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neher (Peter Neher)
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Projects (9)

User Details

User Since
Aug 1 2016, 12:10 PM (205 w, 10 h)

Recent Activity

Tue, Jun 30

neher closed T27512: Fix registration file renaming as Resolved.
Tue, Jun 30, 11:49 AM · MITK Diffusion
neher committed rMITKDIFF108f4325ec45: Merge branch 'T27512-FixRenamingIssue' (authored by neher).
Merge branch 'T27512-FixRenamingIssue'
Tue, Jun 30, 11:44 AM
neher committed rMITKDIFF402417bfc4da: Fix naming issue in cmdapp (authored by neher).
Fix naming issue in cmdapp
Tue, Jun 30, 11:43 AM
neher committed rMITKDIFF5b3c0b588122: Merge branch 'T27512-FixRenamingIssue' (authored by neher).
Merge branch 'T27512-FixRenamingIssue'
Tue, Jun 30, 11:38 AM
neher committed rMITKDIFFfdab76cac1da: Fix naming issue in cmdapp (authored by neher).
Fix naming issue in cmdapp
Tue, Jun 30, 11:38 AM
neher committed rMITKDIFF1625582d6eab: Merge branch 'T27512-FixRenamingIssue' (authored by neher).
Merge branch 'T27512-FixRenamingIssue'
Tue, Jun 30, 10:58 AM
neher committed rMITKDIFFebc7079eaa01: Renamed include (authored by neher).
Renamed include
Tue, Jun 30, 10:57 AM
neher added a comment to T27512: Fix registration file renaming.

Pushed new branch T27512-FixRenamingIssue.

Tue, Jun 30, 10:57 AM · MITK Diffusion
neher triaged T27512: Fix registration file renaming as Normal priority.
Tue, Jun 30, 10:56 AM · MITK Diffusion

Mon, Jun 22

neher committed rMITK119dbc557eb9: Unsupported/untested qt version is now a warning, not a cmake error (authored by neher).
Unsupported/untested qt version is now a warning, not a cmake error
Mon, Jun 22, 9:18 AM

Fri, Jun 19

neher triaged T27487: Multi-slice screenshots as Wishlist priority.
Fri, Jun 19, 8:46 AM · MITK

Thu, Jun 18

neher added a revision to T26721: Prepare Qt 5.13 compatibility: Unknown Object (Differential Revision).
Thu, Jun 18, 9:38 AM · MITK
neher added a comment to T26721: Prepare Qt 5.13 compatibility.

Pushed new branch T26721-UpgradeQtVersion.

Thu, Jun 18, 9:35 AM · MITK

Tue, Jun 9

neher committed rMITKDIFF7e4105a7626b: Merge branch 'T27472-FiberStatistics' (authored by neher).
Merge branch 'T27472-FiberStatistics'
Tue, Jun 9, 2:01 PM
neher committed rMITKDIFFa304c33c6e87: Updated cmdapp description (authored by neher).
Updated cmdapp description
Tue, Jun 9, 2:00 PM
neher closed T27472: Implement print fiber statistics cmdapp as Resolved.
Tue, Jun 9, 11:30 AM · MITK Diffusion
neher committed rMITKDIFF8d2461f66b98: Merge branch 'T27472-FiberStatistics' (authored by neher).
Merge branch 'T27472-FiberStatistics'
Tue, Jun 9, 10:59 AM
neher committed rMITKDIFF271ea12347d0: Add fiber statistics cmdapp (authored by neher).
Add fiber statistics cmdapp
Tue, Jun 9, 10:58 AM
neher added a comment to T27472: Implement print fiber statistics cmdapp.

Pushed new branch T27472-FiberStatistics.

Tue, Jun 9, 10:58 AM · MITK Diffusion
neher triaged T27472: Implement print fiber statistics cmdapp as Wishlist priority.
Tue, Jun 9, 10:57 AM · MITK Diffusion

May 28 2020

neher added a comment to T26721: Prepare Qt 5.13 compatibility.

When using Qt 5.13 on Ubuntu 20.04 I had no issues with our third party libraries, only a lot of deprecated warnings as errors in MITK and other minor issues.

May 28 2020, 7:32 AM · MITK

May 26 2020

neher reopened T22976: Add gifti/cifti file support as "Open".
May 26 2020, 2:02 PM · Auto-closed, MITK
neher claimed T22976: Add gifti/cifti file support.
May 26 2020, 2:02 PM · Auto-closed, MITK

May 15 2020

neher closed T27426: IVIM cmdapp should provide all fits as Resolved.
May 15 2020, 2:17 PM · MITK Diffusion
neher committed rMITKDIFF14fb9c209ad8: Merge branch 'T27426-IvimFits' (authored by neher).
Merge branch 'T27426-IvimFits'
May 15 2020, 2:16 PM
neher committed rMITKDIFF29b43221d388: All fits available (authored by neher).
All fits available
May 15 2020, 2:16 PM
neher added a comment to T27426: IVIM cmdapp should provide all fits.

Pushed new branch T27426-IvimFits.

May 15 2020, 2:16 PM · MITK Diffusion
neher triaged T27426: IVIM cmdapp should provide all fits as Normal priority.
May 15 2020, 2:15 PM · MITK Diffusion

May 14 2020

neher closed T27417: Fix readers as Resolved.
May 14 2020, 9:40 AM · MITK Diffusion
neher lowered the priority of T26056: [MITK Diffusion] Integrated MIC Bet update in MITK Diffusion from High to Normal.
May 14 2020, 9:24 AM · MITK Diffusion
neher lowered the priority of T26879: Account for voxel size in TRK header matrix from Normal to Low.
May 14 2020, 9:24 AM · MITK Diffusion
neher raised the priority of T26879: Account for voxel size in TRK header matrix from Low to Normal.
May 14 2020, 9:24 AM · MITK Diffusion
neher lowered the priority of T26879: Account for voxel size in TRK header matrix from Normal to Low.
May 14 2020, 9:24 AM · MITK Diffusion
neher lowered the priority of T27070: Planar figure to image fails from High to Normal.
May 14 2020, 9:24 AM · MITK Diffusion
neher triaged T27419: Fix dartclient documentation build as High priority.
May 14 2020, 9:24 AM · MITK Diffusion
neher raised the priority of T27417: Fix readers from High to Unbreak Now!.
May 14 2020, 9:23 AM · MITK Diffusion
neher committed rMITKDIFF0653d492a577: Merge branch 'T27417-FixReaders' (authored by neher).
Merge branch 'T27417-FixReaders'
May 14 2020, 8:25 AM
neher committed rMITKDIFFe11dd618dc39: Read --> DoRead (authored by neher).
Read --> DoRead
May 14 2020, 8:24 AM
neher added a comment to T27417: Fix readers.

Pushed new branch T27417-FixReaders.

May 14 2020, 8:24 AM · MITK Diffusion
neher triaged T27417: Fix readers as High priority.
May 14 2020, 8:23 AM · MITK Diffusion

May 13 2020

neher added a comment to T26415: Python plugin fails to run on Windows.

The python plugin seems to work fine on windows 10

May 13 2020, 10:46 AM · MITK
neher lowered the priority of T26960: Fiber mapper test fails from Unbreak Now! to High.
May 13 2020, 10:27 AM · MITK Diffusion
neher raised the priority of T26960: Fiber mapper test fails from Normal to Unbreak Now!.
May 13 2020, 10:27 AM · MITK Diffusion
neher raised the priority of T27070: Planar figure to image fails from Normal to High.
May 13 2020, 10:27 AM · MITK Diffusion
neher moved T24297: Refactor mitkRawShModel from Backlog to Fiberfox on the MITK Diffusion board.
May 13 2020, 10:26 AM · MITK Diffusion
neher moved T24973: Add bias fields from Backlog to Fiberfox on the MITK Diffusion board.
May 13 2020, 10:26 AM · MITK Diffusion
neher moved T25001: Add proton density maps from Backlog to Fiberfox on the MITK Diffusion board.
May 13 2020, 10:26 AM · MITK Diffusion
neher moved T26062: Implement parallel imaging from Backlog to Fiberfox on the MITK Diffusion board.
May 13 2020, 10:26 AM · MITK Diffusion
neher renamed T26061: Implement 3D sequences from Fiberfox 3D sequences to Implement 3D sequences.
May 13 2020, 10:26 AM · MITK Diffusion
neher moved T26061: Implement 3D sequences from Backlog to Fiberfox on the MITK Diffusion board.
May 13 2020, 10:26 AM · MITK Diffusion
neher moved T26180: Implement readout gradient dephasing from Backlog to Fiberfox on the MITK Diffusion board.
May 13 2020, 10:26 AM · MITK Diffusion
neher renamed T26180: Implement readout gradient dephasing from Fiberfox: implement readout gradient dephasing to Implement readout gradient dephasing.
May 13 2020, 10:26 AM · MITK Diffusion
neher moved T26124: Add new systematic fiberfox tests from Backlog to Fiberfox on the MITK Diffusion board.
May 13 2020, 10:26 AM · MITK Diffusion
neher moved T26281: Simulation without fibers, only VFMs from Backlog to Fiberfox on the MITK Diffusion board.
May 13 2020, 10:26 AM · MITK Diffusion
neher renamed T26281: Simulation without fibers, only VFMs from Fiberfox: simulation without fibers, only VFMs to Simulation without fibers, only VFMs.
May 13 2020, 10:26 AM · MITK Diffusion
neher renamed T26879: Account for voxel size in TRK header matrix from Accoutn for voxel size in TRK header matrix to Account for voxel size in TRK header matrix.
May 13 2020, 10:25 AM · MITK Diffusion
neher moved T27342: Implement gyral-shape fiber ending in fiberfox from Backlog to Fiberfox on the MITK Diffusion board.
May 13 2020, 10:25 AM · MITK Diffusion
neher closed T27381: Add fiber weighting to coloring in processing view as Resolved.
May 13 2020, 10:25 AM · MITK Diffusion
neher renamed T23701: Refactor OdfVtkMapper2D from [MITK Diffusion] Refactor OdfVtkMapper2D to Refactor OdfVtkMapper2D.
May 13 2020, 10:24 AM · MITK Diffusion
neher renamed T24297: Refactor mitkRawShModel from [MITK Diffusion] Refactor mitkRawShModel to Refactor mitkRawShModel.
May 13 2020, 10:24 AM · MITK Diffusion
neher renamed T24973: Add bias fields from [MITK Diffusion] Add bias field to fiberfox to Add bias fields.
May 13 2020, 10:24 AM · MITK Diffusion
neher renamed T25001: Add proton density maps from [Fiberfox] Add proton density maps to Add proton density maps.
May 13 2020, 10:24 AM · MITK Diffusion
neher renamed T25501: Implement 3D visualization of parcellation images from [MITK Diffusion] Implement 3D visualization of parcellation images to Implement 3D visualization of parcellation images.
May 13 2020, 10:24 AM · MITK Diffusion
neher renamed T25567: Data quality analysis from [MITK Diffusion] Data quality analysis to Data quality analysis .
May 13 2020, 10:23 AM · MITK Diffusion
neher renamed T26061: Implement 3D sequences from [MITK Diffusion] Fiberfox 3D sequences to Fiberfox 3D sequences.
May 13 2020, 10:23 AM · MITK Diffusion
neher renamed T26062: Implement parallel imaging from [MITK Diffusion] Implement parallel imaging to Implement parallel imaging.
May 13 2020, 10:23 AM · MITK Diffusion
neher renamed T26124: Add new systematic fiberfox tests from [MITK Diffusion] Add new systematic fiberfox tests to Add new systematic fiberfox tests.
May 13 2020, 10:23 AM · MITK Diffusion
neher renamed T26180: Implement readout gradient dephasing from [MITK Diffusion] Fiberfox: implement readout gradient dephasing to Fiberfox: implement readout gradient dephasing.
May 13 2020, 10:23 AM · MITK Diffusion
neher renamed T26281: Simulation without fibers, only VFMs from [MITK Diffusion] Fiberfox: simulation without fibers, only VFMs to Fiberfox: simulation without fibers, only VFMs.
May 13 2020, 10:22 AM · MITK Diffusion
neher edited projects for T23701: Refactor OdfVtkMapper2D, added: MITK Diffusion; removed MITK.
May 13 2020, 10:21 AM · MITK Diffusion
neher edited projects for T24297: Refactor mitkRawShModel, added: MITK Diffusion; removed MITK.
May 13 2020, 10:21 AM · MITK Diffusion
neher edited projects for T24973: Add bias fields, added: MITK Diffusion; removed MITK.
May 13 2020, 10:21 AM · MITK Diffusion
neher renamed T25001: Add proton density maps from [MITK Diffusion] Add proton density maps to [Fiberfox] Add proton density maps.
May 13 2020, 10:21 AM · MITK Diffusion
neher edited projects for T25001: Add proton density maps, added: MITK Diffusion; removed MITK.
May 13 2020, 10:20 AM · MITK Diffusion
neher edited projects for T25501: Implement 3D visualization of parcellation images, added: MITK Diffusion; removed MITK.
May 13 2020, 10:20 AM · MITK Diffusion
neher edited projects for T25567: Data quality analysis , added: MITK Diffusion; removed MITK.
May 13 2020, 10:20 AM · MITK Diffusion
neher raised the priority of T26056: [MITK Diffusion] Integrated MIC Bet update in MITK Diffusion from Wishlist to High.

Maybe wait for Kim's python project

May 13 2020, 10:19 AM · MITK Diffusion
neher edited projects for T26056: [MITK Diffusion] Integrated MIC Bet update in MITK Diffusion, added: MITK Diffusion; removed MITK.
May 13 2020, 10:19 AM · MITK Diffusion
neher edited projects for T26061: Implement 3D sequences, added: MITK Diffusion; removed MITK.
May 13 2020, 10:18 AM · MITK Diffusion
neher edited projects for T26062: Implement parallel imaging, added: MITK Diffusion; removed MITK.
May 13 2020, 10:18 AM · MITK Diffusion
neher edited projects for T26124: Add new systematic fiberfox tests, added: MITK Diffusion; removed MITK.
May 13 2020, 10:18 AM · MITK Diffusion
neher edited projects for T26180: Implement readout gradient dephasing, added: MITK Diffusion; removed MITK.
May 13 2020, 10:17 AM · MITK Diffusion
neher edited projects for T26281: Simulation without fibers, only VFMs, added: MITK Diffusion; removed MITK.
May 13 2020, 10:17 AM · MITK Diffusion
neher closed T26153: [MITK Diffusion] Fiberfox simulate frequency and phase encoding gradients as Invalid.
May 13 2020, 10:17 AM · MITK

May 8 2020

neher committed rMITKDIFF3f114661db68: Merge branch 'T27318-IvimFit' (authored by neher).
Merge branch 'T27318-IvimFit'
May 8 2020, 5:22 PM
neher committed rMITKDIFF00761448d368: Fixed nanas (authored by neher).
Fixed nanas
May 8 2020, 5:22 PM

May 7 2020

neher closed T27318: Make IVIM first D&f and then D* fit default as Resolved.
May 7 2020, 1:14 PM · MITK Diffusion
neher committed rMITKDIFF32e83db18f77: Merge branch 'T27318-IvimFit' (authored by neher).
Merge branch 'T27318-IvimFit'
May 7 2020, 12:20 PM
neher committed rMITKDIFFdb7fceebbfb0: Fix IVIM b-zero threshold crash (authored by neher).
Fix IVIM b-zero threshold crash
May 7 2020, 12:20 PM
neher added a comment to T27318: Make IVIM first D&f and then D* fit default.

Pushed new branch T27318-IvimFit.

May 7 2020, 12:20 PM · MITK Diffusion

May 6 2020

neher triaged T27381: Add fiber weighting to coloring in processing view as Wishlist priority.
May 6 2020, 8:55 PM · MITK Diffusion

Apr 20 2020

neher triaged T27342: Implement gyral-shape fiber ending in fiberfox as Wishlist priority.
Apr 20 2020, 9:01 AM · MITK Diffusion

Apr 18 2020

neher added a comment to T27330: Otsu Segmentation using Diffusion Weighted data.

Yes, it is. Mac is still work in progress. As an alternative I recommend teem-unu for nrrd image operations. Not sure about Mac there too though.

Apr 18 2020, 11:01 AM · MITK
neher added a comment to T27330: Otsu Segmentation using Diffusion Weighted data.

Sure. B0 extraction is available in the diffusion preprocessing view.

Apr 18 2020, 9:34 AM · MITK

Apr 17 2020

neher triaged T27324: Investigate MITK <--> python image transfer as Normal priority.
Apr 17 2020, 11:43 AM · MITK

Apr 16 2020

neher triaged T27318: Make IVIM first D&f and then D* fit default as Normal priority.
Apr 16 2020, 10:50 AM · MITK Diffusion
neher created T27318: Make IVIM first D&f and then D* fit default.
Apr 16 2020, 8:15 AM · MITK Diffusion

Mar 23 2020

neher triaged T27250: Color scale overlay does not work as Normal priority.
Mar 23 2020, 11:13 AM · MITK

Mar 13 2020

neher committed rMITKDIFF9f1ab836bd92: Merge branch 'T27167-IvimChart' (authored by neher).
Merge branch 'T27167-IvimChart'
Mar 13 2020, 1:33 PM
neher committed rMITKDIFFaa608df144c4: Update readme (authored by neher).
Update readme
Mar 13 2020, 1:33 PM