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eisenman (Matthias Eisenmann)
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Projects (9)

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User Since
Aug 1 2016, 12:10 PM (225 w, 5 d)

Recent Activity

Thu, Nov 26

eisenman moved T27420: report text from In Progress to Done on the challengeR (v1.0) board.

Compensated for 2. Text was revised in T27677.

Thu, Nov 26, 10:35 PM · challengeR (v1.0)
eisenman committed rCHALLENGEReffec2e25455: Merge branch 'feature/T27770-ImproveReportFormat' into develop (authored by eisenman).
Merge branch 'feature/T27770-ImproveReportFormat' into develop
Thu, Nov 26, 10:33 PM
eisenman committed rCHALLENGER0f1d4a7a652a: Add page breaks such that descriptions appear along with the plot (authored by eisenman).
Add page breaks such that descriptions appear along with the plot
Thu, Nov 26, 10:32 PM
eisenman moved T27420: report text from Backlog to In Progress on the challengeR (v1.0) board.
Thu, Nov 26, 3:38 PM · challengeR (v1.0)
eisenman added a comment to T28016: embed web app in package.

It sounds nice, but I also think that we can run into cumbersome situations w.r.t. package management and version control with this approach: If the web app is located within the package, for each change to the package itself, it has to be investigated how the change affects the web app. The developer also has to adapt and test the web app then. This also means that for each package release, a corresponding web app has to be provided. In my opinion it makes more sense to focus either on the package or the web app during the development. Probably, we want to improve the web app that is based on a fixed package version x most frequently. This use case is then hampered by this approach as the package itself also evolves.

Thu, Nov 26, 12:07 PM · challengeR (v1.0)

Mon, Nov 23

eisenman created T27998: Interpretation of consensus ranking values needs further explanation.
Mon, Nov 23, 3:19 PM · challengeR (v1.0)
eisenman moved T27996: Restructure troubleshooting section from In Progress to Done on the challengeR (v1.0) board.
Mon, Nov 23, 3:00 PM · challengeR (v1.0)
eisenman committed rCHALLENGER0b2f008acf09: Merge branch 'feature/T27996-RestructureTroubleshootingSection' into develop (authored by eisenman).
Merge branch 'feature/T27996-RestructureTroubleshootingSection' into develop
Mon, Nov 23, 2:56 PM
eisenman committed rCHALLENGERa4fe647120df: Restructure troubleshooting section (authored by eisenman).
Restructure troubleshooting section
Mon, Nov 23, 2:55 PM
eisenman moved T27996: Restructure troubleshooting section from Backlog to In Progress on the challengeR (v1.0) board.
Mon, Nov 23, 2:53 PM · challengeR (v1.0)
eisenman created T27996: Restructure troubleshooting section.
Mon, Nov 23, 2:53 PM · challengeR (v1.0)
eisenman moved T27930: Revise examples given in the vignettes from In Progress to Done on the challengeR (v1.0) board.
Mon, Nov 23, 10:53 AM · challengeR (v1.0)
eisenman committed rCHALLENGERc8c08e6545b8: Merge branch 'feature/T27930-ReviseDocumentation' into develop (authored by eisenman).
Merge branch 'feature/T27930-ReviseDocumentation' into develop
Mon, Nov 23, 10:53 AM
eisenman committed rCHALLENGER89654d3c7eb6: Revise quickstart guide (authored by eisenman).
Revise quickstart guide
Mon, Nov 23, 10:51 AM
eisenman committed rCHALLENGERb7f777620193: Remove overview as it is redundant to the README and the Roxygen documentation… (authored by eisenman).
Remove overview as it is redundant to the README and the Roxygen documentation…
Mon, Nov 23, 10:51 AM

Fri, Nov 20

eisenman committed rCHALLENGER43ddfa6a6549: Rename tutorial.Rmd to quickstart.Rmd (authored by eisenman).
Rename tutorial.Rmd to quickstart.Rmd
Fri, Nov 20, 8:54 AM

Thu, Nov 19

eisenman committed rCHALLENGERa1388721b6f7: Fix typo (authored by eisenman).
Fix typo
Thu, Nov 19, 10:09 PM

Wed, Nov 18

eisenman created T27971: Provide code for podium plot in vignette "Visualizations".
Wed, Nov 18, 12:36 PM · challengeR (v1.0)

Tue, Nov 17

eisenman committed rCHALLENGER76a9c34c5ff3: Revise readme file (authored by eisenman).
Revise readme file
Tue, Nov 17, 11:19 AM
eisenman committed rCHALLENGER79a2a6d3e71f: Use DKFZ logo with higher resolution (authored by eisenman).
Use DKFZ logo with higher resolution
Tue, Nov 17, 11:19 AM

Mon, Nov 16

eisenman moved T27930: Revise examples given in the vignettes from Backlog to In Progress on the challengeR (v1.0) board.
Mon, Nov 16, 6:30 PM · challengeR (v1.0)
eisenman moved T27929: Provide documentation for plot functions from In Progress to Done on the challengeR (v1.0) board.

The plot functions that are used in the report have Roxygen documentation now. There's also a vignette called "Visualizations" that shows and explains the plots along with the corresponding plot function.

Mon, Nov 16, 5:52 PM · challengeR (v1.0)
eisenman committed rCHALLENGER248ff75fd785: Merge branch 'feature/T27929-ProvideVisualizationOverview' into develop (authored by eisenman).
Merge branch 'feature/T27929-ProvideVisualizationOverview' into develop
Mon, Nov 16, 5:49 PM
eisenman committed rCHALLENGER5ee4b2aa921e: Add man pages (authored by eisenman).
Add man pages
Mon, Nov 16, 5:40 PM
eisenman committed rCHALLENGER99ffad44f9e7: Clean up (authored by eisenman).
Clean up
Mon, Nov 16, 5:32 PM
eisenman committed rCHALLENGER5ff8bf846b1d: Cite paper (authored by eisenman).
Cite paper
Mon, Nov 16, 5:32 PM
eisenman committed rCHALLENGER31a95a501028: Add documentation for cluster dendrogram (authored by eisenman).
Add documentation for cluster dendrogram
Mon, Nov 16, 5:32 PM
eisenman committed rCHALLENGER2c54ff2dfae3: Reference file after rename (authored by eisenman).
Reference file after rename
Mon, Nov 16, 5:21 PM
eisenman committed rCHALLENGER701786916e7e: Rename reportMultiple.Rmd to report.Rmd (authored by eisenman).
Rename reportMultiple.Rmd to report.Rmd
Mon, Nov 16, 5:21 PM
eisenman committed rCHALLENGER85d6351208ab: Add documentation for significance map (authored by eisenman).
Add documentation for significance map
Mon, Nov 16, 4:56 PM
eisenman committed rCHALLENGER1e7fcd95307f: Rename wrapper.R to rankingMethods.R (authored by eisenman).
Rename wrapper.R to rankingMethods.R
Mon, Nov 16, 4:43 PM
eisenman committed rCHALLENGERddcfcd69bf81: Add documentation for consensus (authored by eisenman).
Add documentation for consensus
Mon, Nov 16, 4:41 PM
eisenman committed rCHALLENGER9a3447d1eeb0: Rename significancePlot.R to significanceMap.R (authored by eisenman).
Rename significancePlot.R to significanceMap.R
Mon, Nov 16, 4:28 PM
eisenman committed rCHALLENGER1b3e79568328: Add documentation for violin plot (authored by eisenman).
Add documentation for violin plot
Mon, Nov 16, 2:27 PM
eisenman committed rCHALLENGER1bbb649283e5: Add documentation for stability plot functions (authored by eisenman).
Add documentation for stability plot functions
Mon, Nov 16, 2:19 PM
eisenman committed rCHALLENGER082a9fd7ed02: Test that stabilityByAlgorithm returns the correct number of plots (authored by eisenman).
Test that stabilityByAlgorithm returns the correct number of plots
Mon, Nov 16, 2:19 PM
eisenman committed rCHALLENGER1b86559604af: Test that blob plot for visualizing ranking stability across tasks returns one… (authored by eisenman).
Test that blob plot for visualizing ranking stability across tasks returns one…
Mon, Nov 16, 2:19 PM
eisenman created T27963: Task names printed as R output in Sec. 3.1 of multi-task report.
Mon, Nov 16, 10:52 AM · challengeR (v1.0)

Fri, Nov 13

eisenman committed rCHALLENGER4bdc828b3078: Add documentation for methods plot (authored by eisenman).
Add documentation for methods plot
Fri, Nov 13, 6:08 PM
eisenman committed rCHALLENGERc7be8a865046: Rename visualization.R to stability.R (authored by eisenman).
Rename visualization.R to stability.R
Fri, Nov 13, 5:58 PM
eisenman committed rCHALLENGERa769bf8260b3: Add documentation for ranking heatmap (authored by eisenman).
Add documentation for ranking heatmap
Fri, Nov 13, 4:58 PM
eisenman committed rCHALLENGER90f393abb2a8: Add documentation for podium plot (authored by eisenman).
Add documentation for podium plot
Fri, Nov 13, 2:38 PM
eisenman committed rCHALLENGER6883574b5f91: Add documentation for boxplot (authored by eisenman).
Add documentation for boxplot
Fri, Nov 13, 12:44 PM
eisenman committed rCHALLENGER1657d032791d: Fix links to other packages (authored by eisenman).
Fix links to other packages
Fri, Nov 13, 12:24 PM
eisenman committed rCHALLENGER59b715df4091: Remove duplicate code (authored by eisenman).
Remove duplicate code
Fri, Nov 13, 12:24 PM

Thu, Nov 12

eisenman committed rCHALLENGERfb73906f4c6b: Add characterization of tasks section (authored by eisenman).
Add characterization of tasks section
Thu, Nov 12, 4:27 PM
eisenman committed rCHALLENGER73290e3fd09f: Specify ordering argument (authored by eisenman).
Specify ordering argument
Thu, Nov 12, 2:11 PM
eisenman added a comment to T27943: Plot function stability() raises error when used with default values.

Thank you for clarification!

Thu, Nov 12, 2:09 PM · challengeR (v1.0)
eisenman committed rCHALLENGER3a4167dbd3c2: Add characterization of algorithms section (authored by eisenman).
Add characterization of algorithms section
Thu, Nov 12, 12:06 PM

Tue, Nov 10

eisenman committed rCHALLENGER7795fcb0ee1a: Remove duplicate blank (authored by eisenman).
Remove duplicate blank
Tue, Nov 10, 7:02 PM
eisenman committed rCHALLENGER236239b4eb2c: Add vignette for providing an overview of visualizations and corresponding plot… (authored by eisenman).
Add vignette for providing an overview of visualizations and corresponding plot…
Tue, Nov 10, 7:02 PM
eisenman committed rCHALLENGERc329792a32de: Move example data to extdata directory (authored by eisenman).
Move example data to extdata directory
Tue, Nov 10, 7:02 PM
eisenman moved T27929: Provide documentation for plot functions from Backlog to In Progress on the challengeR (v1.0) board.
Tue, Nov 10, 6:54 PM · challengeR (v1.0)
eisenman updated the task description for T27943: Plot function stability() raises error when used with default values.
Tue, Nov 10, 6:24 PM · challengeR (v1.0)
eisenman triaged T27943: Plot function stability() raises error when used with default values as High priority.
Tue, Nov 10, 6:24 PM · challengeR (v1.0)
eisenman triaged T27942: Handle path separator characters in report name as High priority.
Tue, Nov 10, 1:23 PM · webChallengeR

Fri, Nov 6

eisenman triaged T27933: Bootstrapping is performed even if it was disabled as High priority.
Fri, Nov 6, 4:25 PM · webChallengeR
eisenman triaged T27932: Metric value column cannot be selected as High priority.
Fri, Nov 6, 2:34 PM · webChallengeR

Wed, Nov 4

eisenman added a comment to T27775: only export functions to be used by user.

I started with the roxygen documentation and found that the NAMESPACE file can be generated automatically by using the "export" tag.

Wed, Nov 4, 7:39 PM · challengeR (v1.0)
eisenman added a comment to T27360: compatibility with R4.0.0.

I did not try it yet. Did you? Currently, I don't want to take the risk of breaking my running development environment.

Wed, Nov 4, 7:28 PM · challengeR (v1.0)
eisenman added a comment to T27915: Podium plot shrinks for long algorithm names.

The legend could be moved to the bottom.

Wed, Nov 4, 7:25 PM · challengeR (v1.0)
eisenman created T27930: Revise examples given in the vignettes.
Wed, Nov 4, 7:24 PM · challengeR (v1.0)
eisenman moved T27278: Writing documentation for main functions from In Progress to Done on the challengeR (v1.0) board.
Wed, Nov 4, 7:22 PM · challengeR (v1.0)
eisenman triaged T27929: Provide documentation for plot functions as High priority.
Wed, Nov 4, 7:20 PM · challengeR (v1.0)
eisenman committed rCHALLENGERbbcc0348d83b: Merge branch 'feature/T27278-DocumentFunctions' into develop (authored by eisenman).
Merge branch 'feature/T27278-DocumentFunctions' into develop
Wed, Nov 4, 7:15 PM
eisenman renamed T27278: Writing documentation for main functions from Writing documentation to Writing documentation for main functions.
Wed, Nov 4, 7:14 PM · challengeR (v1.0)
eisenman committed rCHALLENGER52b31f098653: Add documentation for report (authored by eisenman).
Add documentation for report
Wed, Nov 4, 7:12 PM
eisenman committed rCHALLENGER9b02e856c35b: Fix typos (authored by eisenman).
Fix typos
Wed, Nov 4, 7:12 PM
eisenman committed rCHALLENGER4a91adbe9226: Make clean option explicit (authored by eisenman).
Make clean option explicit
Wed, Nov 4, 6:14 PM
eisenman committed rCHALLENGER7c5d8c07f7a0: Add documentation for report (authored by eisenman).
Add documentation for report
Wed, Nov 4, 6:14 PM
eisenman committed rCHALLENGER1ddd62735f35: Reuse implementation of report.bootstrap.list (authored by eisenman).
Reuse implementation of report.bootstrap.list
Wed, Nov 4, 4:51 PM
eisenman created T27928: Allow for CSV export of data frames at different stages.
Wed, Nov 4, 3:10 PM · challengeR
eisenman added a member for challengeR: menjivar.
Wed, Nov 4, 2:57 PM
eisenman committed rCHALLENGER946a00bd071c: Add documentation for bootstrap (authored by eisenman).
Add documentation for bootstrap
Wed, Nov 4, 12:03 PM
eisenman committed rCHALLENGERa5ad8dbb1350: Add documentation for rankThenAggregate (authored by eisenman).
Add documentation for rankThenAggregate
Wed, Nov 4, 10:18 AM
eisenman committed rCHALLENGER981458acd016: Add documentation for testThenRank (authored by eisenman).
Add documentation for testThenRank
Wed, Nov 4, 10:18 AM
eisenman committed rCHALLENGER2f1d658d0e47: Add documentation for aggregateThenRank (authored by eisenman).
Add documentation for aggregateThenRank
Wed, Nov 4, 10:18 AM

Tue, Nov 3

eisenman created T27925: Use cases of annotator option.
Tue, Nov 3, 4:33 PM · challengeR (v1.0)
eisenman committed rCHALLENGER9dd12526dfd5: Make case not optional (authored by eisenman).
Make case not optional
Tue, Nov 3, 3:42 PM
eisenman committed rCHALLENGER83a9bff486e1: Add documentation for as.challenge (authored by eisenman).
Add documentation for as.challenge
Tue, Nov 3, 3:42 PM

Mon, Nov 2

eisenman moved T27922: Remove network plot from report overview from In Progress to Done on the challengeR (v1.0) board.
Mon, Nov 2, 4:52 PM · challengeR (v1.0)
eisenman committed rCHALLENGER192c5dedf226: Merge branch 'feature/T27922-RemoveNetworkPlotFromOverview' into develop (authored by eisenman).
Merge branch 'feature/T27922-RemoveNetworkPlotFromOverview' into develop
Mon, Nov 2, 4:51 PM
eisenman committed rCHALLENGER3f51b34336f0: Remove network plot from overview (authored by eisenman).
Remove network plot from overview
Mon, Nov 2, 4:49 PM
eisenman moved T27922: Remove network plot from report overview from Backlog to In Progress on the challengeR (v1.0) board.
Mon, Nov 2, 4:47 PM · challengeR (v1.0)
eisenman created T27922: Remove network plot from report overview.
Mon, Nov 2, 4:46 PM · challengeR (v1.0)

Oct 23 2020

eisenman updated the task description for T27905: Investigate download failure.
Oct 23 2020, 11:00 AM · webChallengeR
eisenman triaged T27905: Investigate download failure as High priority.
Oct 23 2020, 10:56 AM · webChallengeR

Oct 12 2020

eisenman added a comment to T27708: ggplot2 dendrogram .

What is the issue with the current implementation?

Oct 12 2020, 1:28 PM · challengeR
eisenman moved T27278: Writing documentation for main functions from Backlog to In Progress on the challengeR (v1.0) board.
Oct 12 2020, 9:47 AM · challengeR (v1.0)

Oct 9 2020

eisenman triaged T27842: Error while generating single-task report as High priority.
Oct 9 2020, 3:18 PM · webChallengeR
eisenman triaged T27839: Second report cannot be downloaded as High priority.
Oct 9 2020, 11:08 AM · webChallengeR
eisenman triaged T27838: Add configuration option to indicate order of metric values as High priority.
Oct 9 2020, 11:03 AM · webChallengeR
eisenman triaged T27835: Change order of ranking configuration as Low priority.
Oct 9 2020, 9:59 AM · webChallengeR
eisenman triaged T27833: Clicks on button "Privacy and data protection policy" replicates text as High priority.
Oct 9 2020, 9:40 AM · webChallengeR
eisenman updated subscribers of T27828: Error message when wrong type in text field.

Another solution is to use a numeric input field that does not accept other characters.

Oct 9 2020, 9:30 AM · webChallengeR

Sep 30 2020

eisenman moved T27450: Consistent use of attribute indicating whether small metric values lead to a better rank from In Progress to Done on the challengeR (v1.0) board.
Sep 30 2020, 8:43 PM · challengeR (v1.0)
eisenman committed rCHALLENGER60750f087cfe: Merge branch 'feature/T27450-ConsistentUseOfSmallBetter' into develop (authored by eisenman).
Merge branch 'feature/T27450-ConsistentUseOfSmallBetter' into develop
Sep 30 2020, 8:39 PM
eisenman committed rCHALLENGERe5a5908287d2: Consistently use smallBetter to specify that small metric values indicate… (authored by eisenman).
Consistently use smallBetter to specify that small metric values indicate…
Sep 30 2020, 8:37 PM
eisenman committed rCHALLENGERb53c05e495e5: Clean up (authored by eisenman).
Clean up
Sep 30 2020, 8:37 PM
eisenman created T27804: Message text from violin plot is cut off in the PDF report.
Sep 30 2020, 8:31 PM · challengeR (v1.0)