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eisenman added a comment to T27677: Update text in reports (feedback from Lena).

In section 3.2.1 "Visualizing bootstrap results", two visualization methods are mentioned, but only one is contained in the report: "To investigate which tasks separate algorithms well (i.e., lead to a stable ranking), two visualization methods
are recommended."

Mon, Sep 21, 7:01 PM · challengeR (v1.0)
eisenman claimed T27677: Update text in reports (feedback from Lena).
Mon, Sep 21, 6:58 PM · challengeR (v1.0)
kislinsk renamed Kaapana (internal) from d:cipher to Kaapana (internal).
Mon, Sep 21, 4:31 PM
kislinsk renamed T27030: Packaging does not work with NSIS v3.x from Building mitk installer on windows failed. to Packaging does not work with NSIS v3.x.
Mon, Sep 21, 1:21 PM · Noteworthy, MITK (2020)
neher added a comment to T27718: Miniapp for basic DICOM testing.

Maybe a nice introduction project for a new student.

Mon, Sep 21, 12:07 PM · Kaapana (internal), MITK
kislinsk closed T27030: Packaging does not work with NSIS v3.x, a subtask of T27196: Rewrite packaging of MITK, as Resolved.
Mon, Sep 21, 12:05 PM · Cleared, MITK (2020)
kislinsk closed T27030: Packaging does not work with NSIS v3.x as Resolved.
Mon, Sep 21, 12:05 PM · Noteworthy, MITK (2020)
kislinsk added a comment to T27030: Packaging does not work with NSIS v3.x.

Deleted branch bugfix/T27030-MigrateToNSISv3.

Mon, Sep 21, 12:00 PM · Noteworthy, MITK (2020)
kislinsk committed rMITK93926fb829a2: Merge branch 'bugfix/T27030-MigrateToNSISv3' into develop (authored by kislinsk).
Merge branch 'bugfix/T27030-MigrateToNSISv3' into develop
Mon, Sep 21, 11:59 AM
kislinsk added a comment to T27030: Packaging does not work with NSIS v3.x.

Pushed new branch bugfix/T27030-MigrateToNSISv3.

Mon, Sep 21, 11:58 AM · Noteworthy, MITK (2020)
kislinsk claimed T27030: Packaging does not work with NSIS v3.x.

This happens with NSIS 3.x. We use NSIS 2.x. However, CMake dropped NSIS 2.x support in version 3.17, so we should finally get rid of this error and also require NSIS 3.x.

Mon, Sep 21, 11:55 AM · Noteworthy, MITK (2020)
schererj added a comment to T27718: Miniapp for basic DICOM testing.

This is not planned for the Kaapana release.

Mon, Sep 21, 11:21 AM · Kaapana (internal), MITK
kalali added a revision to T27744: [MITKDoc] Revise Model Fit Demo View Documentation: Unknown Object (Differential Revision).
Mon, Sep 21, 10:54 AM · Cleared, MITK (2020)
eisenman added a comment to T27748: Decide on limit for algorithms in plot legends.

The plots can already be limited to the top x performing algorithms. This can be reused in that case. Then the question is how many legend items are we going to "guarantee" appearing nicely?

Mon, Sep 21, 9:32 AM · challengeR (v1.0)
reinkea added a comment to T27748: Decide on limit for algorithms in plot legends.

One strategy would be to add an optional argument in which the number of displayed teams can be specified. For challenges with 200 participants, even multiple columns might be confusing.

Mon, Sep 21, 9:09 AM · challengeR (v1.0)

Fri, Sep 18

eisenman committed rCHALLENGERcfb5ffa0fa05: Keep cases generic (authored by eisenman).
Keep cases generic
Fri, Sep 18, 7:01 PM
eisenman moved T27677: Update text in reports (feedback from Lena) from Backlog to In Progress on the challengeR (v1.0) board.
Fri, Sep 18, 6:55 PM · challengeR (v1.0)
eisenman moved T27474: Legend of line plot has missing legend title and algorithm from In Progress to Done on the challengeR (v1.0) board.

The 19 algorithms are shown correctly. The strategy for more algorithms is discussed in T27748.

Fri, Sep 18, 6:52 PM · challengeR (v1.0)
eisenman created T27748: Decide on limit for algorithms in plot legends.
Fri, Sep 18, 6:51 PM · challengeR (v1.0)
eisenman moved T27475: Legend of blob plot has missing legend title and algorithms from In Progress to Done on the challengeR (v1.0) board.

The 19 algorithms are shown correctly.

Fri, Sep 18, 6:39 PM · challengeR (v1.0)
eisenman added a comment to T27294: add multiple figure output formats in report with option clean=TRUE.

It works with the vector. The generated jpeg and png files have a quite low resolution and are as such not really reusable (e.g. in a presentation slide). Can you increase the resolution?

Fri, Sep 18, 5:42 PM · challengeR (v1.0)
eisenman moved T27658: LaTeX Warning: There were undefined references from In Progress to Done on the challengeR (v1.0) board.
Fri, Sep 18, 5:14 PM · challengeR (v1.0)
eisenman committed rCHALLENGERbf889b00d8e6: Merge branch 'feature/T27658-FixUndefinedReference' into develop (authored by eisenman).
Merge branch 'feature/T27658-FixUndefinedReference' into develop
Fri, Sep 18, 5:08 PM
eisenman committed rCHALLENGER91d75517df45: Add individual plot description without need of referencing (authored by eisenman).
Add individual plot description without need of referencing
Fri, Sep 18, 5:06 PM
eisenman added a comment to T27658: LaTeX Warning: There were undefined references.

The warning is raised because the label is defined when bootstrapping is used but also referenced when bootstrapping is not used.

Fri, Sep 18, 4:44 PM · challengeR (v1.0)
thomass added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

I think the things you changed are all reasonable, the things I would add (I can not do it atm because I don't have access to the document)

Fri, Sep 18, 2:39 PM · Restricted Project, Cleared, MITK (2020)
eisenman moved T27658: LaTeX Warning: There were undefined references from Backlog to In Progress on the challengeR (v1.0) board.
Fri, Sep 18, 2:29 PM · challengeR (v1.0)
kompan closed T27743: Clean up table of contents of doxygen documentation as Resolved.
Fri, Sep 18, 2:20 PM · Cleared, MITK (2020)
kompan committed rMITKb20efe7f1f95: Clean up table of contents main structure in doxygen documentation. (authored by kompan).
Clean up table of contents main structure in doxygen documentation.
Fri, Sep 18, 2:19 PM
kompan committed rMITK85218a7a2c4b: Rename matchpoint frame correction view page and view id. (authored by kompan).
Rename matchpoint frame correction view page and view id.
Fri, Sep 18, 2:18 PM
kompan committed rMITKc69f60c1d459: Rename matchpoint visualizer view page. (authored by kompan).
Rename matchpoint visualizer view page.
Fri, Sep 18, 2:18 PM
kompan committed rMITKc6a180b62f94: Rename matchpoint algorithm browser view page. (authored by kompan).
Rename matchpoint algorithm browser view page.
Fri, Sep 18, 2:18 PM
kompan lowered the priority of T27745: [MITKDoc] Revise Model Fit Generic View Documentation from Normal to Low.
Fri, Sep 18, 12:34 PM · Cleared, MITK (2020)
kompan triaged T27747: New data selection concept for ModelFit Generic Data Fitting as Low priority.
Fri, Sep 18, 12:28 PM · Next Milestone, MITK
kompan claimed T27744: [MITKDoc] Revise Model Fit Demo View Documentation.
Fri, Sep 18, 12:18 PM · Cleared, MITK (2020)
kompan triaged T27746: New data selection concept for Fit Generator Demo View as Low priority.
Fri, Sep 18, 11:40 AM · Next Milestone, MITK
kompan triaged T27745: [MITKDoc] Revise Model Fit Generic View Documentation as Normal priority.
Fri, Sep 18, 10:41 AM · Cleared, MITK (2020)
kompan triaged T27744: [MITKDoc] Revise Model Fit Demo View Documentation as Normal priority.
Fri, Sep 18, 10:40 AM · Cleared, MITK (2020)
kompan claimed T27743: Clean up table of contents of doxygen documentation.
Fri, Sep 18, 8:50 AM · Cleared, MITK (2020)
kompan triaged T27743: Clean up table of contents of doxygen documentation as Normal priority.
Fri, Sep 18, 8:50 AM · Cleared, MITK (2020)

Thu, Sep 17

eisenman added a comment to T27677: Update text in reports (feedback from Lena).

Almost all suggestions from Lena can be realized, apart from listing the metrics in the meta data which we don't know.

Thu, Sep 17, 3:41 PM · challengeR (v1.0)
eisenman placed T27360: compatibility with R4.0.0 up for grabs.
Thu, Sep 17, 2:55 PM · challengeR (v1.0)
eisenman moved T27740: Add missing imports from In Progress to Done on the challengeR (v1.0) board.
Thu, Sep 17, 2:53 PM · challengeR (v1.0)
eisenman moved T27252: Multiple cases per algorithm are not detected when missing data was added before from In Progress to Done on the challengeR (v1.0) board.
Thu, Sep 17, 2:52 PM · challengeR (v1.0)
eisenman committed rCHALLENGER6a9fa7994fc2: Merge branch 'feature/T27740-AddMissingImports' into develop (authored by eisenman).
Merge branch 'feature/T27740-AddMissingImports' into develop
Thu, Sep 17, 2:51 PM
eisenman committed rCHALLENGER5070907484ec: Add missing imports (authored by eisenman).
Add missing imports
Thu, Sep 17, 2:49 PM
eisenman moved T27740: Add missing imports from Backlog to In Progress on the challengeR (v1.0) board.
Thu, Sep 17, 2:48 PM · challengeR (v1.0)
eisenman triaged T27740: Add missing imports as High priority.
Thu, Sep 17, 2:48 PM · challengeR (v1.0)
eisenman added a comment to T27453: Create complete network plot in its function.

Is it not possible to create a plot first on a canvas that contains everything and as a second step add the scaled plot to the report?

Thu, Sep 17, 1:45 PM · challengeR (v1.0)
kompan triaged T27739: Inspection positions deletion in ModelFit not updated in data display. as Normal priority.
Thu, Sep 17, 1:07 PM · Cleared, Next Milestone, MITK
kompan triaged T27738: Curve Color selection not possible in ModelFit Inspector view settings as Normal priority.
Thu, Sep 17, 1:02 PM · Cleared, Next Milestone, MITK

Wed, Sep 16

thomass added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

I agree :)

Wed, Sep 16, 1:35 PM · Restricted Project, Cleared, MITK (2020)
kalali added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

We discussed the open todos concerning Checklists (storage, format, language) and decided that this topic should be prioritized higher but not for the milestone of the new release / current documentation refactoring.
I think this would be a good option for the phase after the release but if you have a strong point to do it now, please state here.

Wed, Sep 16, 12:21 PM · Restricted Project, Cleared, MITK (2020)
thomass added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

just started to have a look.

Wed, Sep 16, 12:06 PM · Restricted Project, Cleared, MITK (2020)
eisenman added a comment to T27338: Report contains misleading information on missing values.

I like the proposal!
"0 missing cases have been found in the data set. However, performance of not all algorithms has been observed for all cases. Therefor, missings have been inserted in the following cases:"

Wed, Sep 16, 9:43 AM · challengeR (v1.0)

Tue, Sep 15

kalali raised the priority of T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" from Normal to High.

@thomass, @gaoh Can someone please proofread?

Tue, Sep 15, 8:11 PM · Restricted Project, Cleared, MITK (2020)
kalali raised the priority of T27737: Extend "Checkliste Segmentierung – Optionen" from Normal to High.
Tue, Sep 15, 8:02 PM · Restricted Project, Cleared, MITK (2020)
kalali updated the task description for T25804: Set 'selected' property when using the new selection concept.
Tue, Sep 15, 7:54 PM · Request for Discussion, MITK

Mon, Sep 14

schererj added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

Yes, the workbench is starting without any issues.

Mon, Sep 14, 6:07 PM · Missing Info, DICOM, MITK
gaoh added a member for SIDT: m139l.
Mon, Sep 14, 4:40 PM
gaoh closed T27110: [MITKDoc] Revise Command Line Tool/ Automatisation Plugin Documentation as Resolved.
Mon, Sep 14, 3:32 PM · Cleared, MITK (2020)
gaoh committed rMITKc4b6bb115cd1: T27110 Revice Command Line Tool. (authored by gaoh).
T27110 Revice Command Line Tool.
Mon, Sep 14, 3:28 PM
gaoh committed rMITK032e29703e98: T27110 Revice Command Line Tool: (authored by gaoh).
T27110 Revice Command Line Tool:
Mon, Sep 14, 3:28 PM
gaoh committed rMITK0fdef86d49b2: update plugin name cmdlinemodules (authored by gaoh).
update plugin name cmdlinemodules
Mon, Sep 14, 3:28 PM
gaoh committed rMITKe22741af90b4: Merge branch 'develop' into feature/T27110ReviseCommandLineTool (authored by gaoh).
Merge branch 'develop' into feature/T27110ReviseCommandLineTool
Mon, Sep 14, 3:28 PM
gaoh committed rMITKcb64d430b5fa: Merge branch 'develop' into feature/T27110ReviseCommandLineTool (authored by gaoh).
Merge branch 'develop' into feature/T27110ReviseCommandLineTool
Mon, Sep 14, 3:28 PM
gaoh committed rMITKc91fd01c42af: updated image statistics documentation. (authored by gaoh).
updated image statistics documentation.
Mon, Sep 14, 3:28 PM
floca added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

Did you your "release ldd" Workbench started and worked properly at all? Seems like most of the SOs could not be loaded correctly. Not even MitkCore. I would assume that workbench does not even start?!?

Mon, Sep 14, 3:24 PM · Missing Info, DICOM, MITK
kalali updated the task description for T27737: Extend "Checkliste Segmentierung – Optionen".
Mon, Sep 14, 2:45 PM · Restricted Project, Cleared, MITK (2020)
kalali triaged T27737: Extend "Checkliste Segmentierung – Optionen" as Normal priority.
Mon, Sep 14, 2:42 PM · Restricted Project, Cleared, MITK (2020)
kalali moved T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" from Backlog to Segmentation on the MITK (2020) board.
Mon, Sep 14, 2:39 PM · Restricted Project, Cleared, MITK (2020)
schererj added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

I hope I did it right..

Mon, Sep 14, 1:19 PM · Missing Info, DICOM, MITK
kalali added a revision to T24771: [MITKDoc] Add a concept documentation for the data storage inspectors and the overhaul of the selection concept: Unknown Object (Differential Revision).
Mon, Sep 14, 1:13 PM · MITK (2020)
gaoh added a member for Kaapana (internal): m139l.
Mon, Sep 14, 1:10 PM
rosst committed rRMISf8b356bc0a20: add create participants statistics (authored by rosst).
add create participants statistics
Mon, Sep 14, 12:01 PM
kompan committed rMITK75a9f6c2b734: Revision of perfusion curve descriptive parameters view documentation (T27709… (authored by kompan).
Revision of perfusion curve descriptive parameters view documentation (T27709…
Mon, Sep 14, 9:19 AM
kompan committed rMITKeb645be6e729: Remove contact information section. (authored by kompan).
Remove contact information section.
Mon, Sep 14, 9:19 AM
kompan committed rMITK959aa2589d57: Rewrite manual and add parameter calculation visualization figure. (authored by kompan).
Rewrite manual and add parameter calculation visualization figure.
Mon, Sep 14, 9:18 AM
kompan committed rMITK64fd20fdc2e5: Adapt vies names for F1-help. (authored by kompan).
Adapt vies names for F1-help.
Mon, Sep 14, 9:18 AM

Sat, Sep 12

kalali renamed T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" from Extend "Checkliste Segmentierung – Manuelle Segmentierung" to Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".
Sat, Sep 12, 1:04 PM · Restricted Project, Cleared, MITK (2020)
kalali updated subscribers of T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

I updated the document and added content to explicitly tests

  • segmentation on a 3D image
  • 3D segmentation (static) on a 4D image
  • 4D segmentation (dynamic) on a 4D image
Sat, Sep 12, 12:56 PM · Restricted Project, Cleared, MITK (2020)

Fri, Sep 11

floca updated subscribers of T27718: Miniapp for basic DICOM testing.

@schererj Is this needed for the kaapana release?

Fri, Sep 11, 9:22 PM · Kaapana (internal), MITK
floca added a comment to T27718: Miniapp for basic DICOM testing.

check content, e.g. if != 0 voxels exist etc

Fri, Sep 11, 9:13 PM · Kaapana (internal), MITK
kalali triaged T27721: [Segmentation] 2D Fast Marching crashes with 4D image and static segmentation as High priority.
Fri, Sep 11, 6:29 PM · MITK (2020)
kislinsk triaged T27720: mitkPackageTest fails on Windows Nightlies as Normal priority.
Fri, Sep 11, 3:19 PM · MITK (2020)
floca added a comment to T27569: US DICOM images are displayed turquoise and LUT cannot be changed.

Just checked GDCM 3.0.7 if by chance the issue was fixed there, unfortunately not.

Fri, Sep 11, 3:15 PM · Request for Discussion, Restricted Project, MITK
kislinsk placed T27701: Plugin Generator tests fail up for grabs.
Fri, Sep 11, 3:09 PM · Request for Discussion, MITK (2020)
kislinsk committed rMITKa02df44c8039: Merge branch 'bugfix/T27701-PluginGenerator' into develop (authored by kislinsk).
Merge branch 'bugfix/T27701-PluginGenerator' into develop
Fri, Sep 11, 3:09 PM
kislinsk added a comment to T27701: Plugin Generator tests fail.

Pushed new branch bugfix/T27701-PluginGenerator.

Fri, Sep 11, 3:08 PM · Request for Discussion, MITK (2020)
nolden added a comment to T27569: US DICOM images are displayed turquoise and LUT cannot be changed.

http://gdcm.sourceforge.net/wiki/index.php/Color_Space_Transformations

Fri, Sep 11, 2:30 PM · Request for Discussion, Restricted Project, MITK
nolden added a comment to T27569: US DICOM images are displayed turquoise and LUT cannot be changed.

Just checked GDCM 3.0.7 if by chance the issue was fixed there, unfortunately not.

Fri, Sep 11, 2:27 PM · Request for Discussion, Restricted Project, MITK
kalali updated the task description for T26754: Review checklists.
Fri, Sep 11, 1:55 PM · Request for Discussion, Restricted Project, MITK
neher added a comment to T27718: Miniapp for basic DICOM testing.

check content, e.g. if != 0 voxels exist etc

Fri, Sep 11, 1:13 PM · Kaapana (internal), MITK
kalali moved T23811: PatientViewPlugin ++ from MITK Meeting to Backlog on the Request for Discussion board.
Fri, Sep 11, 12:51 PM · Request for Discussion, MITK
kompan added a comment to T27713: [Segmentation] Disable "New" button when no image is selected.

Good point! It only occurs after I have removed the image node. When I initially open the segmentation plugin, the new button still is deactivated as it should be.

Fri, Sep 11, 12:39 PM · MITK (2020)
kalali moved T26854: Unattended Qt installation from In Progress to Backlog on the CI board.
Fri, Sep 11, 12:36 PM · CI, Restricted Project, MITK
kalali added a comment to T27713: [Segmentation] Disable "New" button when no image is selected.

Also, the "red warning" does not change back to "Please select an image" if an image is removed (which was automatically selected before).

Fri, Sep 11, 12:35 PM · MITK (2020)
kislinsk triaged T27718: Miniapp for basic DICOM testing as Wishlist priority.
Fri, Sep 11, 12:27 PM · Kaapana (internal), MITK
kislinsk triaged T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start as Normal priority.
Fri, Sep 11, 12:26 PM · MITK (2020)
kislinsk added a parent task for T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start : T27196: Rewrite packaging of MITK.
Fri, Sep 11, 12:25 PM · MITK (2020)