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eisenman (Matthias Eisenmann)
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Aug 1 2016, 12:10 PM (238 w, 5 d)

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Jan 28 2021

eisenman closed T28227: challangeR Patch v1.0.1 as Resolved.
Jan 28 2021, 1:04 PM · challengeR
eisenman closed T28201: Avoid blank pages in report as Resolved.
Jan 28 2021, 1:04 PM · challengeR
eisenman closed T28194: drop restriction at least 3 algorithms required for bootstrapping as Resolved.
Jan 28 2021, 1:04 PM · challengeR
eisenman closed T28193: bug in stabilityByAlgorithm.bootstrap.list as Resolved.
Jan 28 2021, 1:04 PM · challengeR
eisenman closed T28202: Error in stabilityByAlgorithm if only one case is used as Resolved.
Jan 28 2021, 1:03 PM · challengeR
eisenman closed T28210: update citation of paper to scientific reports as Resolved.
Jan 28 2021, 1:03 PM · challengeR
eisenman moved T28227: challangeR Patch v1.0.1 from In Progress to Done on the challengeR board.
Jan 28 2021, 11:22 AM · challengeR

Jan 27 2021

eisenman committed rCHALLENGERe9fe3abbeeee: Merge tag 'v1.0.1' into develop (authored by eisenman).
Merge tag 'v1.0.1' into develop
Jan 27 2021, 7:07 PM
eisenman committed rCHALLENGER9446685d5425: Merge branch 'release/T28227-v1.0.1' (authored by eisenman).
Merge branch 'release/T28227-v1.0.1'
Jan 27 2021, 7:07 PM
eisenman committed rCHALLENGER24eb5f4e9b9b: Add change notes (authored by eisenman).
Add change notes
Jan 27 2021, 7:02 PM
eisenman committed rCHALLENGER0a860ed53187: Bump version number (authored by eisenman).
Bump version number
Jan 27 2021, 7:02 PM
eisenman added a comment to T28194: drop restriction at least 3 algorithms required for bootstrapping.

This issue will be fixed in v1.0.1.

Jan 27 2021, 6:49 PM · challengeR
eisenman moved T28227: challangeR Patch v1.0.1 from Backlog to In Progress on the challengeR board.
Jan 27 2021, 6:29 PM · challengeR
eisenman triaged T28227: challangeR Patch v1.0.1 as High priority.
Jan 27 2021, 6:29 PM · challengeR
eisenman moved T28210: update citation of paper to scientific reports from In Progress to Done on the challengeR board.
Jan 27 2021, 6:22 PM · challengeR
eisenman committed rCHALLENGER59053e5b0b24: Merge branch 'feature/T28210-UpdateCitation' into develop (authored by eisenman).
Merge branch 'feature/T28210-UpdateCitation' into develop
Jan 27 2021, 6:21 PM
eisenman committed rCHALLENGER7abba0882e24: Update citation (authored by eisenman).
Update citation
Jan 27 2021, 6:20 PM
eisenman added a comment to T28210: update citation of paper to scientific reports.

An update is also required in report.Rmd, visualizations.Rmd and CITATION.

Jan 27 2021, 5:33 PM · challengeR
eisenman claimed T28210: update citation of paper to scientific reports.

This issue will be fixed in v1.0.1.

Jan 27 2021, 5:25 PM · challengeR
eisenman moved T28202: Error in stabilityByAlgorithm if only one case is used from In Progress to Done on the challengeR board.

This issue will be fixed in v1.0.1.

Jan 27 2021, 5:22 PM · challengeR
eisenman added a comment to T28202: Error in stabilityByAlgorithm if only one case is used.

Seems fine!

Jan 27 2021, 5:21 PM · challengeR
eisenman moved T28193: bug in stabilityByAlgorithm.bootstrap.list from In Progress to Done on the challengeR board.

This issue will be fixed in v1.0.1.

Jan 27 2021, 3:37 PM · challengeR
eisenman committed rCHALLENGER06191a233e37: Merge branch 'feature/T28193-UnitTestsMoreTasksThanAlgorithms' into develop (authored by eisenman).
Merge branch 'feature/T28193-UnitTestsMoreTasksThanAlgorithms' into develop
Jan 27 2021, 3:33 PM

Jan 26 2021

eisenman added a comment to T28193: bug in stabilityByAlgorithm.bootstrap.list.

The unit tests can be found here: feature/T28193-UnitTestsMoreTasksThanAlgorithms

Jan 26 2021, 8:46 PM · challengeR
eisenman committed rCHALLENGER88533dcc2c22: Test that stacked frequency plot for visualizing ranking stability by algorithm… (authored by eisenman).
Test that stacked frequency plot for visualizing ranking stability by algorithm…
Jan 26 2021, 8:35 PM
eisenman committed rCHALLENGERe1cfc864d52c: Test that PDF report for multi-task data set with bootstrapping is created… (authored by eisenman).
Test that PDF report for multi-task data set with bootstrapping is created…
Jan 26 2021, 8:35 PM
eisenman committed rCHALLENGEReea8960f2cd0: Test that stacked bar plot for visualizing ranking stability by algorithm… (authored by eisenman).
Test that stacked bar plot for visualizing ranking stability by algorithm…
Jan 26 2021, 8:35 PM
eisenman committed rCHALLENGERecd51e31c4e3: Test that stacked frequency plot for visualizing ranking stability by algorithm… (authored by eisenman).
Test that stacked frequency plot for visualizing ranking stability by algorithm…
Jan 26 2021, 8:35 PM
eisenman committed rCHALLENGER28b8d1693b58: Test that stacked bar plot for visualizing ranking stability by algorithm… (authored by eisenman).
Test that stacked bar plot for visualizing ranking stability by algorithm…
Jan 26 2021, 8:35 PM
eisenman committed rCHALLENGERc2b0873eb0f3: Test that blob plot for visualizing ranking stability by algorithm returns one… (authored by eisenman).
Test that blob plot for visualizing ranking stability by algorithm returns one…
Jan 26 2021, 8:35 PM
eisenman committed rCHALLENGER8d0b5eeeee9b: Test that blob plot for visualizing ranking stability by algorithm returns one… (authored by eisenman).
Test that blob plot for visualizing ranking stability by algorithm returns one…
Jan 26 2021, 8:35 PM
eisenman moved T28193: bug in stabilityByAlgorithm.bootstrap.list from Done to In Progress on the challengeR board.

I will extend the unit tests to show that this issue is solved.

Jan 26 2021, 8:04 PM · challengeR
eisenman triaged T28202: Error in stabilityByAlgorithm if only one case is used as High priority.
Jan 26 2021, 8:00 PM · challengeR
eisenman closed T27867: report corrections as Resolved.
Jan 26 2021, 4:22 PM · challengeR (v1.0)
eisenman edited projects for T27867: report corrections, added: challengeR (v1.0); removed challengeR.
Jan 26 2021, 4:22 PM · challengeR (v1.0)
eisenman closed T27832: Complete troublshooting as Resolved.
Jan 26 2021, 4:21 PM · challengeR (v1.0)
eisenman edited projects for T27832: Complete troublshooting, added: challengeR (v1.0); removed challengeR.
Jan 26 2021, 4:21 PM · challengeR (v1.0)
eisenman moved T28201: Avoid blank pages in report from In Progress to Done on the challengeR board.
Jan 26 2021, 4:19 PM · challengeR
eisenman committed rCHALLENGERd5de45f65829: Merge branch 'feature/T28201-FixPageBreak' into develop (authored by eisenman).
Merge branch 'feature/T28201-FixPageBreak' into develop
Jan 26 2021, 4:08 PM
eisenman committed rCHALLENGER95a457406a7c: Fix page break (authored by eisenman).
Fix page break
Jan 26 2021, 4:06 PM
eisenman moved T28201: Avoid blank pages in report from Backlog to In Progress on the challengeR board.
Jan 26 2021, 4:02 PM · challengeR
eisenman triaged T28201: Avoid blank pages in report as Low priority.
Jan 26 2021, 4:02 PM · challengeR

Jan 25 2021

eisenman added a comment to T28193: bug in stabilityByAlgorithm.bootstrap.list.

What exactly is the error? What are the steps to reproduce this? Runtime error or wrong content in report?

Jan 25 2021, 6:32 PM · challengeR

Jan 22 2021

eisenman added a comment to T28100: [dash] Decide on a file management strategy.

Files that cannot be read by a CSV reader should be deleted immediately to avoid that potentially malicious resources are hosted on this public server. A simple check for file extension is not enough. Arbitrary files can be uploaded by just adding the extension *.csv.

Jan 22 2021, 7:45 PM · webChallengeR

Dec 20 2020

eisenman closed T28125: challangeR Release v1.0.0 as Resolved.
Dec 20 2020, 9:34 PM · challengeR (v1.0)
eisenman moved T28125: challangeR Release v1.0.0 from In Progress to Done on the challengeR (v1.0) board.
Dec 20 2020, 9:34 PM · challengeR (v1.0)
eisenman closed T27396: Represent single-task challenge as multi-task challenge with one task as Resolved.
Dec 20 2020, 9:34 PM · challengeR (v1.0)
eisenman closed T27325: Plot titles in rankingHeatmap missing in multi task report as Resolved.
Dec 20 2020, 9:34 PM · challengeR (v1.0)
eisenman closed T27404: Fix the 2.1 section title format of the report as Resolved.
Dec 20 2020, 9:34 PM · challengeR (v1.0)
eisenman closed T27408: Description of cluster analysis contains unnecessary symbol as Resolved.
Dec 20 2020, 9:33 PM · challengeR (v1.0)
eisenman closed T27410: Correct description of variability of achieved rankings across tasks as Resolved.
Dec 20 2020, 9:33 PM · challengeR (v1.0)
eisenman closed T27281: Implement tests for ranking method "rank-then-aggregate" as Resolved.
Dec 20 2020, 9:33 PM · challengeR (v1.0)
eisenman closed T27412: Description of variability of achieved rankings across tasks is missing in short report as Resolved.
Dec 20 2020, 9:33 PM · challengeR (v1.0)
eisenman closed T27316: Aggregate-than-rank does not throw an error when an invalid NA treatment option is specified as Resolved.
Dec 20 2020, 9:33 PM · challengeR (v1.0)
eisenman closed T27302: Add sections to the readme as Resolved.
Dec 20 2020, 9:33 PM · challengeR (v1.0)
eisenman closed T27237: Implement tests for ranking method "aggregate-then-rank" as Resolved.
Dec 20 2020, 9:32 PM · challengeR (v1.0)
eisenman closed T27301: Add on boarding tutorial as Resolved.
Dec 20 2020, 9:32 PM · challengeR (v1.0)
eisenman closed T27244: Implement tests for the "challenge" class as Resolved.
Dec 20 2020, 9:32 PM · challengeR (v1.0)
eisenman closed T27236: Set up test infrastructure as Resolved.
Dec 20 2020, 9:32 PM · challengeR (v1.0)
eisenman closed T27407: Warnings are shown in multi-task challenge report for violin plot as Resolved.
Dec 20 2020, 9:32 PM · challengeR (v1.0)
eisenman closed T27656: make sure data set is data.frame as Resolved.
Dec 20 2020, 9:32 PM · challengeR (v1.0)
eisenman closed T27411: Improve labels in cluster dendrogram as Resolved.
Dec 20 2020, 9:32 PM · challengeR (v1.0)
eisenman closed T27327: warning in docx report as Resolved.
Dec 20 2020, 9:32 PM · challengeR (v1.0)
eisenman closed T27449: Consistent handling of plots created for multi-task data sets as Resolved.
Dec 20 2020, 9:32 PM · challengeR (v1.0)
eisenman closed T27287: is warning given if na.treat unspecified in rank-first and obligatory otherwise as Resolved.
Dec 20 2020, 9:32 PM · challengeR (v1.0)
eisenman closed T27694: Fix failing unit tests as Resolved.
Dec 20 2020, 9:32 PM · challengeR (v1.0)
eisenman closed T27253: Notify user when multi-task data set is interpreted as single-task data set as Resolved.
Dec 20 2020, 9:31 PM · challengeR (v1.0)
eisenman closed T27385: Variables holding the aggregated value are named differently for single- and multi-task challenges as Resolved.
Dec 20 2020, 9:31 PM · challengeR (v1.0)
eisenman closed T27657: When missing algorithm performances are added as NAs, task is also NA as Resolved.
Dec 20 2020, 9:31 PM · challengeR (v1.0)
eisenman closed T27715: Specify minimum required versions of dependencies as Resolved.
Dec 20 2020, 9:31 PM · challengeR (v1.0)
eisenman closed T27252: Multiple cases per algorithm are not detected when missing data was added before as Resolved.
Dec 20 2020, 9:30 PM · challengeR (v1.0)
eisenman closed T27740: Add missing imports as Resolved.
Dec 20 2020, 9:30 PM · challengeR (v1.0)
eisenman closed T27658: LaTeX Warning: There were undefined references as Resolved.
Dec 20 2020, 9:30 PM · challengeR (v1.0)
eisenman closed T27475: Legend of blob plot has missing legend title and algorithms as Resolved.
Dec 20 2020, 9:30 PM · challengeR (v1.0)
eisenman closed T27474: Legend of line plot has missing legend title and algorithm as Resolved.
Dec 20 2020, 9:30 PM · challengeR (v1.0)
eisenman closed T27677: Update text in reports (feedback from Lena) as Resolved.
Dec 20 2020, 9:30 PM · challengeR (v1.0)
eisenman closed T27769: Top x performing algorithms are not mentioned in the reports anymore as Resolved.
Dec 20 2020, 9:30 PM · challengeR (v1.0)
eisenman closed T27338: Report contains misleading information on missing values as Resolved.
Dec 20 2020, 9:30 PM · challengeR (v1.0)
eisenman closed T27773: package dependencies as Resolved.
Dec 20 2020, 9:28 PM · challengeR (v1.0)
eisenman closed T27294: add multiple figure output formats in report with option clean=TRUE as Resolved.
Dec 20 2020, 9:28 PM · challengeR (v1.0)
eisenman closed T27337: Report contains wrong ranking method when rank-then-aggregate is used as Resolved.
Dec 20 2020, 9:28 PM · challengeR (v1.0)
eisenman closed T27452: Provide plot function for dendrogram as Resolved.
Dec 20 2020, 9:28 PM · challengeR (v1.0)
eisenman closed T27714: Report contains weird R output as Resolved.
Dec 20 2020, 9:28 PM · challengeR (v1.0)
eisenman closed T27453: Create complete network plot in its function as Resolved.
Dec 20 2020, 9:28 PM · challengeR (v1.0)
eisenman closed T27776: Failing unit tests for subset of tasks as Resolved.
Dec 20 2020, 9:28 PM · challengeR (v1.0)
eisenman closed T27685: changes in subset() as Resolved.
Dec 20 2020, 9:28 PM · challengeR (v1.0)
eisenman closed T27777: Failing unit tests for challenge as Resolved.
Dec 20 2020, 9:28 PM · challengeR (v1.0)
eisenman closed T27774: wrong text in report on algorithm subsets as Resolved.
Dec 20 2020, 9:28 PM · challengeR (v1.0)
eisenman closed T27447: significanceMap function raises warning about deprecated function call as Resolved.
Dec 20 2020, 9:27 PM · challengeR (v1.0)
eisenman closed T27770: Inconsistency in report description as Resolved.
Dec 20 2020, 9:27 PM · challengeR (v1.0)
eisenman closed T27282: Implement tests for ranking method "test-then-rank" based on Wilcoxon signed rank test as Resolved.
Dec 20 2020, 9:27 PM · challengeR (v1.0)
eisenman closed T27686: tutorial can be added as vignette to embed it in the package as Resolved.
Dec 20 2020, 9:27 PM · challengeR (v1.0)
eisenman closed T27450: Consistent use of attribute indicating whether small metric values lead to a better rank as Resolved.
Dec 20 2020, 9:26 PM · challengeR (v1.0)
eisenman closed T27804: Message text from violin plot is cut off in the PDF report as Resolved.
Dec 20 2020, 9:26 PM · challengeR (v1.0)
eisenman closed T27793: Plot titles are missing in some line plots as Resolved.
Dec 20 2020, 9:26 PM · challengeR (v1.0)
eisenman closed T27778: turn off networks as Resolved.
Dec 20 2020, 9:26 PM · challengeR (v1.0)
eisenman closed T27456: Extraction of task subset from (bootstrap) ranking does not raise an error for invalid task name as Resolved.
Dec 20 2020, 9:26 PM · challengeR (v1.0)
eisenman closed T27794: Stacked frequency plots should switch to single page layout as Resolved.
Dec 20 2020, 9:26 PM · challengeR (v1.0)
eisenman closed T27802: Revise signature of function testThenRank as Resolved.
Dec 20 2020, 9:26 PM · challengeR (v1.0)
eisenman closed T27922: Remove network plot from report overview as Resolved.
Dec 20 2020, 9:25 PM · challengeR (v1.0)
MITK · MIC · CAMI · DKFZ