Page MenuHomePhabricator
Feed All Stories

Today

kalali committed rMITKca5e1261220c: Add json files for latest revisions (authored by kalali).
Add json files for latest revisions
Wed, Jan 26, 8:44 PM
kalali committed rMITK7946fef5d223: Add json files for latest revisions (authored by kalali).
Add json files for latest revisions
Wed, Jan 26, 8:44 PM
scholzpa closed T28034: Deep Learning for Sepsis Classification on Parameter Images as Resolved.
Wed, Jan 26, 4:35 PMRestricted Project
menjivar added a comment to T28034: Deep Learning for Sepsis Classification on Parameter Images.

IS this task still active? If not please close it 馃槃

Wed, Jan 26, 3:21 PMRestricted Project
neher committed rMITKDIFFbaa78614307d: added basic segment creation (authored by neher).
added basic segment creation
Wed, Jan 26, 1:17 PM
neher added a comment to T28947: tract rad.

Pushed new branch T28947-TractRad.

Wed, Jan 26, 1:17 PMMITK Diffusion
gaoh added a comment to T28946: MITK Flow - Save Segmentation - Error/Exception Handling.

Input data to reproduce the error:

Wed, Jan 26, 12:50 PMKaapana (internal), MITK
kalali removed a project from T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation: Request for Discussion.
Wed, Jan 26, 12:31 PMMITK (v2022.04), Breaking Change
kalali removed a project from T27913: [Segmentation] Warnings in utilities view are inconsistent: Request for Discussion.
Wed, Jan 26, 12:30 PMMITK (v2022.04)
kalali renamed T27637: [Segmentation] Multilabel label name dialog on label creation is a UX problem from [Segmentation] Multilabel label name dialoge on label creation is a UX problem to [Segmentation] Multilabel label name dialog on label creation is a UX problem.
Wed, Jan 26, 12:29 PMMITK (v2022.04), Cleared
kalali removed a project from T27637: [Segmentation] Multilabel label name dialog on label creation is a UX problem: Request for Discussion.
Wed, Jan 26, 12:29 PMMITK (v2022.04), Cleared
neher triaged T28947: tract rad as Wishlist priority.
Wed, Jan 26, 12:28 PMMITK Diffusion
gaoh triaged T28946: MITK Flow - Save Segmentation - Error/Exception Handling as Normal priority.

We discussed in the meeting:

  1. Exception handling is a good idea and should be the way to handle it. So mitk has to throw the exception and not show a success.
  2. Since in the input image a required tag is missing, MITK cannot provide a fix, allowing a success in dcmqi
Wed, Jan 26, 11:40 AMKaapana (internal), MITK
kislinsk added a subtask for T25105: UpdateStatusBar duplicates business logic: T25043: Remove pixel informations from the statusbar and put it into views.
Wed, Jan 26, 11:40 AMMITK
kislinsk added a parent task for T25043: Remove pixel informations from the statusbar and put it into views: T25105: UpdateStatusBar duplicates business logic.
Wed, Jan 26, 11:40 AMCleared, MITK
kislinsk removed a project from T25105: UpdateStatusBar duplicates business logic: Request for Discussion.
Wed, Jan 26, 11:39 AMMITK
kislinsk edited projects for T25043: Remove pixel informations from the statusbar and put it into views, added: Cleared; removed Request for Discussion.

We again concluded that this information + some optional extra features should be shown by a view instead of the task bar. The idea is to have a kind of "core" view like the slice navigator that is usually shown in all perspectives but in the end is configurable.

Wed, Jan 26, 11:37 AMCleared, MITK
kislinsk moved T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation from MITK Meeting to Backlog on the Request for Discussion board.
Wed, Jan 26, 11:29 AMMITK (v2022.04), Breaking Change
kislinsk moved T27913: [Segmentation] Warnings in utilities view are inconsistent from MITK Meeting to Backlog on the Request for Discussion board.
Wed, Jan 26, 11:28 AMMITK (v2022.04)
kislinsk moved T27637: [Segmentation] Multilabel label name dialog on label creation is a UX problem from MITK Meeting to Backlog on the Request for Discussion board.
Wed, Jan 26, 11:28 AMMITK (v2022.04), Cleared
kalali triaged T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary" as Normal priority.
Wed, Jan 26, 11:06 AMRequest for Discussion, Next Milestone, MITK
kislinsk moved T28946: MITK Flow - Save Segmentation - Error/Exception Handling from Backlog to MITK Meeting on the Request for Discussion board.
Wed, Jan 26, 11:01 AMKaapana (internal), MITK
gaoh updated the task description for T28946: MITK Flow - Save Segmentation - Error/Exception Handling.
Wed, Jan 26, 9:53 AMKaapana (internal), MITK
gaoh created T28946: MITK Flow - Save Segmentation - Error/Exception Handling.
Wed, Jan 26, 9:51 AMKaapana (internal), MITK

Yesterday

kalali added a comment to T28941: Some 2D and 3D tools for segmentation are not available.

Hi Anurag and thank you for reporting.

Tue, Jan 25, 5:21 PMMITK
kalali added a comment to T28886: MITK Flowbench - Reopen created segmentation not working.

Please check if the problem persists now with T28903: [Segmentation] Monitoring of segmentation nodes in views is error prone/ not safe. merged into develop.

Tue, Jan 25, 5:05 PMMITK (v2022.04), Missing Info, Kaapana (internal)
s669m committed rKAAPANAe664de038a0c: updated the deployment platform file to install the platfrom from existing鈥 (authored by s669m).
updated the deployment platform file to install the platfrom from existing鈥
Tue, Jan 25, 4:35 PM
kalali created T28942: Ensure default properties for data nodes.
Tue, Jan 25, 1:33 PMMITK
kalali closed T28903: [Segmentation] Monitoring of segmentation nodes in views is error prone/ not safe., a subtask of T28886: MITK Flowbench - Reopen created segmentation not working, as Resolved.
Tue, Jan 25, 1:32 PMMITK (v2022.04), Missing Info, Kaapana (internal)
kalali closed T28903: [Segmentation] Monitoring of segmentation nodes in views is error prone/ not safe. as Resolved.
Tue, Jan 25, 1:32 PMMITK (v2022.04)
kalali committed rMITKcbc784320989: Monitor only selected nodes (authored by kalali).
Monitor only selected nodes
Tue, Jan 25, 1:32 PM
kalali committed rMITK69d601b0397c: Enable UI elements only if the selection is valid (authored by kalali).
Enable UI elements only if the selection is valid
Tue, Jan 25, 1:32 PM
kalali committed rMITK72c652949e64: Allow drawing without the reference node being visible (authored by kalali).
Allow drawing without the reference node being visible
Tue, Jan 25, 1:32 PM
kalali committed rMITK7b7b99f08fcc: Use observer only for working nodes (authored by kalali).
Use observer only for working nodes
Tue, Jan 25, 1:31 PM
gaoh closed Restricted Maniphest Task, a subtask of T27968: CTP gets stuck on large import, as Resolved.
Tue, Jan 25, 12:57 PMKaapana (internal)
Anurag triaged T28941: Some 2D and 3D tools for segmentation are not available as High priority.
Tue, Jan 25, 10:06 AMMITK
kalali added a revision to T28819: [View Navigator] View Names don't become bold when opened: Unknown Object (Differential Revision).
Tue, Jan 25, 9:58 AMChecklist, MITK

Fri, Jan 21

kalali added a comment to T28819: [View Navigator] View Names don't become bold when opened.

I tested this (because it was also mentioned in an Ubuntu checklist) and I have to add:

  • also doesn't work on Windows
  • also doesn't work if the view is opened normally via the plugin-icons
Fri, Jan 21, 4:48 PMChecklist, MITK
schererj committed rKAAPANAc42cd78382c7: Airflow user-management fix (authored by schererj).
Airflow user-management fix
Fri, Jan 21, 12:25 PM
gaoh committed rKAAPANA95709e3770c6: allow batch to single_execution in AutoTriggerOperator, if flag is set to true鈥 (authored by gaoh).
allow batch to single_execution in AutoTriggerOperator, if flag is set to true鈥
Fri, Jan 21, 11:00 AM

Thu, Jan 20

schererj committed rKAAPANA26de734d9a6f: replaced elasticsearch (authored by schererj).
replaced elasticsearch
Thu, Jan 20, 5:24 PM
schererj committed rKAAPANA62995e92aaf8: basics running (authored by schererj).
basics running
Thu, Jan 20, 5:24 PM
kalali updated the task description for T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation.
Thu, Jan 20, 2:21 PMRequest for Discussion, MITK (v2022.04), Breaking Change
kalali added a comment to T28640: [Segmentation] Add tool checks for dynamic plugin view.

Should be done within mitk::Tool::CanHandle, e.g. see https://phabricator.mitk.org/source/mitk/browse/develop/Modules/Segmentation/Interactions/mitkAdaptiveRegionGrowingTool.cpp$41 or https://phabricator.mitk.org/source/mitk/browse/develop/Modules/Segmentation/Interactions/mitkFastMarchingBaseTool.cpp$57

Thu, Jan 20, 2:12 PMMITK (v2022.04)
kalali removed a subtask for T27807: [MultiLabel Segmentation] Inspection of module and plugin: T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.
Thu, Jan 20, 1:58 PMMITK (v2022.04)
kalali removed parent tasks for T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation, T27807: [MultiLabel Segmentation] Inspection of module and plugin.
Thu, Jan 20, 1:58 PMNext Milestone, MITK, Restricted Project, Cleared
kalali removed a subtask for T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation: T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.
Thu, Jan 20, 1:58 PMMITK (v2022.04), Breaking Change
s434n triaged T28937: [ModelFit] Rethink mitkT2DecayModel as Low priority.
Thu, Jan 20, 11:54 AMMITK (v2022.04)
kalali lowered the priority of T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View from Unbreak Now! to Normal.

We decided to have a workaround for this issue (related to T28640: [Segmentation] Add tool checks for dynamic plugin view) so that this tasks does not block T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation.
We will continue working on this issue later this year if T28524: Refactor LabelSetImage and associated classes. is done.

Thu, Jan 20, 11:51 AMNext Milestone, MITK, Restricted Project, Cleared
kalali lowered the priority of T28640: [Segmentation] Add tool checks for dynamic plugin view from Unbreak Now! to High.
Thu, Jan 20, 11:49 AMMITK (v2022.04)
kalali added a subtask for T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation: T28510: [Segmentation Utilities] Switched definitions in documentation.
Thu, Jan 20, 11:11 AMRequest for Discussion, MITK (v2022.04), Breaking Change
kalali added a parent task for T28510: [Segmentation Utilities] Switched definitions in documentation: T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation.
Thu, Jan 20, 11:11 AMMITK
kalali removed a subtask for T27807: [MultiLabel Segmentation] Inspection of module and plugin: T27809: [Multilabel Segmentation] "Labels" tabs in operations of Utilities view is empty.
Thu, Jan 20, 11:11 AMMITK (v2022.04)
kalali added a subtask for T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation: T27809: [Multilabel Segmentation] "Labels" tabs in operations of Utilities view is empty.
Thu, Jan 20, 11:11 AMRequest for Discussion, MITK (v2022.04), Breaking Change
kalali edited parent tasks for T27809: [Multilabel Segmentation] "Labels" tabs in operations of Utilities view is empty, added: T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation; removed: T27807: [MultiLabel Segmentation] Inspection of module and plugin.
Thu, Jan 20, 11:10 AMMITK
kalali added a subtask for T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation: T27810: [Multilabel Segmentation] Inconsistencies and unclear functionality in operations of Utilities view.
Thu, Jan 20, 11:10 AMRequest for Discussion, MITK (v2022.04), Breaking Change
kalali removed a subtask for T27807: [MultiLabel Segmentation] Inspection of module and plugin: T27810: [Multilabel Segmentation] Inconsistencies and unclear functionality in operations of Utilities view.
Thu, Jan 20, 11:10 AMMITK (v2022.04)
kalali edited parent tasks for T27810: [Multilabel Segmentation] Inconsistencies and unclear functionality in operations of Utilities view, added: T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation; removed: T27807: [MultiLabel Segmentation] Inspection of module and plugin.
Thu, Jan 20, 11:10 AMMITK (v2022.04), Cleared, Restricted Project
kalali added a subtask for T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation: T28801: [MultiLabel Segmentation][Utilities] Exception thrown when converting to MultiLabel.
Thu, Jan 20, 11:09 AMRequest for Discussion, MITK (v2022.04), Breaking Change
kalali added a parent task for T28801: [MultiLabel Segmentation][Utilities] Exception thrown when converting to MultiLabel: T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation.
Thu, Jan 20, 11:09 AMMITK (v2022.04), Checklist
kalali added a subtask for T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation: T27913: [Segmentation] Warnings in utilities view are inconsistent.
Thu, Jan 20, 11:08 AMRequest for Discussion, MITK (v2022.04), Breaking Change
kalali removed a subtask for T28176: [Segmentation] Inspection of module and plugin: T27913: [Segmentation] Warnings in utilities view are inconsistent.
Thu, Jan 20, 11:08 AMMITK (v2022.04)
kalali edited parent tasks for T27913: [Segmentation] Warnings in utilities view are inconsistent, added: T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation; removed: T28176: [Segmentation] Inspection of module and plugin.
Thu, Jan 20, 11:08 AMMITK (v2022.04)
kalali added a subtask for T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation: T28264: [Segmentation Utilities] Various issues.
Thu, Jan 20, 11:08 AMRequest for Discussion, MITK (v2022.04), Breaking Change
kalali added a parent task for T28264: [Segmentation Utilities] Various issues: T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation.
Thu, Jan 20, 11:08 AMMITK (v2022.04), Cleared
kalali added a parent task for T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly: T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation.
Thu, Jan 20, 11:07 AMChecklist, MITK
kalali added a subtask for T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation: T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly.
Thu, Jan 20, 11:07 AMRequest for Discussion, MITK (v2022.04), Breaking Change
kalali added a parent task for T28797: [Segmentation[MultiLabel][Utilities] Using 4D data with dynamic segmentations results in 3D data: T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation.
Thu, Jan 20, 11:07 AMChecklist, MITK
kalali added a subtask for T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation: T28797: [Segmentation[MultiLabel][Utilities] Using 4D data with dynamic segmentations results in 3D data.
Thu, Jan 20, 11:07 AMRequest for Discussion, MITK (v2022.04), Breaking Change
kalali renamed T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation from [Seegmentation] Remove utilities redundancy with MultiLabelSegmentation to [Segmentation] Remove utilities redundancy with MultiLabelSegmentation.
Thu, Jan 20, 11:06 AMRequest for Discussion, MITK (v2022.04), Breaking Change
kalali added a subtask for T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation: T28134: [Multilabel Segmentation] No warning triggered when using different mask geometries / dimensions in Utilities View.
Thu, Jan 20, 11:04 AMRequest for Discussion, MITK (v2022.04), Breaking Change
kalali removed a subtask for T27807: [MultiLabel Segmentation] Inspection of module and plugin: T28134: [Multilabel Segmentation] No warning triggered when using different mask geometries / dimensions in Utilities View.
Thu, Jan 20, 11:04 AMMITK (v2022.04)
kalali edited parent tasks for T28134: [Multilabel Segmentation] No warning triggered when using different mask geometries / dimensions in Utilities View, added: T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation; removed: T27807: [MultiLabel Segmentation] Inspection of module and plugin.
Thu, Jan 20, 11:04 AMMITK (v2022.04), Cleared
kalali added a parent task for T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable: T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation.
Thu, Jan 20, 11:02 AMMITK (v2022.04), Checklist
kalali added a subtask for T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation: T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable.
Thu, Jan 20, 11:02 AMRequest for Discussion, MITK (v2022.04), Breaking Change
kalali added a subtask for T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation: T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations.
Thu, Jan 20, 11:02 AMRequest for Discussion, MITK (v2022.04), Breaking Change
kalali added a parent task for T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations: T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation.
Thu, Jan 20, 11:02 AMMissing Info, MITK (v2022.04)
kalali removed a subtask for T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation: T28752: [Segmentation] Move Segmentation utilities widgets to SegmentationUI module.
Thu, Jan 20, 11:00 AMMITK (v2022.04), Breaking Change
kalali added a subtask for T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation: T28752: [Segmentation] Move Segmentation utilities widgets to SegmentationUI module.
Thu, Jan 20, 11:00 AMRequest for Discussion, MITK (v2022.04), Breaking Change
kalali edited parent tasks for T28752: [Segmentation] Move Segmentation utilities widgets to SegmentationUI module, added: T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation; removed: T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation.
Thu, Jan 20, 11:00 AMMITK (v2022.04)
kalali edited parent tasks for T28524: Refactor LabelSetImage and associated classes., added: T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation; removed: T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations.
Thu, Jan 20, 10:59 AMNext Milestone, MITK
kalali removed a subtask for T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations: T28524: Refactor LabelSetImage and associated classes..
Thu, Jan 20, 10:59 AMMissing Info, MITK (v2022.04)
kalali added a subtask for T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation: T28524: Refactor LabelSetImage and associated classes..
Thu, Jan 20, 10:59 AMRequest for Discussion, MITK (v2022.04), Breaking Change
kalali added a subtask for T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation: T28135: [MultiLabel Segmentation] Utilities view cannot handle non-binary multilabel segmentations.
Thu, Jan 20, 10:58 AMRequest for Discussion, MITK (v2022.04), Breaking Change
kalali removed a subtask for T28524: Refactor LabelSetImage and associated classes.: T28135: [MultiLabel Segmentation] Utilities view cannot handle non-binary multilabel segmentations.
Thu, Jan 20, 10:58 AMNext Milestone, MITK
kalali removed a subtask for T27807: [MultiLabel Segmentation] Inspection of module and plugin: T28135: [MultiLabel Segmentation] Utilities view cannot handle non-binary multilabel segmentations.
Thu, Jan 20, 10:58 AMMITK (v2022.04)
kalali edited parent tasks for T28135: [MultiLabel Segmentation] Utilities view cannot handle non-binary multilabel segmentations, added: T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation; removed: T28524: Refactor LabelSetImage and associated classes., T27807: [MultiLabel Segmentation] Inspection of module and plugin.
Thu, Jan 20, 10:58 AMMITK (v2022.04)
kalali triaged T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation as High priority.
Thu, Jan 20, 10:56 AMRequest for Discussion, MITK (v2022.04), Breaking Change
floca edited projects for T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep, added: MITK, Next Milestone; removed MITK (v2022.04).
Thu, Jan 20, 10:32 AMNext Milestone, MITK
floca lowered the priority of T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels from High to Normal.
Thu, Jan 20, 10:30 AMMITK (v2022.04), Request for Discussion
floca edited projects for T28526: [Segmentation] Check tools (especially 3D tools) to correctly handle updating of LabelSetImage, added: MITK, Next Milestone; removed MITK (v2022.04).
Thu, Jan 20, 10:26 AMNext Milestone, MITK
floca edited projects for T28561: Refactor/Fix mitk::SegmentationInteractor::ChangeActiveLabel, added: MITK, Next Milestone; removed MITK (v2022.04).
Thu, Jan 20, 10:25 AMNext Milestone, MITK
floca added a project to T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations: Missing Info.

@isensee Could you give some information regarding the question (see comment above) . Thanks.

Thu, Jan 20, 10:24 AMMissing Info, MITK (v2022.04)
floca edited projects for T8140: Reimplement volume annotations for segmentations, added: MITK, Next Milestone; removed MITK (v2022.04).
Thu, Jan 20, 10:07 AMNext Milestone, MITK, Request for Discussion, Bugzilla
floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary".
Thu, Jan 20, 10:00 AMNext Milestone, MITK
floca added a subtask for T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary": T28524: Refactor LabelSetImage and associated classes..
Thu, Jan 20, 10:00 AMRequest for Discussion, Next Milestone, MITK
floca edited projects for T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary", added: MITK, Next Milestone, Request for Discussion; removed MITK (v2022.04).

We have to clarify the purposes/semantics of the properties (see above) in the future and which we want to keep.

Thu, Jan 20, 10:00 AMRequest for Discussion, Next Milestone, MITK
s669m updated the task description for T28929: Any design recommendation for below problem ??.
Thu, Jan 20, 9:53 AMRequest for Discussion, Kaapana (internal)
s669m updated the task description for T28929: Any design recommendation for below problem ??.
Thu, Jan 20, 9:51 AMRequest for Discussion, Kaapana (internal)
kalali updated subscribers of T28851: [Segmentation] Evaluate if we should add itkGrowCut as a tool.

@j762e This one could be important for you.

Thu, Jan 20, 9:46 AMMITK (v2022.04)