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schererj committed rKAAPANA0a5bf1c22320: Merge branch 'feature/nifti-merge' into develop (authored by schererj).
Merge branch 'feature/nifti-merge' into develop
Fri, Mar 5, 3:48 PM
schererj committed rKAAPANAcb458885ff01: merges develop branch (authored by schererj).
merges develop branch
Fri, Mar 5, 3:48 PM
schererj committed rKAAPANA833204b9d7e7: DCMQI single-label-fix and included a check for 'slash' in filenames (authored by schererj).
DCMQI single-label-fix and included a check for 'slash' in filenames
Fri, Mar 5, 3:48 PM
kleina accepted rOBSHYPPOPY75cdf9ddd63f: Fixed T28333.

The auto wrapping functionality for MPISolverWrapper looks correct and straightforward to me. A check for function type is already included in the HyppopySolver.

Fri, Mar 5, 1:41 PM
kleina added a comment to rOBSHYPPOPYba147fa770ad: Add possibility to pass comm to MPI classes..

I agree. As we already said, we have to work on the mpiplayground anyways and convert it into a propper mpi_example. I will spawn a task for that and include your suggestion there.

Fri, Mar 5, 1:36 PM

Yesterday

p212r added a member for Kaapana (internal): m813r.
Thu, Mar 4, 5:36 PM
k656s committed rKAAPANA19e0411e6ccc: bug fix env variables in KaaapanaBaseOperator (authored by k656s).
bug fix env variables in KaaapanaBaseOperator
Thu, Mar 4, 4:33 PM
k656s committed rKAAPANA3e007accf540: Merge branch 'feature/airflow-mounts' into develop (authored by k656s).
Merge branch 'feature/airflow-mounts' into develop
Thu, Mar 4, 12:03 PM
k656s committed rKAAPANAe7bff6aa3179: minor changes in base operator (authored by k656s).
minor changes in base operator
Thu, Mar 4, 12:03 PM
k656s committed rKAAPANAc8c52c4d1e6e: dir naming (authored by m564f).
dir naming
Thu, Mar 4, 11:18 AM
k656s committed rKAAPANAc32ada45ea72: ingress fix (authored by m564f).
ingress fix
Thu, Mar 4, 11:18 AM
k656s committed rKAAPANA665aa7a267ee: removed unnecessary data mount (authored by m564f).
removed unnecessary data mount
Thu, Mar 4, 11:18 AM
k656s committed rKAAPANAbfdf683c6ca2: added possibility to overwrite run_dir (authored by m564f).
added possibility to overwrite run_dir
Thu, Mar 4, 11:18 AM
k656s committed rKAAPANA1890ecbb61e8: mounting, run_dir, env remake / cleanup (authored by m564f).
mounting, run_dir, env remake / cleanup
Thu, Mar 4, 11:18 AM
k656s committed rKAAPANA178e6c984566: added models dir mounting (authored by m564f).
added models dir mounting
Thu, Mar 4, 11:18 AM
k656s committed rKAAPANA86c17e107122: models mount path updated (authored by m564f).
models mount path updated
Thu, Mar 4, 11:18 AM
k656s committed rKAAPANA5b335404ccf1: added MODELSDIR as env (authored by m564f).
added MODELSDIR as env
Thu, Mar 4, 11:18 AM
k656s committed rKAAPANA4f12f46aeaa4: flow webserver data model mounting (authored by m564f).
flow webserver data model mounting
Thu, Mar 4, 11:18 AM
k656s committed rKAAPANA872b63e6429b: updated models mount path (authored by m564f).
updated models mount path
Thu, Mar 4, 11:18 AM
schererj committed rKAAPANA5dd4708e5fc0: nnunet ensemble improvements (authored by schererj).
nnunet ensemble improvements
Thu, Mar 4, 10:47 AM
k656s committed rKAAPANAaa12e203d6ac: added a starter platform to get started with a new platform (authored by k656s).
added a starter platform to get started with a new platform
Thu, Mar 4, 10:37 AM
gaoh moved T27968: CTP gets stuck on large import from Discussion to In Progress on the Kaapana (internal) board.
Thu, Mar 4, 9:35 AM · Kaapana (internal)
gaoh added a member for Kaapana (internal): d587s.
Thu, Mar 4, 9:11 AM
m564f committed rKAAPANA57534d239381: dir naming (authored by m564f).
dir naming
Thu, Mar 4, 8:59 AM

Wed, Mar 3

m564f committed rKAAPANAe5a2cf5a036f: ingress fix (authored by m564f).
ingress fix
Wed, Mar 3, 8:27 PM
eisenman added a comment to T28346: Package version mismatch during upgrade.

In this case we solved it by upgrading BiocManager. Probably the previous version did not know about the later version of "graph".

Wed, Mar 3, 8:17 PM · challengeR
wiesenfa added a comment to T28346: Package version mismatch during upgrade.

graph had only been used for networks, I guess version 1.62 is sufficient

Wed, Mar 3, 7:45 PM · challengeR
schererj committed rKAAPANA7042bcc3cf41: merged dev (authored by schererj).
merged dev
Wed, Mar 3, 4:18 PM
schererj committed rKAAPANAc80e4d6010b6: raised mem limit for dcm2nrrd converter (authored by schererj).
raised mem limit for dcm2nrrd converter
Wed, Mar 3, 4:18 PM
schererj committed rKAAPANA58353d78c566: merged develop (authored by schererj).
merged develop
Wed, Mar 3, 4:18 PM
eisenman added a comment to T28346: Package version mismatch during upgrade.

The package "graph" was moved from CRAN to Bioconductor:
https://cran.r-project.org/web/packages/graph/index.html

Wed, Mar 3, 2:10 PM · challengeR
eisenman triaged T28346: Package version mismatch during upgrade as High priority.
Wed, Mar 3, 2:06 PM · challengeR
k656s committed rKAAPANA36a73657820e: Merge branch 'feature/T28157-standardized-api-for-dags' into develop (authored by k656s).
Merge branch 'feature/T28157-standardized-api-for-dags' into develop
Wed, Mar 3, 1:41 PM
k656s committed rKAAPANA003b01d853cf: finished api call (authored by k656s).
finished api call
Wed, Mar 3, 1:40 PM
k656s committed rKAAPANA767a8d4f1717: first proposal (authored by k656s).
first proposal
Wed, Mar 3, 1:40 PM
kalali edited projects for T26485: PACS mode is active while segmentation is drawn, added: Request for Discussion, Next Milestone; removed Restricted Project.

Also when changing the interaction mode (PACS <-> MITK) while the segmentation tool (e.g. Add) is active, the changed interaction mode will overwrite the segmentation interaction and the render window changes again while drawing the segmentation.

Wed, Mar 3, 11:53 AM · Next Milestone, Request for Discussion, MITK

Tue, Mar 2

kislinsk closed T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..) as Resolved.
Tue, Mar 2, 11:12 PM · MITK
kislinsk committed rMITKbc70fcca1f66: Make use of GetRenderWindowPart() more robust (authored by kislinsk).
Make use of GetRenderWindowPart() more robust
Tue, Mar 2, 11:12 PM
kislinsk committed rMITK288ecbcf8528: Make use of GetRenderWindowPart() more robust (authored by kislinsk).
Make use of GetRenderWindowPart() more robust
Tue, Mar 2, 11:12 PM
kislinsk lowered the priority of T27196: Rewrite packaging of MITK from High to Normal.
Tue, Mar 2, 11:10 AM · MITK, Next Milestone, Cleared
kislinsk closed T23249: Ensure openSSL availability for MITK installers using XNAT plugin or other REST services, a subtask of T27196: Rewrite packaging of MITK, as Resolved.
Tue, Mar 2, 11:10 AM · MITK, Next Milestone, Cleared
kislinsk closed T23249: Ensure openSSL availability for MITK installers using XNAT plugin or other REST services, a subtask of T23301: XNAT improvements, as Resolved.
Tue, Mar 2, 11:10 AM · Auto-closed, MITK
kislinsk closed T23249: Ensure openSSL availability for MITK installers using XNAT plugin or other REST services as Resolved.
Tue, Mar 2, 11:10 AM · Restricted Project, CSI-HD, MITK
kislinsk added a revision to T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..): Unknown Object (Differential Revision).
Tue, Mar 2, 10:57 AM · MITK
thomass added a comment to T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).

Since you also mentioned different editora: Not sure if this is also related but one of the terminal outputs of the testers was:

Tue, Mar 2, 9:51 AM · MITK
schererj committed rKAAPANA76cbf184425e: adjusted CTP workflow to Aiflow DICOM send (authored by schererj).
adjusted CTP workflow to Aiflow DICOM send
Tue, Mar 2, 9:41 AM
kalali committed rMITK7014777eedae: Preserve color selection (authored by kalali).
Preserve color selection
Tue, Mar 2, 9:11 AM
kalali committed rMITK372746b5a2ae: Initialize color member with red (authored by kalali).
Initialize color member with red
Tue, Mar 2, 9:11 AM
kalali committed rMITK93758e9b6fe4: Correctly initialize the color selection dialog (authored by kalali).
Correctly initialize the color selection dialog
Tue, Mar 2, 9:11 AM
kislinsk added a comment to T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).

I will go through the source tree and as a rule of thumb I will just add nullptr checks if the render window part is only used for rendering updates and add the OPEN strategy if more is done with the reference and there is not already a nullptr check.

Tue, Mar 2, 8:49 AM · MITK
kislinsk claimed T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).
Tue, Mar 2, 8:45 AM · MITK

Mon, Mar 1

kislinsk renamed T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..) from [Docu] Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..) to Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).
Mon, Mar 1, 8:57 PM · MITK
kislinsk added a comment to T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).

I tested it in debug mode and the fix is pretty simple. The crashes occurs in lines like GetRenderWindowPart()->RequestUpdate() when GetRenderWindowPart() returns a nullptr. I guess there are quite a few unchecked lines like this in MITK.

Mon, Mar 1, 8:57 PM · MITK
thomass updated the task description for T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).
Mon, Mar 1, 5:38 PM · MITK
p212r added a member for MIC: m813r.
Mon, Mar 1, 5:04 PM
schererj committed rKAAPANAc39f4c7f8fec: training adjustments (authored by schererj).
training adjustments
Mon, Mar 1, 4:23 PM
schererj committed rKAAPANAebc41d34ed5d: create dataset rework (authored by schererj).
create dataset rework
Mon, Mar 1, 4:23 PM
schererj committed rKAAPANAca8e9ce1cc1e: Merge remote-tracking branch 'origin/develop' into feature/nifti-merge (authored by schererj).
Merge remote-tracking branch 'origin/develop' into feature/nifti-merge
Mon, Mar 1, 4:23 PM
s434n added a comment to T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).

I got the same result as kislinsk, the crash only occurs when the documentation is open and not in the background

Mon, Mar 1, 4:07 PM · MITK
kislinsk added a comment to T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).

When I reproduced the issue with MatchPoint, it didn't happen when the documentation was in the background (i.e. the documentation is not the active editor). I guess this is a good starting point for debugging.

Mon, Mar 1, 3:16 PM · MITK
thomass added a comment to T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).

With the modelfit inspector it most often crashed, if the user clicked on a datanode in the datastorage

Mon, Mar 1, 3:07 PM · MITK
thomass updated the task description for T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).
Mon, Mar 1, 3:02 PM · MITK
thomass renamed T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..) from [Docu] Crashes when using plugin with documentation opened to [Docu] Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).
Mon, Mar 1, 2:49 PM · MITK
thomass triaged T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..) as High priority.
Mon, Mar 1, 2:48 PM · MITK
gaoh committed rKAAPANAe9a52401d4c3: T27968 added -XX:+ExitOnOutOfMemoryError -XX:+CrashOnOutOfMemoryError results… (authored by gaoh).
T27968 added -XX:+ExitOnOutOfMemoryError -XX:+CrashOnOutOfMemoryError results…
Mon, Mar 1, 11:42 AM
gaoh committed rKAAPANAbfeeabbf1d0a: Merge branch 'develop' of https://phabricator.mitk.org/source/kaapana into… (authored by gaoh).
Merge branch 'develop' of https://phabricator.mitk.org/source/kaapana into…
Mon, Mar 1, 11:42 AM
gaoh committed rKAAPANA4a10c21da12f: T28286 check if data exist for each step, before rejecting/deleting (authored by gaoh).
T28286 check if data exist for each step, before rejecting/deleting
Mon, Mar 1, 11:19 AM
holzwart added a member for Photoacoustics: p253n.
Mon, Mar 1, 10:58 AM
holzwart added a member for CAMI: p253n.
Mon, Mar 1, 10:57 AM
kislinsk edited the content of Code Guarantees.
Mon, Mar 1, 10:39 AM
kislinsk edited the content of Code Guarantees.
Mon, Mar 1, 10:29 AM
kislinsk renamed Code Guarantees from Code guarantees to Code Guarantees.
Mon, Mar 1, 10:19 AM
kislinsk published a new version of Git Branching Model.
Mon, Mar 1, 9:43 AM · MITK
k688h added a comment to rKAAPANAf41b4e0c7d20: Merge branch 'master' into feature/update_development_guide_docu.

@k656s Why is a LocalDiceOperator part of a documentation update? 😉

Mon, Mar 1, 9:19 AM

Sun, Feb 28

schererj committed rKAAPANA55790324dd21: fixed seg_info if segmentation for label was not found (authored by schererj).
fixed seg_info if segmentation for label was not found
Sun, Feb 28, 12:58 PM
schererj committed rKAAPANA2dd3d66b6966: LocalDiceOperator adjustments (authored by schererj).
LocalDiceOperator adjustments
Sun, Feb 28, 12:58 PM
schererj committed rKAAPANA92aaf80bbb06: nnunet simple_predict batch-level skip if processed-counter > 0 (authored by schererj).
nnunet simple_predict batch-level skip if processed-counter > 0
Sun, Feb 28, 12:58 PM
schererj committed rKAAPANA312ef4a1e0ff: ensemble improvements (authored by schererj).
ensemble improvements
Sun, Feb 28, 12:58 PM
alexandersutton updated alexandersutton.
Sun, Feb 28, 7:52 AM

Sat, Feb 27

m564f committed rKAAPANAb01fec13a72f: removed unnecessary data mount (authored by m564f).
removed unnecessary data mount
Sat, Feb 27, 5:17 PM
m564f committed rKAAPANAfe2cabd796e9: mounting, run_dir, env remake / cleanup (authored by m564f).
mounting, run_dir, env remake / cleanup
Sat, Feb 27, 5:17 PM

Fri, Feb 26

floca updated subscribers of rKAAPANAf41b4e0c7d20: Merge branch 'master' into feature/update_development_guide_docu.

@k656s Why is a LocalDiceOperator part of a documentation update? 😉

Fri, Feb 26, 10:25 PM
k688h committed rKAAPANAf41b4e0c7d20: Merge branch 'master' into feature/update_development_guide_docu (authored by k688h).
Merge branch 'master' into feature/update_development_guide_docu
Fri, Feb 26, 8:58 PM
k688h committed rKAAPANA095097a66d0d: Suggest downlaoding DICOM image from Online Archive in Development Guide… (authored by k688h).
Suggest downlaoding DICOM image from Online Archive in Development Guide…
Fri, Feb 26, 8:32 PM
k656s committed rKAAPANA5f85621617c6: first proposal (authored by k656s).
first proposal
Fri, Feb 26, 7:16 PM
schererj committed rKAAPANAa3b176b22a8a: added curl to the Ubuntu dependencies in the getting-started guide (authored by schererj).
added curl to the Ubuntu dependencies in the getting-started guide
Fri, Feb 26, 4:52 PM
schererj committed rKAAPANA8b3a61ac3e6c: added curl to the ubuntu dependencies in the getting-started guide (authored by schererj).
added curl to the ubuntu dependencies in the getting-started guide
Fri, Feb 26, 4:52 PM
m564f committed rKAAPANA62abb86d0900: added possibility to overwrite run_dir (authored by m564f).
added possibility to overwrite run_dir
Fri, Feb 26, 4:17 PM
m564f committed rKAAPANA5191b0934369: added models dir mounting (authored by m564f).
added models dir mounting
Fri, Feb 26, 4:17 PM
m564f committed rKAAPANAd15fcb929140: added MODELSDIR as env (authored by m564f).
added MODELSDIR as env
Fri, Feb 26, 4:17 PM
m564f committed rKAAPANAd1469e14fb59: models mount path updated (authored by m564f).
models mount path updated
Fri, Feb 26, 4:17 PM
m564f committed rKAAPANA7155d889c308: flow webserver data model mounting (authored by m564f).
flow webserver data model mounting
Fri, Feb 26, 4:17 PM
m564f committed rKAAPANA692619dbfa4e: updated models mount path (authored by m564f).
updated models mount path
Fri, Feb 26, 4:17 PM
floca committed rOBSHYPPOPY7e2b0026d800: Extracted mpi4py into an optional_requirements.txt for now, (authored by floca).
Extracted mpi4py into an optional_requirements.txt for now,
Fri, Feb 26, 2:38 PM
floca committed rOBSHYPPOPY8fcdb9d07f73: Made MPI an extra in the requirement specification because (authored by floca).
Made MPI an extra in the requirement specification because
Fri, Feb 26, 12:27 PM
floca committed rOBSHYPPOPY3636699c3c1e: Removed unneeded dependency to MPIBlackboxFunction (authored by floca).
Removed unneeded dependency to MPIBlackboxFunction
Fri, Feb 26, 12:27 PM

Thu, Feb 25

schererj committed rKAAPANA426f548b1746: first ensemble workflow (authored by schererj).
first ensemble workflow
Thu, Feb 25, 6:42 PM
schererj committed rKAAPANA6f9b4c371f73: Merge branch 'develop' into feature/nifti-merge (authored by schererj).
Merge branch 'develop' into feature/nifti-merge
Thu, Feb 25, 6:42 PM
k656s committed rKAAPANA2697802a61d7: version up of kube-helm-chart (authored by k656s).
version up of kube-helm-chart
Thu, Feb 25, 6:19 PM
k656s committed rKAAPANA7da0f398ed08: created kaapana-minimal-core (authored by k656s).
created kaapana-minimal-core
Thu, Feb 25, 6:19 PM