• nnunet requires some paths to be defined, and they are currently not defined, e.g. RESULTS_PATH
• Running carmpose_verse_CT --inputDir INPUTDIR --outputDIR OUTPUTDIR breaks with the following error

• Running the commands breaks with the error FileNotFoundError: [Errno 2] No such file or directory: '.../Elements/Data/Spine/DRR/patients_LV4_tmp.txt'

• There are too many hard coded paths in the config files of deep drr: deep_drr/deep_drr/tools/deep_drr_config.py. Some of the paths also seem to be wrong and should be corrected

• In Ubuntu 20.04 libtiff installtion might be broken and the following error might appear.

• References to publications from Kausch et. al. should be added to the README.md
• package versions for deep_drr and c_arm pose should both be names following semvers, e.g. 0.0.1
• deep_drr setup defines wrong paths to binary scripts, it should be:

Ideally, the package versions should be specified in the requirements.txt files.

IS this task still active? If not please close it 😄