committed rMITK6f1f222222f1: SH output (authored by neher).
SH output
Dec 19 2018, 1:35 PM
neher added a comment to T25514: [MITK Diffusion] SH image output in dipy view.

Pushed new branch T25514-ShInDipyView.

Dec 19 2018, 1:35 PM · MITK
neher closed T25579: [MITK Diffusion] Enable partial volume analysis view as Resolved.
Dec 19 2018, 7:50 AM · MITK
neher closed T25783: [MITK Diffusion] Extract similar tracts fails as Resolved.
Dec 19 2018, 7:50 AM · MITK

Dec 18 2018

neher committed rMITKbb54bdf91097: Merge branch 'T25783-TractSim' (authored by neher).
Merge branch 'T25783-TractSim'
Dec 18 2018, 9:17 PM
neher committed rMITK4813b4f46ecc: Checking masks (authored by neher).
Checking masks
Dec 18 2018, 4:10 PM
neher added a comment to T25783: [MITK Diffusion] Extract similar tracts fails.

Pushed new branch T25783-TractSim.

Dec 18 2018, 4:09 PM · MITK
neher triaged T25783: [MITK Diffusion] Extract similar tracts fails as Normal priority.
Dec 18 2018, 2:13 PM · MITK
neher closed T25386: [MITK Diffusion] Diffusion warnings as Resolved.
Dec 18 2018, 1:27 PM · MITK
neher committed rMITK58970bc60959: Merge branch 'T25778-LoadFibsHelper' (authored by neher).
Merge branch 'T25778-LoadFibsHelper'
Dec 18 2018, 1:21 PM
neher committed rMITKb03cd40c0b29: Sh in tracking gui (authored by neher).
Sh in tracking gui
Dec 18 2018, 1:21 PM
neher committed rMITK08e13f6abc61: Merge branch 'T25778-LoadFibsHelper' (authored by neher).
Merge branch 'T25778-LoadFibsHelper'
Dec 18 2018, 11:50 AM
neher committed rMITK137d5ff4e773: Check for real fib files first (authored by neher).
Check for real fib files first
Dec 18 2018, 11:49 AM
neher added a comment to T25778: [MITK Diffusion] Streamliche tracking more verbose on fail.

Pushed new branch T25778-LoadFibsHelper.

Dec 18 2018, 11:49 AM · MITK
neher closed T25778: [MITK Diffusion] Streamliche tracking more verbose on fail as Resolved.
Dec 18 2018, 11:22 AM · MITK
neher committed rMITK2859f65055f0: Merge branch 'T25778-NoSeeds' (authored by neher).
Merge branch 'T25778-NoSeeds'
Dec 18 2018, 11:19 AM
neher committed rMITK8b4223d26ebd: Output info that no valid seed points are found (authored by neher).
Output info that no valid seed points are found
Dec 18 2018, 11:18 AM
neher added a comment to T25778: [MITK Diffusion] Streamliche tracking more verbose on fail.

Pushed new branch T25778-NoSeeds.

Dec 18 2018, 11:18 AM · MITK
neher added a project to T25033: Python console colors do not work with dark theme: Restricted Project.
Dec 18 2018, 10:39 AM · Restricted Project, MITK
neher closed T25442: [MITK Diffusion] Add copy to and from python for diffusion-weighted images as Wontfix.
Dec 18 2018, 7:49 AM · MITK
neher closed T24705: [MITK Diffusion] MITK Diffusion crashes on close as Invalid.
Dec 18 2018, 7:49 AM · MITK (2018-04)
neher triaged T25779: [MITK Diffusion] Streamline tractography parameter files as Wishlist priority.
Dec 18 2018, 7:47 AM · MITK
neher triaged T25778: [MITK Diffusion] Streamliche tracking more verbose on fail as Wishlist priority.
Dec 18 2018, 7:47 AM · MITK

Dec 17 2018

neher committed rMDS3d5532664af7: deprecated get_affine (authored by neher).
deprecated get_affine
Dec 17 2018, 5:05 PM
neher committed rMITK1a85a3d68117: Merge branch 'T25773-VtkLeaks' (authored by neher).
Merge branch 'T25773-VtkLeaks'
Dec 17 2018, 11:15 AM
neher committed rMITK099b7de2de4b: Manually disable VTK leak check (authored by neher).
Manually disable VTK leak check
Dec 17 2018, 11:14 AM
neher closed T25736: [MITK Diffusion] make nr threads limit possible for cmdapps as Wontfix.
Dec 17 2018, 9:49 AM · MITK
neher committed rMITK9b3cb0f9a64b: Merge branch 'T25773-VtkLeaks' (authored by neher).
Merge branch 'T25773-VtkLeaks'
Dec 17 2018, 7:44 AM
neher committed rMITK8cd21e7f1efe: Smartpointer (authored by neher).
Smartpointer
Dec 17 2018, 7:43 AM
neher added a comment to T25773: [MITK Diffusion] vtk memory leaks.

Pushed new branch T25773-VtkLeaks.

Dec 17 2018, 7:43 AM · MITK
neher closed T25771: [MITK Diffusion] Add cmdapp for random phantom as Resolved.
Dec 17 2018, 7:13 AM · MITK

Dec 16 2018

neher committed rMDSe293101f0aab: File ending fix (authored by neher).
File ending fix
Dec 16 2018, 9:30 PM

Dec 15 2018

neher triaged T25773: [MITK Diffusion] vtk memory leaks as Normal priority.
Dec 15 2018, 10:29 AM · MITK

Dec 14 2018

neher committed rMITK71e7adc1d9bf: Merge branch 'T25771-RandomPhantomCmdapp' (authored by neher).
Merge branch 'T25771-RandomPhantomCmdapp'
Dec 14 2018, 5:00 PM
neher committed rMITK06e4e3924d01: Merge branch 'T25771-RandomPhantomCmdapp' (authored by neher).
Merge branch 'T25771-RandomPhantomCmdapp'
Dec 14 2018, 4:59 PM
neher committed rMITK95b3340ab330: Add compression (authored by neher).
Add compression
Dec 14 2018, 4:55 PM
neher committed rMITK82bb3a03b8e6: Add fib ending (authored by neher).
Add fib ending
Dec 14 2018, 4:48 PM
neher committed rMITK3fb825126056: Merge branch 'T25771-RandomPhantomCmdapp' (authored by neher).
Merge branch 'T25771-RandomPhantomCmdapp'
Dec 14 2018, 4:46 PM
neher committed rMITKd0b55e93cb93: Fix pi (authored by neher).
Fix pi
Dec 14 2018, 4:43 PM
neher committed rMITK17ef2bb5661a: Merge branch 'T25771-RandomPhantomCmdapp' (authored by neher).
Merge branch 'T25771-RandomPhantomCmdapp'
Dec 14 2018, 4:41 PM
neher committed rMITK99eb2086f809: Add cmdapp (authored by neher).
Add cmdapp
Dec 14 2018, 4:40 PM
MITK · DKFZ