User Details
User Details
- User Since
- Aug 1 2016, 12:10 PM (272 w, 5 d)
Fri, Oct 22
Fri, Oct 22
Fri, Oct 15
Fri, Oct 15
eisenman added a comment to T28746: [dash] NaN values cause error.
One solution to approach this issue is to check if NaN values are present in the data. If so, the user should be able to select the NaN handling strategy if necessary (e.g., not for case-based ranking). So what about providing the NaN handling options after the chosen ranking method is known?
Wed, Sep 29
Wed, Sep 29
eisenman added a comment to T28710: [Bug] Ggplot warning in various places of the report.
Successfully checked the proposed fix on a Windows system for downward compatibility (R 3.6.3, ggplot2 3.3.0).
Aug 2 2021
Aug 2 2021
eisenman renamed T27891: [shiny] fix bootstrapping choice in new report from fix bootstrapping choice in new report to [shiny] fix bootstrapping choice in new report.
eisenman renamed T27839: [shiny] Second report cannot be downloaded from Second report cannot be downloaded to [shiny] Second report cannot be downloaded.
eisenman renamed T27829: [shiny] Disabling button "Next" when a text field is empty from Disabling button "Next" when a text field is empty to [shiny] Disabling button "Next" when a text field is empty.
eisenman renamed T27822: [shiny] Type of files can be changed in the file dialog from Type of files can be changed in the file dialog to [shiny] Type of files can be changed in the file dialog.
eisenman renamed T27821: [shiny] Cookie notification disappears when pressing "Esc" from Cookie notification disappears when pressing "Esc" to [shiny] Cookie notification disappears when pressing "Esc".
eisenman renamed T27779: [shiny] Clarifications on page "Configure ranking" from Clarifications on page "Configure ranking" to [shiny] Clarifications on page "Configure ranking".
eisenman renamed T27786: [shiny] Navigation from page "Uncertainty analysis" to "Generate report" without option selected from Navigation from page "Uncertainty analysis" to "Generate report" without option selected to [shiny] Navigation from page "Uncertainty analysis" to "Generate report" without option selected.
eisenman renamed T27780: [shiny] Links should open in new tabs from Links should open in new tabs to [shiny] Links should open in new tabs.
eisenman renamed T27788: [shiny] Several blocks for configuration of data structure appear when switching from options "head" and "all" from Several blocks for configuration of data structure appear when switching from options "head" and "all" to [shiny] Several blocks for configuration of data structure appear when switching from options "head" and "all".
eisenman renamed T27761: [shiny] Prevent generation of report if field "name" is empty from Prevent generation of report if field "name" is empty to [shiny] Prevent generation of report if field "name" is empty.
eisenman renamed T27757: [shiny] Contradicting instruction on page "Uncertainty analysis" from Contradicting instruction on page "Uncertainty analysis" to [shiny] Contradicting instruction on page "Uncertainty analysis".
eisenman renamed T27783: [shiny] Typo in waiting pop-up from Typo in waiting pop-up to [shiny] Typo in waiting pop-up.
eisenman renamed T27764: [shiny] Detect early when insufficient number of columns are loaded from Detect early when insufficient number of columns are loaded to [shiny] Detect early when insufficient number of columns are loaded.
eisenman renamed T27833: [shiny] Clicks on button "Privacy and data protection policy" replicates text from Clicks on button "Privacy and data protection policy" replicates text to [shiny] Clicks on button "Privacy and data protection policy" replicates text.
eisenman renamed T27842: [shiny] Error while generating single-task report from Error while generating single-task report to [shiny] Error while generating single-task report.
eisenman renamed T27765: [shiny] Make sure that column specified for metric values has numeric values from Make sure that column specified for metric values has numeric values to [shiny] Make sure that column specified for metric values has numeric values.
eisenman renamed T27758: [shiny] Remove "next" button from page "Generate report" from Remove "next" button from page "Generate report" to [shiny] Remove "next" button from page "Generate report".
eisenman renamed T27766: [shiny] Update workflow figure from Update workflow figure to [shiny] Update workflow figure.
eisenman renamed T27838: [shiny] Add configuration option to indicate order of metric values from Add configuration option to indicate order of metric values to [shiny] Add configuration option to indicate order of metric values.
eisenman renamed T27835: [shiny] Change order of ranking configuration from Change order of ranking configuration to [shiny] Change order of ranking configuration.
eisenman placed T27782: [shiny] Success notification may be hidden up for grabs.
eisenman renamed T27828: [shiny] Error message when wrong type in text field from Error message when wrong type in text field to [shiny] Error message when wrong type in text field.
eisenman updated subscribers of T27828: [shiny] Error message when wrong type in text field.
eisenman renamed T27782: [shiny] Success notification may be hidden from Success notification may be hidden to [shiny] Success notification may be hidden.
eisenman renamed T27827: [shiny] Disabling button "Next" when checkbox "configure" is checked but nothing has been picked from Disabling button "Next" when checkbox "configure" is checked but nothing has been picked to [shiny] Disabling button "Next" when checkbox "configure" is checked but nothing has been picked.
eisenman renamed T27889: [shiny] display error notification when trying generating already opened report from display error notification when trying generating already opened report to [shiny] display error notification when trying generating already opened report.
eisenman renamed T27905: [shiny] Investigate download failure from Investigate download failure to [shiny] Investigate download failure.
eisenman updated subscribers of T27932: [shiny] Metric value column cannot be selected.
eisenman renamed T27932: [shiny] Metric value column cannot be selected from Metric value column cannot be selected to [shiny] Metric value column cannot be selected.
eisenman renamed T27933: [shiny] Bootstrapping is performed even if it was disabled from Bootstrapping is performed even if it was disabled to [shiny] Bootstrapping is performed even if it was disabled.
eisenman renamed T27942: [shiny] Handle path separator characters in report name from Handle path separator characters in report name to [shiny] Handle path separator characters in report name.
eisenman moved T27828: [shiny] Error message when wrong type in text field from In Progress to Backlog on the webChallengeR board.
eisenman moved T27782: [shiny] Success notification may be hidden from In Progress to Backlog on the webChallengeR board.
eisenman moved T28094: [dash] Develop web app based on Dash from In Progress to Done on the webChallengeR board.
eisenman updated subscribers of T28094: [dash] Develop web app based on Dash.
May 7 2021
May 7 2021
May 6 2021
May 6 2021
eisenman committed rCHALLENGER962cff05d226: Merge branch 'release/T28482-v1.0.2' (authored by eisenman).
Merge branch 'release/T28482-v1.0.2'
Merge tag 'v1.0.2' into develop
Bump version number
Add release notes
eisenman renamed T28453: [external] Error when all metric values are the same from bug when all metric values are the same to [external] Error when all metric values are the same.
Apr 26 2021
Apr 26 2021
eisenman moved T28465: Wrong numer of algorithms shown in report summary from In Progress to Done on the challengeR board.
eisenman committed rCHALLENGERa60677ce9cb2: Merge branch 'feature/T28465-FixNumberOfAlgorithms' into develop (authored by eisenman).
Merge branch 'feature/T28465-FixNumberOfAlgorithms' into develop
Fix typo
eisenman committed rCHALLENGERe03b3780a56c: Fix extraction of algorithm count (authored by eisenman).
Fix extraction of algorithm count
eisenman moved T28465: Wrong numer of algorithms shown in report summary from Backlog to In Progress on the challengeR board.
Apr 23 2021
Apr 23 2021
eisenman added a comment to T28453: [external] Error when all metric values are the same.
Do you have a minimum example to reproduce this? Would be great to have that in the test checklists as well.
Mar 3 2021
Mar 3 2021
eisenman added a comment to T28346: Package version mismatch during upgrade.
In this case we solved it by upgrading BiocManager. Probably the previous version did not know about the later version of "graph".
eisenman added a comment to T28346: Package version mismatch during upgrade.
The package "graph" was moved from CRAN to Bioconductor:
https://cran.r-project.org/web/packages/graph/index.html
Jan 28 2021
Jan 28 2021
eisenman closed T28194: drop restriction at least 3 algorithms required for bootstrapping as Resolved.
Jan 27 2021
Jan 27 2021
Merge tag 'v1.0.1' into develop
eisenman committed rCHALLENGER9446685d5425: Merge branch 'release/T28227-v1.0.1' (authored by eisenman).
Merge branch 'release/T28227-v1.0.1'
Add change notes
Bump version number
eisenman added a comment to T28194: drop restriction at least 3 algorithms required for bootstrapping.
This issue will be fixed in v1.0.1.
eisenman moved T28210: update citation of paper to scientific reports from In Progress to Done on the challengeR board.
eisenman committed rCHALLENGER59053e5b0b24: Merge branch 'feature/T28210-UpdateCitation' into develop (authored by eisenman).
Merge branch 'feature/T28210-UpdateCitation' into develop
Update citation
eisenman added a comment to T28210: update citation of paper to scientific reports.
An update is also required in report.Rmd, visualizations.Rmd and CITATION.
This issue will be fixed in v1.0.1.
eisenman moved T28202: Error in stabilityByAlgorithm if only one case is used from In Progress to Done on the challengeR board.
This issue will be fixed in v1.0.1.
eisenman added a comment to T28202: Error in stabilityByAlgorithm if only one case is used.
Seems fine!
eisenman moved T28193: bug in stabilityByAlgorithm.bootstrap.list from In Progress to Done on the challengeR board.
This issue will be fixed in v1.0.1.
eisenman committed rCHALLENGER06191a233e37: Merge branch 'feature/T28193-UnitTestsMoreTasksThanAlgorithms' into develop (authored by eisenman).
Merge branch 'feature/T28193-UnitTestsMoreTasksThanAlgorithms' into develop
Jan 26 2021
Jan 26 2021
eisenman added a comment to T28193: bug in stabilityByAlgorithm.bootstrap.list.
The unit tests can be found here: feature/T28193-UnitTestsMoreTasksThanAlgorithms
eisenman committed rCHALLENGER88533dcc2c22: Test that stacked frequency plot for visualizing ranking stability by algorithm… (authored by eisenman).
Test that stacked frequency plot for visualizing ranking stability by algorithm…
eisenman committed rCHALLENGERe1cfc864d52c: Test that PDF report for multi-task data set with bootstrapping is created… (authored by eisenman).
Test that PDF report for multi-task data set with bootstrapping is created…
eisenman committed rCHALLENGEReea8960f2cd0: Test that stacked bar plot for visualizing ranking stability by algorithm… (authored by eisenman).
Test that stacked bar plot for visualizing ranking stability by algorithm…
eisenman committed rCHALLENGERecd51e31c4e3: Test that stacked frequency plot for visualizing ranking stability by algorithm… (authored by eisenman).
Test that stacked frequency plot for visualizing ranking stability by algorithm…
eisenman committed rCHALLENGER28b8d1693b58: Test that stacked bar plot for visualizing ranking stability by algorithm… (authored by eisenman).
Test that stacked bar plot for visualizing ranking stability by algorithm…
eisenman committed rCHALLENGERc2b0873eb0f3: Test that blob plot for visualizing ranking stability by algorithm returns one… (authored by eisenman).
Test that blob plot for visualizing ranking stability by algorithm returns one…
eisenman committed rCHALLENGER8d0b5eeeee9b: Test that blob plot for visualizing ranking stability by algorithm returns one… (authored by eisenman).
Test that blob plot for visualizing ranking stability by algorithm returns one…
eisenman moved T28193: bug in stabilityByAlgorithm.bootstrap.list from Done to In Progress on the challengeR board.
I will extend the unit tests to show that this issue is solved.