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Fri, Dec 13

ericheim created T26930: Crash Ubuntu 18.04.3 Qt 5.12.4.
Fri, Dec 13, 9:25 AM · MITK

Thu, Dec 12

kislinsk committed rMITK0f8a56ccc4bf: Fix swapping to temporary (authored by kislinsk).
Fix swapping to temporary
Thu, Dec 12, 3:22 PM
kislinsk committed rMITKcfdaacfc3473: Merge branch 'T26921-FixCompileErrors' (authored by kislinsk).
Merge branch 'T26921-FixCompileErrors'
Thu, Dec 12, 3:21 PM
kislinsk committed rMITKf258bcd91a13: Fix swapping to temporary (authored by kislinsk).
Fix swapping to temporary
Thu, Dec 12, 3:21 PM
kislinsk committed rMITKacc546ec9313: Use std::queue's own swap function (authored by kislinsk).
Use std::queue's own swap function
Thu, Dec 12, 3:18 PM
kislinsk committed rMITKe178c6b0e73c: Merge branch 'T26921-FixCompileErrors' (authored by kislinsk).
Merge branch 'T26921-FixCompileErrors'
Thu, Dec 12, 3:16 PM
kislinsk committed rMITKd6a64191cb0f: Use std::queue's own swap function (authored by kislinsk).
Use std::queue's own swap function
Thu, Dec 12, 3:16 PM
kislinsk closed T26921: Latest Visual Studio 16.4 2019 reveals some bugs that result in compile errors as Resolved.

Back-ported/cherry-picked fixes also to releases/2018-04.

Thu, Dec 12, 3:09 PM · MITK (2018-04-4)
kislinsk committed rMITKd04a914d39db: Fix incomplete code comment (authored by kislinsk).
Fix incomplete code comment
Thu, Dec 12, 3:09 PM
kislinsk committed rMITK453ed5f95880: Fix discarded return value of function with nodiscard attribute (authored by kislinsk).
Fix discarded return value of function with nodiscard attribute
Thu, Dec 12, 3:09 PM
kislinsk committed rMITKf4e2436ce065: Fix wrong use of .empty() to clear containers (authored by kislinsk).
Fix wrong use of .empty() to clear containers
Thu, Dec 12, 3:09 PM
kislinsk committed rMITK9b78e0bf440e: Merge branch 'T26921-FixCompileErrors' (authored by kislinsk).
Merge branch 'T26921-FixCompileErrors'
Thu, Dec 12, 3:06 PM
kislinsk committed rMITK8a975b2f6517: Fix incomplete code comment (authored by kislinsk).
Fix incomplete code comment
Thu, Dec 12, 3:05 PM
kislinsk committed rMITK1307f9b641db: Fix discarded return value of function with nodiscard attribute (authored by kislinsk).
Fix discarded return value of function with nodiscard attribute
Thu, Dec 12, 3:05 PM
kislinsk committed rMITKa0585a02a272: Fix wrong use of .empty() to clear containers (authored by kislinsk).
Fix wrong use of .empty() to clear containers
Thu, Dec 12, 3:05 PM
kislinsk added a comment to T26921: Latest Visual Studio 16.4 2019 reveals some bugs that result in compile errors.

Pushed new branch T26921-FixCompileErrors.

Thu, Dec 12, 3:04 PM · MITK (2018-04-4)
kislinsk triaged T26921: Latest Visual Studio 16.4 2019 reveals some bugs that result in compile errors as High priority.
Thu, Dec 12, 3:01 PM · MITK (2018-04-4)
adler added a member for Deep Learning: j806e.
Thu, Dec 12, 1:45 PM
adler added a member for CAMI: j806e.
Thu, Dec 12, 1:44 PM

Wed, Dec 11

ramien committed rMDTPUBLICb72bc879b5dd: smooth in dice loss, no double logging consec folds (authored by ramien).
smooth in dice loss, no double logging consec folds
Wed, Dec 11, 8:52 PM
ramien committed rREGRCNNc9ddf41bc42d: file logger separate files per fold (authored by ramien).
file logger separate files per fold
Wed, Dec 11, 8:45 PM
ramien committed rREGRCNN56fb0d3e86d3: file logger separate files per fold (authored by ramien).
file logger separate files per fold
Wed, Dec 11, 8:45 PM
ramien committed rREGRCNNd3df3ad374b8: file logger separate files per fold (authored by ramien).
file logger separate files per fold
Wed, Dec 11, 8:37 PM
ramien committed rREGRCNNd76bd4f6a313: smooth also in dice loss (authored by ramien).
smooth also in dice loss
Wed, Dec 11, 8:37 PM
ramien committed rMDTPUBLIC018e9a8bacf0: python3.6 in readme (authored by ramien).
python3.6 in readme
Wed, Dec 11, 5:06 PM
ramien committed rMDTPUBLIC0a1f0bd76474: use batchgenerators 19.3 (authored by ramien).
use batchgenerators 19.3
Wed, Dec 11, 4:59 PM
ramien committed rMDTPUBLIC90792de2851b: Merge branch 'torch1x' (authored by ramien).
Merge branch 'torch1x'
Wed, Dec 11, 4:57 PM
ramien committed rMDTPUBLIC1065780b69ff: exec logger fix (authored by ramien).
exec logger fix
Wed, Dec 11, 4:57 PM
ramien committed rMDTPUBLICa58d397f53a9: issue #91 (authored by ramien).
issue #91
Wed, Dec 11, 4:57 PM
ramien committed rMDTPUBLIC5aad8b09ea02: re-added assets (authored by ramien).
re-added assets
Wed, Dec 11, 4:57 PM
ramien committed rMDTPUBLICcba44c909891: realigning file tracking (authored by ramien).
realigning file tracking
Wed, Dec 11, 4:57 PM
ramien committed rMDTPUBLIC3ef7d8974aa0: fix retina unet norm in final conv, toy_exp class_spec_seg_flag (authored by ramien).
fix retina unet norm in final conv, toy_exp class_spec_seg_flag
Wed, Dec 11, 4:57 PM
ramien committed rMDTPUBLIC7f1b5bf64963: consecutive fold-iterations fix, --dev (authored by ramien).
consecutive fold-iterations fix, --dev
Wed, Dec 11, 4:57 PM
ramien committed rMDTPUBLICa2a644d8c413: premerge (authored by ramien).
premerge
Wed, Dec 11, 4:57 PM
kalali added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

There seems to be a problem with the -DBUILD_TESTING:BOOL=OFF option.
If you use CMake-GUI the variable is ON per default when first configured and is then set to OFF (if you choose so) and re-configured.

Wed, Dec 11, 12:48 PM · MITK

Tue, Dec 10

ramien committed rREGRCNN243edec6bb84: readme and make exp parent dirs (authored by ramien).
readme and make exp parent dirs
Tue, Dec 10, 2:55 PM
ramien committed rREGRCNN1f00e7ec5402: readme and make exp parent dirs (authored by ramien).
readme and make exp parent dirs
Tue, Dec 10, 2:53 PM
ramien committed rREGRCNN0f62b2f242ae: public branch update to torch 1.3, python 3.7 (authored by ramien).
public branch update to torch 1.3, python 3.7
Tue, Dec 10, 2:13 PM
ramien committed rREGRCNNb5b8b66f5d6a: torch 1.3.1 and python 3.7 finalization (authored by ramien).
torch 1.3.1 and python 3.7 finalization
Tue, Dec 10, 2:13 PM
holzwart triaged T26907: B-Mode bug as Unbreak Now! priority.
Tue, Dec 10, 1:37 PM · Photoacoustics

Mon, Dec 9

ramien committed rREGRCNNc3b975bf8593: torch 1.3.1 and python 3.7 finalization (authored by ramien).
torch 1.3.1 and python 3.7 finalization
Mon, Dec 9, 8:46 PM
ramien committed rREGRCNN2b8f692e1e24: torch 1.3.1 and python 3.7 finalization (authored by ramien).
torch 1.3.1 and python 3.7 finalization
Mon, Dec 9, 8:46 PM
ramien committed rREGRCNN42791e8e7808: re-added assets (authored by ramien).
re-added assets
Mon, Dec 9, 8:46 PM
ramien committed rREGRCNN28e3795cd083: max patients in defconfigs (authored by ramien).
max patients in defconfigs
Mon, Dec 9, 8:46 PM
gaoh added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

A two step build also works:

Mon, Dec 9, 4:52 PM · MITK
ramien committed rMDTPUBLICed5dc83449c0: requirements fix (authored by ramien).
requirements fix
Mon, Dec 9, 3:27 PM
ramien committed rREGRCNN4988eae1058b: rm test error (authored by ramien).
rm test error
Mon, Dec 9, 3:15 PM
ramien committed rREGRCNNfb069cab219c: readme, unittests (authored by ramien).
readme, unittests
Mon, Dec 9, 3:12 PM
ramien committed rREGRCNNbbc555597677: pre python reinstall (authored by ramien).
pre python reinstall
Mon, Dec 9, 3:12 PM
ramien committed rREGRCNN9fa97251b650: reqs (authored by ramien).
reqs
Mon, Dec 9, 3:12 PM
ramien committed rREGRCNN5083824c597c: fixes, nms behaviour like pytorch (no +1), unittests (authored by ramien).
fixes, nms behaviour like pytorch (no +1), unittests
Mon, Dec 9, 3:12 PM
ramien committed rREGRCNNa46f796a0998: unresolved no program exit if no sysmetrics logging (authored by ramien).
unresolved no program exit if no sysmetrics logging
Mon, Dec 9, 3:12 PM
ramien committed rREGRCNN063acf749129: hangup present (authored by ramien).
hangup present
Mon, Dec 9, 3:12 PM
ramien committed rREGRCNN819dd06c5953: tracking exit hangup (authored by ramien).
tracking exit hangup
Mon, Dec 9, 3:12 PM
ramien committed rREGRCNN3276398fef24: autom exts install (authored by ramien).
autom exts install
Mon, Dec 9, 3:12 PM
ramien committed rREGRCNN033782e8a086: tracking exit hangup (authored by ramien).
tracking exit hangup
Mon, Dec 9, 3:12 PM
ramien committed rREGRCNN9aabe021fdf5: tracking exit hangup (authored by ramien).
tracking exit hangup
Mon, Dec 9, 3:12 PM

Fri, Dec 6

floca added a comment to T25192: Enable DICOM SEG conversion for nrrd segmentations.

NOT READY FOR MASTER!
Already add serialization of properties marked as persistent to the multilabel nrrd writer. Also copied the code from image nrrd file reader to get all properties while reading a nrrd image (not nice but works). But testing was only for one use case. So looking for side effects before merging this commit (6f1b022e7b8d) into master.

Fri, Dec 6, 6:28 PM · MICO (Demo MICCAI 2018), MITK
floca added a comment to T26903: DICOM Seg writing is broken due to changes in DICOMSEGIOMimeType.

rMITK060c74e0e13601d6ccd7653122ce65e2e7fae181 is a proposed fix for the problem.
@neher Do you see any problems?

Fri, Dec 6, 6:18 PM · Request for Discussion, MITK
floca committed rMITK060c74e0e136: Patched problem due to T26903 in order to allow storing of DICOM seg again. (authored by floca).
Patched problem due to T26903 in order to allow storing of DICOM seg again.
Fri, Dec 6, 6:17 PM
floca committed rMITK427d7f56e989: Corrected command line argument name (authored by floca).
Corrected command line argument name
Fri, Dec 6, 6:17 PM
floca triaged T26903: DICOM Seg writing is broken due to changes in DICOMSEGIOMimeType as Unbreak Now! priority.
Fri, Dec 6, 6:07 PM · Request for Discussion, MITK
ramien committed rREGRCNN81e1a4211f00: copyright in readme (authored by ramien).
copyright in readme
Fri, Dec 6, 5:23 PM
franza committed rMITK9f539789b364: second tool is now the marker for CT registration as the first tool is the… (authored by franza).
second tool is now the marker for CT registration as the first tool is the…
Fri, Dec 6, 5:05 PM
franza committed rMITK171a0be8eea3: cleaned up ui for better demo (authored by franza).
cleaned up ui for better demo
Fri, Dec 6, 5:05 PM
franza committed rMITK84a92de3d649: added feature to visualize different surfaces (authored by franza).
added feature to visualize different surfaces
Fri, Dec 6, 5:05 PM
franza committed rMITK417c638dc862: Added console output of different transforms (authored by franza).
Added console output of different transforms
Fri, Dec 6, 5:05 PM
floca updated subscribers of T26897: Build error: Could not find git for clone of qRestAPI.

I have managed to compile now just using cmake cli, when doing the following:

Fri, Dec 6, 4:38 PM · MITK
floca committed rMITK31d1c60d7158: Fixes broken ExtractSliceFilter (authored by floca).
Fixes broken ExtractSliceFilter
Fri, Dec 6, 4:26 PM
floca added a comment to T26167: ExtractSliceFilter handles 3D+t images inefficiently and inconsequently.

Pushed new branch T26167-Fix_broken_test.

Fri, Dec 6, 4:26 PM · MITK
kalali added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

Using CMake command line I get this error with my local windows, if I build it the second time.

Fri, Dec 6, 3:59 PM · MITK
kislinsk assigned T26854: Unattended Qt installation to kalali.
Fri, Dec 6, 3:55 PM · CI, Restricted Project, MITK
kislinsk placed T26854: Unattended Qt installation up for grabs.
Fri, Dec 6, 3:47 PM · CI, Restricted Project, MITK
kalali moved T26849: Remove polling loop from continuous CDash scripts from Backlog to Done on the CI board.
Fri, Dec 6, 3:44 PM · CI, MITK (2018-04-4)
kalali added a project to T26849: Remove polling loop from continuous CDash scripts: CI.
Fri, Dec 6, 3:44 PM · CI, MITK (2018-04-4)
kislinsk closed T26849: Remove polling loop from continuous CDash scripts as Resolved.
Fri, Dec 6, 3:43 PM · CI, MITK (2018-04-4)
kislinsk closed T25256: MITK license file features "Division of Medical and Biological Informatics" as Resolved.
Fri, Dec 6, 3:40 PM · MITK
kislinsk committed rMPTdc1554a13695: Unify license and copyright headers (authored by kislinsk).
Unify license and copyright headers
Fri, Dec 6, 3:35 PM
kislinsk closed T26893: GitHub doesn't recognize our license as Wontfix.

I give up, it makes no sense to put much time into this until Github clearly communicates the heuristic to detect the license.

Fri, Dec 6, 3:08 PM · MITK
floca updated subscribers of T26167: ExtractSliceFilter handles 3D+t images inefficiently and inconsequently.

@kompan It is now in the master. ;)

Fri, Dec 6, 3:00 PM · MITK
floca added a reverting change for rMITK1f815a9b6d98: Test of performance impact of simplified (unsafer) ArbitraryTimeGeometry: rMITK1f6747197e81: Fixed T26167. ExtractSliceFilter does not clone unnecessarily the input….
Fri, Dec 6, 2:55 PM
floca committed rMITK1f6747197e81: Fixed T26167. ExtractSliceFilter does not clone unnecessarily the input… (authored by floca).
Fixed T26167. ExtractSliceFilter does not clone unnecessarily the input…
Fri, Dec 6, 2:55 PM
floca committed rMITK0c068a29b4af: Fixed review remarks (authored by floca).
Fixed review remarks
Fri, Dec 6, 2:55 PM
floca closed T26167: ExtractSliceFilter handles 3D+t images inefficiently and inconsequently as Resolved by committing rMITK1f6747197e81: Fixed T26167. ExtractSliceFilter does not clone unnecessarily the input….
Fri, Dec 6, 2:54 PM · MITK
neher closed T26420: [MITK Diffusion] Check angular threshold as Invalid.
Fri, Dec 6, 2:46 PM · MITK
neher closed T26902: Remove division from copyright as Resolved.
Fri, Dec 6, 2:46 PM · MITK Diffusion
neher committed rMITKDIFF2d09941d3edd: Merge branch 'T26902-Copyright' (authored by neher).
Merge branch 'T26902-Copyright'
Fri, Dec 6, 2:44 PM
neher committed rMITKDIFF8ee0a516b183: Remove division (authored by neher).
Remove division
Fri, Dec 6, 2:39 PM
neher added a comment to T26902: Remove division from copyright.

Pushed new branch T26902-Copyright.

Fri, Dec 6, 2:39 PM · MITK Diffusion
kislinsk committed rMITK56c0ba1005be: Merge branch 'T26893-GitHubCompatibleLicenseFile' (authored by kislinsk).
Merge branch 'T26893-GitHubCompatibleLicenseFile'
Fri, Dec 6, 2:38 PM
kislinsk committed rMITKa724ab165f2e: Move COPYRIGHT_HEADER to Templates/copyright_header.txt (authored by kislinsk).
Move COPYRIGHT_HEADER to Templates/copyright_header.txt
Fri, Dec 6, 2:37 PM
neher triaged T26902: Remove division from copyright as Normal priority.
Fri, Dec 6, 2:37 PM · MITK Diffusion
neher closed T26896: Fix tractseg as Resolved.
Fri, Dec 6, 2:18 PM · MITK Diffusion
kislinsk archived Mint Medical GmbH.
Fri, Dec 6, 2:01 PM
neher committed rMITKDIFF5b3377815d1e: Merge branch 'T26896-TractSeg' (authored by neher).
Merge branch 'T26896-TractSeg'
Fri, Dec 6, 1:53 PM
neher committed rMITKDIFF53428942c250: UI updates (authored by neher).
UI updates
Fri, Dec 6, 1:53 PM
neher committed rMITKDIFF8ddfcf37696d: Flipping axes correctly (authored by neher).
Flipping axes correctly
Fri, Dec 6, 1:53 PM
neher committed rMITKDIFFef27a3d4ccef: Adjust resource location (authored by neher).
Adjust resource location
Fri, Dec 6, 1:53 PM
neher added a comment to T26896: Fix tractseg .

Pushed new branch T26896-TractSeg.

Fri, Dec 6, 1:53 PM · MITK Diffusion
kislinsk committed rMITKb1ef2d248b65: Merge branch 'T26893-GitHubCompatibleLicenseFile' (authored by kislinsk).
Merge branch 'T26893-GitHubCompatibleLicenseFile'
Fri, Dec 6, 1:52 PM