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Package version mismatch during upgrade
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A user (R 3.6, Linux) reported an error that occurred during the upgrading process from challengeR 0.3.3 to 1.0.1:

namespace ‘graph’ 1.62.0 is being loaded, but >= 1.64.0 is required

Event Timeline

eisenman triaged this task as High priority.Mar 3 2021, 2:06 PM
eisenman created this task.

The package "graph" was moved from CRAN to Bioconductor:

This might be the reason why a later version could not be found.

graph had only been used for networks, I guess version 1.62 is sufficient

In this case we solved it by upgrading BiocManager. Probably the previous version did not know about the later version of "graph".