Page MenuHomePhabricator
Feed All Stories

Yesterday

k688h committed rKAAPANAd0bef5a44d28: Merge branch 'feature/T27880-set-fixed-container-req-versions' into develop (authored by k688h).
Merge branch 'feature/T27880-set-fixed-container-req-versions' into develop
Mon, Sep 27, 2:29 PM
k688h committed rKAAPANAee5baca7c27b: Set requirements for dice-eval, mitk-fileconv, mitk-resample containers (authored by k688h).
Set requirements for dice-eval, mitk-fileconv, mitk-resample containers
Mon, Sep 27, 2:27 PM
k688h committed rKAAPANAc2f872a08554: Fix kube-helm requirement version (authored by k688h).
Fix kube-helm requirement version
Mon, Sep 27, 2:27 PM
k688h committed rKAAPANA115ab84a4f2a: Set fixed requirements for processing and meta-init containers (authored by k688h).
Set fixed requirements for processing and meta-init containers
Mon, Sep 27, 2:27 PM
k688h committed rKAAPANA906ee78f88be: Fix code-server container requirements (authored by k688h).
Fix code-server container requirements
Mon, Sep 27, 2:27 PM
k688h committed rKAAPANA1f9c4bdd3d7e: Set requirements for dice-eval, mitk-fileconv, mitk-resample containers (authored by k688h).
Set requirements for dice-eval, mitk-fileconv, mitk-resample containers
Mon, Sep 27, 2:07 PM
k688h committed rKAAPANA5759612e5fd0: Set fixed requirements for processing and meta-init containers (authored by k688h).
Set fixed requirements for processing and meta-init containers
Mon, Sep 27, 2:07 PM
k688h committed rKAAPANAca2a53e5d314: Fix kube-helm requirement version (authored by k688h).
Fix kube-helm requirement version
Mon, Sep 27, 2:07 PM
k688h committed rKAAPANA3e03c2b3b2df: Fix code-server container requirements (authored by k688h).
Fix code-server container requirements
Mon, Sep 27, 2:07 PM
k688h committed rKAAPANA1113cfc643b4: Set requirements for dice-eval, mitk-fileconv, mitk-resample containers (authored by k688h).
Set requirements for dice-eval, mitk-fileconv, mitk-resample containers
Mon, Sep 27, 11:04 AM
k688h committed rKAAPANA25a1450a9d5e: Set fixed requirements for processing and meta-init containers (authored by k688h).
Set fixed requirements for processing and meta-init containers
Mon, Sep 27, 11:04 AM
k688h committed rKAAPANAb98c7637df82: Fix kube-helm requirement version (authored by k688h).
Fix kube-helm requirement version
Mon, Sep 27, 11:04 AM
k688h committed rKAAPANA8d7dd653dfab: Fix code-server container requirements (authored by k688h).
Fix code-server container requirements
Mon, Sep 27, 11:04 AM

Fri, Sep 24

k688h committed rKAAPANAcda48e55328a: Set requirements for dice-eval, mitk-fileconv, mitk-resample containers (authored by k688h).
Set requirements for dice-eval, mitk-fileconv, mitk-resample containers
Fri, Sep 24, 4:09 PM
k688h committed rKAAPANA6242b4c816aa: Set fixed requirements for processing and meta-init containers (authored by k688h).
Set fixed requirements for processing and meta-init containers
Fri, Sep 24, 3:51 PM
patmjen added a comment to T28706: Cannot build module DataTypesExt becasue lz4 is not linked by CMake.

I tried adding lib64 as you suggested, but it sadly did not fix the issue. The error looks to be the same: liblz4.so is not added during linking.
Here's the output from what you suggested in your first comment:

CMake Error at CMake/PackageDepends/MITK_lz4_Config.cmake:3 (message):
  include dirs: /work1/patmjen/MITK/MITK-superbuild-test/ep/include
  libraries:
  optimized;/work1/patmjen/MITK/MITK-superbuild-test/ep/lib64/liblz4.so
Call Stack (most recent call first):
  CMake/mitkFunctionUseModules.cmake:52 (include)
  CMake/mitkFunctionUseModules.cmake:133 (_include_package_config)
  CMake/mitkFunctionCreateModule.cmake:605 (mitk_use_modules)
  Modules/DataTypesExt/CMakeLists.txt:1 (mitk_create_module)

Just in case, I am at commit 895486021524908ada2cd5c5978120d66678ec45 (HEAD -> develop, origin/develop, origin/HEAD).
Here's a full git diff:

diff --git a/CMake/Findlz4.cmake b/CMake/Findlz4.cmake
index a79f05ade4..e9c68dccc4 100644
--- a/CMake/Findlz4.cmake
+++ b/CMake/Findlz4.cmake
@@ -8,14 +8,14 @@ mark_as_advanced(lz4_INCLUDE_DIR)
Fri, Sep 24, 3:14 PM · MITK (v2021.10)
schererj committed rKAAPANAb7ca25d28c9e: reversed DAGs running limit for CTP to 150 (authored by schererj).
reversed DAGs running limit for CTP to 150
Fri, Sep 24, 2:48 PM
schererj committed rKAAPANA0a01f3946f8a: nnunet overlap bugfix (authored by schererj).
nnunet overlap bugfix
Fri, Sep 24, 1:13 PM
schererj committed rKAAPANAcfe8e759565c: Merge branch 'feature/jonas-bug-fixes' into develop (authored by schererj).
Merge branch 'feature/jonas-bug-fixes' into develop
Fri, Sep 24, 12:08 PM
schererj committed rKAAPANA8a7c85cb60ee: prometheus ram limit-increase (authored by schererj).
prometheus ram limit-increase
Fri, Sep 24, 12:08 PM
schererj committed rKAAPANAd16d4fa3ea7c: CTP adjustments (authored by schererj).
CTP adjustments
Fri, Sep 24, 12:08 PM
schererj committed rKAAPANA1b9da87d0aa1: set incoming_dicom DAG to 20 max_active_runs (authored by schererj).
set incoming_dicom DAG to 20 max_active_runs
Fri, Sep 24, 12:08 PM
k688h committed rKAAPANAd22ebfaaa56a: Fix kube-helm requirement version (authored by k688h).
Fix kube-helm requirement version
Fri, Sep 24, 10:55 AM
kislinsk updated subscribers of T28706: Cannot build module DataTypesExt becasue lz4 is not linked by CMake.
Fri, Sep 24, 9:31 AM · MITK (v2021.10)
kislinsk added a comment to T28706: Cannot build module DataTypesExt becasue lz4 is not linked by CMake.

Oh, I think I might have found the issue. Ignore the comment above and in CMake/Findlz4.cmake please add lib64 to the PATH_SUFFIXES of the two calls to find_library() in lines 11 and 18 like PATH_SUFFIXES lib lib64. Does it work?

Fri, Sep 24, 9:30 AM · MITK (v2021.10)
kislinsk claimed T28706: Cannot build module DataTypesExt becasue lz4 is not linked by CMake.
Fri, Sep 24, 9:25 AM · MITK (v2021.10)
kislinsk triaged T28706: Cannot build module DataTypesExt becasue lz4 is not linked by CMake as High priority.

Thanks for the comprehensive report. Can you do me a favor and add message(FATAL_ERROR "include dirs: ${lz4_INCLUDE_DIR} libraries: ${lz4_LIBRARIES}") as last line to CMake/PackageDepends/MITK_lz4_Config.cmake and configure MITK (not superbuild) to get the output?

Fri, Sep 24, 9:25 AM · MITK (v2021.10)
k656s committed rKAAPANA2752be4bfd67: added generic installer script, added tarball to build installer scripts (authored by k656s).
added generic installer script, added tarball to build installer scripts
Fri, Sep 24, 9:19 AM

Thu, Sep 23

kalali closed T24358: Rework QmitkMouseModeSwitcher, a subtask of T24356: Rework mouse mode switcher, as Resolved.
Thu, Sep 23, 10:01 PM · MITK
kalali closed T24358: Rework QmitkMouseModeSwitcher as Resolved.
Thu, Sep 23, 10:01 PM · MITK
kalali committed rMITK9fc6d9258f4e: Clean usage of QmitkInteractionSchemeToolBar and InteractionSchemeSwitcher (authored by kalali).
Clean usage of QmitkInteractionSchemeToolBar and InteractionSchemeSwitcher
Thu, Sep 23, 9:58 PM
kalali committed rMITK99775c5afe86: Remove member variable and create new variable on demand (authored by kalali).
Remove member variable and create new variable on demand
Thu, Sep 23, 9:58 PM
kalali committed rMITKa4b63edd857b: Do not set the interaction scheme (authored by kalali).
Do not set the interaction scheme
Thu, Sep 23, 9:58 PM
kalali committed rMITK556fc11aef9c: Do not explicitly set the visibility of the tool bar (authored by kalali).
Do not explicitly set the visibility of the tool bar
Thu, Sep 23, 9:58 PM
kalali committed rMITK8e756e71766c: Remove unnecessary function, member and header (authored by kalali).
Remove unnecessary function, member and header
Thu, Sep 23, 9:58 PM
patmjen created T28706: Cannot build module DataTypesExt becasue lz4 is not linked by CMake.
Thu, Sep 23, 3:45 PM · MITK (v2021.10)
kalali awarded T26485: [Segmentation] PACS mode is active while segmentation is drawn a Party Time token.
Thu, Sep 23, 2:39 PM · MITK (v2021.10)
s434n closed T26485: [Segmentation] PACS mode is active while segmentation is drawn as Resolved.

With both subtasks done, we have successfully implemented the main goal of this task. The remaining bug that deactivating a segmentation tool resets the interaction to an earlier state (the one at which the tool was activated) has been split off into T28630 because it is not critical and can be easily handled with the new feature of deactivating PACS tools.

Thu, Sep 23, 11:51 AM · MITK (v2021.10)
s434n committed rMITKe7f6648cd685: Correct handling of PACS mode when using ImageCropper (authored by s434n).
Correct handling of PACS mode when using ImageCropper
Thu, Sep 23, 10:56 AM
s434n closed T28629: [ImageCropper] PACS mode is active while bounding box is drawn as Resolved by committing rMITKe7f6648cd685: Correct handling of PACS mode when using ImageCropper.
Thu, Sep 23, 10:56 AM · MITK (v2021.10)
s434n committed rMITK6974be056a90: remove unused print statements (authored by s434n).
remove unused print statements
Thu, Sep 23, 10:56 AM
s434n committed rMITK216b2b1041da: generalize disabling/enabling crosshair to PACS scheme (authored by s434n).
generalize disabling/enabling crosshair to PACS scheme
Thu, Sep 23, 10:56 AM
s434n committed rMITK090557c6d3d6: handle DisplayActionEventBroadcasts in disabling/enabling of crosshair (authored by s434n).
handle DisplayActionEventBroadcasts in disabling/enabling of crosshair
Thu, Sep 23, 10:56 AM

Mon, Sep 20

schererj committed rKAAPANA82ee5e4eedf9: integration done (authored by schererj).
integration done
Mon, Sep 20, 5:00 PM

Sun, Sep 19

kalali added a revision to T24358: Rework QmitkMouseModeSwitcher: Unknown Object (Differential Revision).
Sun, Sep 19, 6:29 PM · MITK
kalali reassigned T24368: Interaction scheme has different level of interaction from kalali to s434n.
Sun, Sep 19, 6:26 PM · MITK
kalali added a comment to T24368: Interaction scheme has different level of interaction.

We discussed this and came to the conclusion to abandon D535.
@s434n will take over and create split MITK config files to be consistent with the PACS config file style.
Generally, as mentioned in the previous comment, splitting the config files "into smaller chunks" [...] "allows to change only the aspects of interaction that are necessary".

Sun, Sep 19, 6:26 PM · MITK

Fri, Sep 17

kalali committed rMITK895486021524: Cherry-picked old changes: Remove-QmitkMouseModeSwitcher (authored by kalali).
Cherry-picked old changes: Remove-QmitkMouseModeSwitcher
Fri, Sep 17, 4:03 PM
kalali committed rMITK181d3c4e3fab: Fix wrong slot definition; use new connect-syntax (authored by kalali).
Fix wrong slot definition; use new connect-syntax
Fri, Sep 17, 4:03 PM
kalali committed rMITK4b84f9c383c9: Remove files (authored by kalali).
Remove files
Fri, Sep 17, 4:03 PM
kalali committed rMITK0e9839351823: Modify replacing QmitkInteractionSchemeToolBar (authored by kalali).
Modify replacing QmitkInteractionSchemeToolBar
Fri, Sep 17, 4:03 PM
k656s committed rKAAPANAe248188344a8: resolved some more conflicts (authored by k656s).
resolved some more conflicts
Fri, Sep 17, 12:16 PM
k656s committed rKAAPANA60e46147e292: Airflow App is integrated in Kaapana. But there are some things to do: (authored by m139l).
Airflow App is integrated in Kaapana. But there are some things to do:
Fri, Sep 17, 12:16 PM
k656s committed rKAAPANAf971297ff312: removed kaapana-jobs app (authored by k656s).
removed kaapana-jobs app
Fri, Sep 17, 12:16 PM
k656s committed rKAAPANA0e9e24719af1: Edited Kaapana API so the method 'getdagruns' return also the ID of the failed… (authored by m139l).
Edited Kaapana API so the method 'getdagruns' return also the ID of the failed…
Fri, Sep 17, 12:16 PM
k656s committed rKAAPANAe798fdf932fa: resolved some more conflicts (authored by k656s).
resolved some more conflicts
Fri, Sep 17, 12:16 PM
k656s committed rKAAPANA09756269216c: design choices (authored by k656s).
design choices
Fri, Sep 17, 12:16 PM
k656s committed rKAAPANAd84b2755b344: resolved some more conflicts (authored by k656s).
resolved some more conflicts
Fri, Sep 17, 12:16 PM
k656s committed rKAAPANAa0ea2944a7ab: removed kaapana-jobs app (authored by k656s).
removed kaapana-jobs app
Fri, Sep 17, 12:16 PM
k656s committed rKAAPANAaf9754488034: Airflow App is integrated in Kaapana. But there are some things to do: (authored by m139l).
Airflow App is integrated in Kaapana. But there are some things to do:
Fri, Sep 17, 12:16 PM
k656s committed rKAAPANAc1eae450922b: Quick fix for annimation. It could be improved (when you clear more than one… (authored by m139l).
Quick fix for annimation. It could be improved (when you clear more than one…
Fri, Sep 17, 12:16 PM
k656s committed rKAAPANAe1dba5beef2d: Finished version ready for implementation in Kaapana. I cleared the artefacts… (authored by m139l).
Finished version ready for implementation in Kaapana. I cleared the artefacts…
Fri, Sep 17, 12:16 PM
k656s committed rKAAPANA1ea6ae9979c2: Edited Kaapana API so the method 'getdagruns' return also the ID of the failed… (authored by m139l).
Edited Kaapana API so the method 'getdagruns' return also the ID of the failed…
Fri, Sep 17, 12:16 PM
k656s committed rKAAPANA7e06b676e2db: Edited Kaapana API so the method 'getdagruns' return also the ID of the failed… (authored by m139l).
Edited Kaapana API so the method 'getdagruns' return also the ID of the failed…
Fri, Sep 17, 12:16 PM
k656s committed rKAAPANAddc94c38ffcf: First steps with app. (authored by m139l).
First steps with app.
Fri, Sep 17, 12:16 PM
schererj committed rKAAPANA76f3b0f311f4: added DICOM SR support (authored by schererj).
added DICOM SR support
Fri, Sep 17, 12:07 PM
schererj committed rKAAPANA54e21a651d69: init (authored by schererj).
init
Fri, Sep 17, 12:07 PM
schererj committed rKAAPANA89261aee2b9c: added DICOM SR support (authored by schererj).
added DICOM SR support
Fri, Sep 17, 12:07 PM
schererj committed rKAAPANAb23e9a8af28d: init (authored by schererj).
init
Fri, Sep 17, 12:07 PM
kislinsk merged T28489: int64 not supported into T28557: Cannot load segmentations from KITS challenge due to unknown pixel type.
Fri, Sep 17, 11:13 AM · Request for Discussion, MITK (v2021.10)
kislinsk merged task T28489: int64 not supported into T28557: Cannot load segmentations from KITS challenge due to unknown pixel type.
Fri, Sep 17, 11:13 AM · MITK
k688h committed rKAAPANA2fe1293adf7e: Change log level for CI_IGNORE containers to DEBUG (authored by k688h).
Change log level for CI_IGNORE containers to DEBUG
Fri, Sep 17, 10:52 AM

Thu, Sep 16

k656s committed rKAAPANA304fb826cf4a: Added racoon-dashboard to landing page and racoon page (authored by k656s).
Added racoon-dashboard to landing page and racoon page
Thu, Sep 16, 6:07 PM
k656s committed rKAAPANA21e958caa114: changed single_execution default to True for UKF workflow (authored by schererj).
changed single_execution default to True for UKF workflow
Thu, Sep 16, 4:09 PM
k656s committed rKAAPANA192638086e69: removed vdev-flag (authored by k656s).
removed vdev-flag
Thu, Sep 16, 4:09 PM
k656s committed rKAAPANA89ecf345ebe2: fixed in importing tar installer script (authored by k656s).
fixed in importing tar installer script
Thu, Sep 16, 4:09 PM
k656s committed rKAAPANA19d70bc3ffd8: minor fix (authored by k656s).
minor fix
Thu, Sep 16, 4:09 PM
k656s committed rKAAPANAa6e206651071: minor fixed in postgresql dicom-init prometheus and integration of tar… (authored by k656s).
minor fixed in postgresql dicom-init prometheus and integration of tar…
Thu, Sep 16, 4:09 PM
k656s committed rKAAPANAa30e2ebb906a: adapted registry version (authored by k656s).
adapted registry version
Thu, Sep 16, 4:09 PM
k656s committed rKAAPANA8c6e1c309007: changed dicom-init port to 8080 (authored by k656s).
changed dicom-init port to 8080
Thu, Sep 16, 4:09 PM
k656s committed rKAAPANA1dd1b71e8368: change back to 11115 (authored by k656s).
change back to 11115
Thu, Sep 16, 4:09 PM
k656s committed rKAAPANAc82e69d1027f: added all racoon relevant code (authored by k656s).
added all racoon relevant code
Thu, Sep 16, 4:09 PM
k656s committed rKAAPANAa38c5a54d6e8: enabled retry on racoon-ukf-presegmentation (authored by schererj).
enabled retry on racoon-ukf-presegmentation
Thu, Sep 16, 4:09 PM
m139l committed rKAAPANAac92ac15b107: Merge branch 'develop' into feature/T27993-airflow-app (authored by m139l).
Merge branch 'develop' into feature/T27993-airflow-app
Thu, Sep 16, 2:52 PM
m139l committed rKAAPANAef9ac3006096: Made same improvements to the commentaries (authored by m139l).
Made same improvements to the commentaries
Thu, Sep 16, 2:52 PM
m139l committed rKAAPANA5be3dd03f19b: resolved some more conflicts (authored by k656s).
resolved some more conflicts
Thu, Sep 16, 2:52 PM
m139l committed rKAAPANAf7050dfe9feb: resolved some more conflicts (authored by k656s).
resolved some more conflicts
Thu, Sep 16, 2:52 PM
m139l committed rKAAPANA18ab0f6f008c: removed kaapana-jobs app (authored by k656s).
removed kaapana-jobs app
Thu, Sep 16, 2:52 PM
m139l committed rKAAPANA09745d02d154: Airflow App is integrated in Kaapana. But there are some things to do: (authored by m139l).
Airflow App is integrated in Kaapana. But there are some things to do:
Thu, Sep 16, 2:52 PM
m139l committed rKAAPANA348f7e7a7a79: Edited Kaapana API so the method 'getdagruns' return also the ID of the failed… (authored by m139l).
Edited Kaapana API so the method 'getdagruns' return also the ID of the failed…
Thu, Sep 16, 2:52 PM
m139l committed rKAAPANAb9d0a142dd5d: training adjustments (authored by schererj).
training adjustments
Thu, Sep 16, 2:52 PM
m139l committed rKAAPANAa26f81070d2c: small adjustments (authored by schererj).
small adjustments
Thu, Sep 16, 2:52 PM
m139l committed rKAAPANA773d68ebb625: Task01 fix (authored by schererj).
Task01 fix
Thu, Sep 16, 2:52 PM
m139l committed rKAAPANA34b2f2060982: schedule on big enough gpus only (authored by schererj).
schedule on big enough gpus only
Thu, Sep 16, 2:52 PM
m139l committed rKAAPANA6d6888686130: formatting (authored by schererj).
formatting
Thu, Sep 16, 2:52 PM
m139l committed rKAAPANA1e2db652ed53: gpu scheduling working (authored by schererj).
gpu scheduling working
Thu, Sep 16, 2:52 PM
m139l committed rKAAPANAa9fc6924c893: removed max_active_runs from nnunet-inference (authored by schererj).
removed max_active_runs from nnunet-inference
Thu, Sep 16, 2:52 PM
m139l committed rKAAPANAb44132e8dec9: ready for testing (authored by schererj).
ready for testing
Thu, Sep 16, 2:52 PM
m139l committed rKAAPANA3ab336484d23: gpu scheduling (authored by schererj).
gpu scheduling
Thu, Sep 16, 2:52 PM
m139l committed rKAAPANA45a3152930aa: added gpu-specific scheduling (authored by schererj).
added gpu-specific scheduling
Thu, Sep 16, 2:52 PM