Page MenuHomePhabricator
Feed All Stories

Fri, Sep 30

floca claimed T29306: [Segmentation] Provide Close tool (behavior of old Fill tool).
Fri, Sep 30, 3:48 PM · Request for Discussion, MITK (v2022.10)
floca renamed T29306: [Segmentation] Provide Close tool (behavior of old Fill tool) from [Segmentation] Rename Fill tool to [Segmentation] Provide Close tool (behavior of old Fill tool).
Fri, Sep 30, 3:48 PM · Request for Discussion, MITK (v2022.10)
kalali placed T29269: Check geometries in SliceNavigationController and BaseRenderer up for grabs.
Fri, Sep 30, 10:12 AM · Next Milestone, MITK
kalali added a revision to T29289: Compare responsibilities of QmitkSliceNavigationController related classes: Unknown Object (Differential Revision).
Fri, Sep 30, 10:12 AM · MITK
kalali added a revision to T29316: Rename QmitkSliderNavigatorWidget and clean variable names: Unknown Object (Differential Revision).
Fri, Sep 30, 10:07 AM · MITK (v2022.10)

Thu, Sep 29

kalali closed Restricted Maniphest Task, a subtask of T26496: [mxn multi widget] Re-initializations reset all render windows, as Resolved.
Thu, Sep 29, 6:03 PM · MITK (v2022.10), Restricted Project
leamaya updated leamaya.
Thu, Sep 29, 12:12 PM
leamaya updated leamaya.
Thu, Sep 29, 12:12 PM

Wed, Sep 28

floca moved T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures. from Backlog to Cycle on the MITK (v2022.10) board.
Wed, Sep 28, 10:37 AM · MITK (v2022.10)
floca claimed T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures..
Wed, Sep 28, 10:37 AM · MITK (v2022.10)
floca claimed T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels.
Wed, Sep 28, 10:36 AM · MITK (v2022.10), Request for Discussion
floca claimed T29132: [MultiLabel Segmentation] Define desired behavior of fill / erase tool.
Wed, Sep 28, 10:35 AM · MITK (v2022.10)
floca moved T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep from Cycle to Segmentation on the MITK (v2022.10) board.
Wed, Sep 28, 10:34 AM · MITK (v2022.10)
floca moved T28499: Refactor/rewrite RegionGrowing3D tool from Cycle to Segmentation on the MITK (v2022.10) board.
Wed, Sep 28, 10:34 AM · MITK (v2022.10), Request for Discussion
floca moved T28499: Refactor/rewrite RegionGrowing3D tool from Segmentation to Cycle on the MITK (v2022.10) board.
Wed, Sep 28, 10:33 AM · MITK (v2022.10), Request for Discussion
floca moved T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep from Segmentation to Cycle on the MITK (v2022.10) board.
Wed, Sep 28, 10:33 AM · MITK (v2022.10)
floca moved T29307: [Segmentation] Add a fill tool like e.g. GIMP or Photoshop has from Backlog to Cycle on the MITK (v2022.10) board.
Wed, Sep 28, 10:33 AM · Next Milestone, Request for Discussion, MITK (v2022.10)
floca added a comment to T24398: Dicom plugin: Retrieve does not work.

Thank you 🙏

Wed, Sep 28, 9:43 AM · Next Milestone, MITK, Request for Discussion, Missing Info
kislinsk added a comment to T29317: Clean up DICOM Browser plugin.

Pushed new branch to rMITK MITK: bugfix/T29317-CleanUpDICOMBrowser.

Wed, Sep 28, 9:40 AM · Next Milestone, MITK
kislinsk triaged T29317: Clean up DICOM Browser plugin as Normal priority.
Wed, Sep 28, 9:37 AM · Next Milestone, MITK
kislinsk added a comment to T24398: Dicom plugin: Retrieve does not work.

Our side or also the CTK part.

Hm, lets put it as known issue and discuss its priority when we plan the spring release.

Wed, Sep 28, 9:35 AM · Next Milestone, MITK, Request for Discussion, Missing Info
s349i updated the task description for T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable.
Wed, Sep 28, 9:16 AM · MITK (v2022.10), Checklist
floca added a revision to T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures.: Unknown Object (Differential Revision).
Wed, Sep 28, 9:15 AM · MITK (v2022.10)
floca added a revision to T29078: [Segmentation] Erase tool has unclear edge cases: Unknown Object (Differential Revision).
Wed, Sep 28, 9:15 AM · Next Milestone, Checklist
floca added a revision to T29132: [MultiLabel Segmentation] Define desired behavior of fill / erase tool: Unknown Object (Differential Revision).
Wed, Sep 28, 9:15 AM · MITK (v2022.10)
floca added a revision to T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels: Unknown Object (Differential Revision).
Wed, Sep 28, 9:15 AM · MITK (v2022.10), Request for Discussion

Tue, Sep 27

floca added a comment to T24398: Dicom plugin: Retrieve does not work.

thank you for looking into that matter.

Tue, Sep 27, 5:38 PM · Next Milestone, MITK, Request for Discussion, Missing Info
floca edited projects for T24398: Dicom plugin: Retrieve does not work, added: MITK, Next Milestone; removed MITK (v2022.10).

I noticed that the whole plugin is a complete mess BTW and urgently needs at least some clean up to see all the potentials for improvements and bug fixes. :/

Our side or also the CTK part.

Tue, Sep 27, 5:38 PM · Next Milestone, MITK, Request for Discussion, Missing Info
kalali added a parent task for T29316: Rename QmitkSliderNavigatorWidget and clean variable names: T29289: Compare responsibilities of QmitkSliceNavigationController related classes.
Tue, Sep 27, 12:43 PM · MITK (v2022.10)
kalali added a subtask for T29289: Compare responsibilities of QmitkSliceNavigationController related classes: T29316: Rename QmitkSliderNavigatorWidget and clean variable names.
Tue, Sep 27, 12:43 PM · MITK
kalali updated the task description for T29289: Compare responsibilities of QmitkSliceNavigationController related classes.
Tue, Sep 27, 12:42 PM · MITK
kalali updated the task description for T29289: Compare responsibilities of QmitkSliceNavigationController related classes.
Tue, Sep 27, 12:17 PM · MITK
kislinsk added a comment to T24398: Dicom plugin: Retrieve does not work.

I looked into the dicombrowser plugin and found out that the directory on Windows is something like %APPDATA%/../Local/Temp/TmpDicomFolder.************. However I didn't see pop up any files after retrieve.

Tue, Sep 27, 10:56 AM · Next Milestone, MITK, Request for Discussion, Missing Info
kalali triaged T29316: Rename QmitkSliderNavigatorWidget and clean variable names as Normal priority.
Tue, Sep 27, 9:52 AM · MITK (v2022.10)

Mon, Sep 26

floca claimed T29307: [Segmentation] Add a fill tool like e.g. GIMP or Photoshop has.
Mon, Sep 26, 6:10 PM · Next Milestone, Request for Discussion, MITK (v2022.10)
s349i updated the task description for T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable.
Mon, Sep 26, 9:41 AM · MITK (v2022.10), Checklist
s349i updated the task description for T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable.
Mon, Sep 26, 9:28 AM · MITK (v2022.10), Checklist

Fri, Sep 23

j762e added a comment to T28851: [SEG] Add ITK GrowCut as segmentation tool.

Pushed new branch to rMITK MITK: feature/T28851-AddITKGrowCutTool.

Fri, Sep 23, 5:49 PM · MITK (v2022.10)
j762e added a comment to T29313: Add a Test to check if the GrowCut algorithm produces a different output.

What do you mean with removed? Is the code still somewhere? If it was functional it would make no sense if someone has to write a new test from scratch.

Tests work again. So if the DLL-Exception/failing tests was the reason for removing it, you can add it again.

Fri, Sep 23, 5:46 PM · MITK (v2022.10)
j762e attached a referenced file: F2572275: mitkGrowCutFilterTest.cpp.
Fri, Sep 23, 5:37 PM · MITK (v2022.10)
j762e attached a referenced file: F2572274: files.cmake.
Fri, Sep 23, 5:37 PM · MITK (v2022.10)
j762e attached a referenced file: F2572277: ExpectedResultImage.nrrd.
Fri, Sep 23, 5:37 PM · MITK (v2022.10)
j762e attached a referenced file: F2572276: InputSeedImage.nrrd.
Fri, Sep 23, 5:37 PM · MITK (v2022.10)
scholzpa added a comment to T29166: GSP: EndoCV detection challenge.

This is your job @amiiney :)

Fri, Sep 23, 4:14 PM · Restricted Project
holzwart added a comment to T29166: GSP: EndoCV detection challenge.

Please move this Task to the IMSY Community Day Issue Board in GitLab:

Fri, Sep 23, 3:15 PM · Restricted Project
s434n closed T29308: [Segmentation] Check/revise check list of the fill tool and the erase tool , a subtask of T29132: [MultiLabel Segmentation] Define desired behavior of fill / erase tool, as Resolved.
Fri, Sep 23, 3:01 PM · MITK (v2022.10)
s434n closed T29308: [Segmentation] Check/revise check list of the fill tool and the erase tool as Resolved.

I have updated the checklist according to the documented / actual function of the two tools.
However, I had to add a note regarding the "remove everything" functionality of the erase tool, which currently does not work correctly (?) when a segmented region touches the boundary of the image (see T29078 example 2).

Fri, Sep 23, 3:01 PM · MITK (v2022.10)
d587s added a member for ARGOS UI: fsagodi.
Fri, Sep 23, 2:01 PM
s434n claimed T29308: [Segmentation] Check/revise check list of the fill tool and the erase tool .
Fri, Sep 23, 12:23 PM · MITK (v2022.10)
floca claimed T29078: [Segmentation] Erase tool has unclear edge cases.
Fri, Sep 23, 10:59 AM · Next Milestone, Checklist
kislinsk moved T24398: Dicom plugin: Retrieve does not work from Backlog to MITK Meeting on the Request for Discussion board.
Fri, Sep 23, 9:50 AM · Next Milestone, MITK, Request for Discussion, Missing Info
kislinsk added a project to T24398: Dicom plugin: Retrieve does not work: Request for Discussion.

I just tried to retrieve data from dicomserver.co.uk and I am able to query and kind of retrieve data. A repeated retrieve even tells me that existing files are overriden. At least that is what the console output tells me. But where are the retrieved images supposed to be stored? And shouldn't the retrieved images appear somewhere in the DICOM editor?

Fri, Sep 23, 9:50 AM · Next Milestone, MITK, Request for Discussion, Missing Info

Thu, Sep 22

kalali added a comment to T29313: Add a Test to check if the GrowCut algorithm produces a different output.

The idea was to provide an additional differential here for this task that adds the test so yes, the code is there and will be visible in the differential.

Thu, Sep 22, 8:03 PM · MITK (v2022.10)
j860d committed rKAAPANAe1f97cf14dbc: Replace Elasticsearch and Kibana with OpenSearch (authored by j860d).
Replace Elasticsearch and Kibana with OpenSearch
Thu, Sep 22, 5:57 PM
floca added a comment to T29313: Add a Test to check if the GrowCut algorithm produces a different output.

What do you mean with removed? Is the code still somewhere? If it was functional it would make no sense if someone has to write a new test from scratch.

Thu, Sep 22, 4:44 PM · MITK (v2022.10)
j860d committed rKAAPANA1c5ac4079afa: fix http put conflict when opening os dashboard for the first time (authored by j860d).
fix http put conflict when opening os dashboard for the first time
Thu, Sep 22, 3:58 PM
j762e added a comment to T29311: Further observation of the GrowCut segmentation tool on 4D images.

I have added a checklist for growcut into Checklist Segmentation – 3D Segmentation_EN.docx in Nextcloud.
There are no specific test cases (checklists) for other tools on 4D images as far as I know/have seen.
I think this Task should just kept in mind because the growcut tool is new.

Thu, Sep 22, 3:57 PM · MITK (v2022.10)
j762e added a comment to T29313: Add a Test to check if the GrowCut algorithm produces a different output.

I already wrote a test, but removed it for now so I could create the Diff (D712).
Now the Diff needs to be accepted and the T28851-AddImagesForGrowCutSegmentationTest Branch needs to be merged into the mitkdata repository (https://phabricator.mitk.org/source/mitkdata/browse/T28851-AddImagesForGrowCutSegmentationTest/) so that the test does not fail.
I add the files here in case the process is not through before I leave.

Thu, Sep 22, 3:36 PM · MITK (v2022.10)
j860d committed rKAAPANA0430e1a477cc: add non-saved file from last merge (authored by j860d).
add non-saved file from last merge
Thu, Sep 22, 2:02 PM
j860d committed rKAAPANAd20bd9cbf3e5: Merge branch 'develop' into feature/opensearch-jonasr (authored by j860d).
Merge branch 'develop' into feature/opensearch-jonasr
Thu, Sep 22, 1:58 PM
u851l committed rKAAPANA2c7aba299f47: kube-helm: make /extensions compatible with landing page (authored by u851l).
kube-helm: make /extensions compatible with landing page
Thu, Sep 22, 12:48 PM
k688h committed rKAAPANA0afed75f38a4: Refine output warnings for preflight-checks (authored by k688h).
Refine output warnings for preflight-checks
Thu, Sep 22, 12:48 PM
kalali closed T29219: StatusBar / mouse scrolling is broken as Resolved.
Thu, Sep 22, 11:26 AM · MITK (v2022.10)
kalali committed rMITKe36380da1e5f: Update the status bar correctly (authored by kalali).
Update the status bar correctly
Thu, Sep 22, 11:25 AM
kalali committed rMITK2eee153e5804: Merge remote-tracking branch 'maleike/fix-status-bar-updates' into develop (authored by kalali).
Merge remote-tracking branch 'maleike/fix-status-bar-updates' into develop
Thu, Sep 22, 11:25 AM
maleike committed rMITK125b15152e2e: Force a rendering update before updating the status bar. (authored by maleike).
Force a rendering update before updating the status bar.
Thu, Sep 22, 11:25 AM
kalali closed T29265: QmitkSelectableGLWidget is not used anymore and can be removed as Resolved.
Thu, Sep 22, 11:22 AM · MITK (v2022.10)
kalali committed rMITK0c57d7ad6218: Remove unused QmitkSelectableGLWidget (authored by kalali).
Remove unused QmitkSelectableGLWidget
Thu, Sep 22, 11:22 AM
kalali committed rMITK3edfcc488dc7: Remove QmitkSelectableGLWidget and unnecessary includes (authored by kalali).
Remove QmitkSelectableGLWidget and unnecessary includes
Thu, Sep 22, 11:22 AM

Wed, Sep 21

kalali added a revision to T29265: QmitkSelectableGLWidget is not used anymore and can be removed: Unknown Object (Differential Revision).
Wed, Sep 21, 7:35 PM · MITK (v2022.10)
kalali claimed T29265: QmitkSelectableGLWidget is not used anymore and can be removed.
Wed, Sep 21, 5:34 PM · MITK (v2022.10)
k688h removed a project from T28357: Running Isolated container in Kaapana ( Instead of Default Docker): Request for Discussion.
Wed, Sep 21, 2:58 PM · Restricted Project, Kaapana (internal)
k688h removed a project from T28043: TFDA MVP1-Tasks:Tools and Technologies: Request for Discussion.
Wed, Sep 21, 2:58 PM · Restricted Project, Kaapana (internal)
k688h triaged T28167: System set up: Multi Provider Site Version as Normal priority.
Wed, Sep 21, 2:57 PM · Restricted Project
k688h removed a parent task for T29016: TFDA MVP - Airflow 2 Migration + Latest Kaapana Dev Branch Integration: Unknown Object (Maniphest Task).
Wed, Sep 21, 2:41 PM · Restricted Project
floca added a comment to T29311: Further observation of the GrowCut segmentation tool on 4D images.

Do we have a checklist for growcut? I guess that would be the place to add additional cases, wouldn't it?

Wed, Sep 21, 2:05 PM · MITK (v2022.10)
floca added a comment to T29313: Add a Test to check if the GrowCut algorithm produces a different output.

Haven't you added a test alread? Or are you thinking about other test cases?
If this is the case, could you give a bit more input regarding your thoughts.

Wed, Sep 21, 2:04 PM · MITK (v2022.10)
m391k committed rKAAPANA4367871648cc: BDC - DataLoader selects new datasample if label is invalid (authored by m391k).
BDC - DataLoader selects new datasample if label is invalid
Wed, Sep 21, 1:48 PM
j762e triaged T29313: Add a Test to check if the GrowCut algorithm produces a different output as Normal priority.
Wed, Sep 21, 1:39 PM · MITK (v2022.10)
j762e renamed T28851: [SEG] Add ITK GrowCut as segmentation tool from [SEG] Add ITK Growcut as segmentation tool to [SEG] Add ITK GrowCut as segmentation tool.
Wed, Sep 21, 1:33 PM · MITK (v2022.10)
j762e renamed T28851: [SEG] Add ITK GrowCut as segmentation tool from [SEG] Evaluate if we should add itkGrowCut as a tool to [SEG] Add ITK Growcut as segmentation tool.
Wed, Sep 21, 1:33 PM · MITK (v2022.10)
j762e triaged T29312: Add support for using layers other than layer 0 of the current LabelSetImage as Wishlist priority.
Wed, Sep 21, 1:29 PM · MITK (v2022.10)
j762e triaged T29311: Further observation of the GrowCut segmentation tool on 4D images as Normal priority.
Wed, Sep 21, 1:26 PM · MITK (v2022.10)
j762e triaged T29310: [ITK] Check if ITK 5.3 adds the GrowCut remote module by default as Normal priority.
Wed, Sep 21, 1:24 PM · MITK (v2022.10)
j762e triaged T29309: [GrowCut] Further remarks regarding GrowCut as Low priority.
Wed, Sep 21, 1:22 PM · MITK (v2022.10)
floca moved T29308: [Segmentation] Check/revise check list of the fill tool and the erase tool from Backlog to Tests/Checklists on the MITK (v2022.10) board.
Wed, Sep 21, 12:52 PM · MITK (v2022.10)
floca triaged T29308: [Segmentation] Check/revise check list of the fill tool and the erase tool as High priority.
Wed, Sep 21, 12:52 PM · MITK (v2022.10)
floca triaged T29307: [Segmentation] Add a fill tool like e.g. GIMP or Photoshop has as Normal priority.
Wed, Sep 21, 12:50 PM · Next Milestone, Request for Discussion, MITK (v2022.10)
floca triaged T29306: [Segmentation] Provide Close tool (behavior of old Fill tool) as Normal priority.
Wed, Sep 21, 12:49 PM · Request for Discussion, MITK (v2022.10)
floca removed a project from T29132: [MultiLabel Segmentation] Define desired behavior of fill / erase tool: Request for Discussion.

Discussion results:

Wed, Sep 21, 12:44 PM · MITK (v2022.10)
floca added a comment to T29078: [Segmentation] Erase tool has unclear edge cases.

We discussed on it.

Wed, Sep 21, 12:38 PM · Next Milestone, Checklist
floca edited projects for T29078: [Segmentation] Erase tool has unclear edge cases, added: Next Milestone; removed MITK (v2022.10), Request for Discussion.
Wed, Sep 21, 11:45 AM · Next Milestone, Checklist
k688h committed rKAAPANAb8850452ba74: Make pre-deployment checks such as kubeconfig, user group etc. (authored by k688h).
Make pre-deployment checks such as kubeconfig, user group etc.
Wed, Sep 21, 11:44 AM
floca closed T28886: MITK Flowbench - Reopen created segmentation not working as Invalid.

To make our live a bit easier. I would say it is a data problem ;).

Wed, Sep 21, 9:36 AM · MITK (v2022.10), Missing Info, Kaapana (internal)
gaoh added a comment to T28886: MITK Flowbench - Reopen created segmentation not working.

oh so I forgot to send it: But this is, what my browser had cashed: "Yes, so I recently tested it, with the current release."
But also, if I remember correctly, this was due to the Phantom dataset we have as the default dataset:
I removed a few slices at the end, and now it is working.

Wed, Sep 21, 9:28 AM · MITK (v2022.10), Missing Info, Kaapana (internal)
floca added a comment to T28886: MITK Flowbench - Reopen created segmentation not working.

@gaoh Ping

Wed, Sep 21, 9:07 AM · MITK (v2022.10), Missing Info, Kaapana (internal)
floca added a comment to T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable.

@s349i Are those checked now? If not please do this ASAP and verify. Thanks.

Wed, Sep 21, 8:57 AM · MITK (v2022.10), Checklist

Tue, Sep 20

u851l committed rKAAPANA79941c9e3770: nnunet-getmodels: fix parsing task_ids (authored by u851l).
nnunet-getmodels: fix parsing task_ids
Tue, Sep 20, 6:12 PM
u851l committed rKAAPANAc635e9f61b00: kube-helm: fix helm-delete-chart responses (authored by u851l).
kube-helm: fix helm-delete-chart responses
Tue, Sep 20, 6:12 PM
j762e added a comment to T28851: [SEG] Add ITK GrowCut as segmentation tool.

Some further remarks as I am leaving DKFZ:

Tue, Sep 20, 3:33 PM · MITK (v2022.10)