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kannberg claimed T28585: The MITK-Tutorial Step 9 missing inheritence.
Thu, Oct 21, 7:53 PM · MITK (v2021.10)
kannberg claimed T27260: Spacing points still remain in data manager after closing calibration view.
Thu, Oct 21, 7:53 PM · IGT, MITK
kannberg claimed T26675: Logging of absolute time stamps is not possible.
Thu, Oct 21, 7:52 PM · IGT, MITK
p212r committed rKAAPANAd3ae7ebaff3b: Remove duplicate image SLIM Viewer pod (authored by p212r).
Remove duplicate image SLIM Viewer pod
Thu, Oct 21, 7:01 PM
p212r committed rKAAPANA2b11fa7646d2: Move SLIM Viewer to store namespace (authored by p212r).
Move SLIM Viewer to store namespace
Thu, Oct 21, 7:01 PM
p212r committed rKAAPANA431353bb2c33: Integrated slim viewer in platform and frontend (authored by p212r).
Integrated slim viewer in platform and frontend
Thu, Oct 21, 7:01 PM
p212r committed rKAAPANA8816084c5f44: Update SLIM Viewer config to 0.4.2 format (authored by p212r).
Update SLIM Viewer config to 0.4.2 format
Thu, Oct 21, 7:01 PM
p212r committed rKAAPANAd11ac23cccff: Add slim viewer service (authored by p212r).
Add slim viewer service
Thu, Oct 21, 7:01 PM
floca added a project to T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels: Request for Discussion.

May be I do not understand the problem right. But the described behavior sounds correct to me. Flood fill should stop on another (not the label you clicked on (including background) label boundary. The only thing you could discuss is wether it is important if another label is locked or not.

Thu, Oct 21, 6:29 PM · Request for Discussion, MITK (v2021.10)
floca closed T28756: [Segmentation] 3-d picking tool crashes with dynamic segmentations as Resolved.
Thu, Oct 21, 6:19 PM · MITK (v2021.10)
floca committed rMITKe55a5d2f43c7: T28756 Fixed crash in PickingTool (authored by floca).
T28756 Fixed crash in PickingTool
Thu, Oct 21, 6:18 PM
floca committed rMITK067d90b1ce54: Fixed crash in PickingTool (authored by floca).
Fixed crash in PickingTool
Thu, Oct 21, 6:18 PM
kalali added a parent task for T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels: T27807: [MultiLabel Segmentation] Inspection of module and plugin.
Thu, Oct 21, 5:18 PM · Request for Discussion, MITK (v2021.10)
kalali added a subtask for T27807: [MultiLabel Segmentation] Inspection of module and plugin: T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels.
Thu, Oct 21, 5:18 PM · MITK (v2021.10)
kalali triaged T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels as High priority.
Thu, Oct 21, 5:17 PM · Request for Discussion, MITK (v2021.10)
floca added a revision to T28756: [Segmentation] 3-d picking tool crashes with dynamic segmentations: Unknown Object (Differential Revision).
Thu, Oct 21, 4:57 PM · MITK (v2021.10)
kalali triaged T28762: [Interaction] Remove deprecated / unused interaction files as Low priority.
Thu, Oct 21, 4:21 PM · MITK
floca added a comment to T28756: [Segmentation] 3-d picking tool crashes with dynamic segmentations.

Thanks for the feedback.

Thu, Oct 21, 3:54 PM · MITK (v2021.10)
kalali awarded T24368: Interaction scheme has different level of interaction a Yellow Medal token.
Thu, Oct 21, 3:51 PM · MITK
kalali closed T24356: Rework mouse mode switcher as Resolved.

Some related issues remain and can be found here:

Thu, Oct 21, 3:51 PM · MITK
kalali renamed T28741: [Interaction] Should auto-repeat mode be enabled in MITK and / or PACS mode? from Should auto-repeat mode be enabled in MITK and / or PACS mode? to [Interaction] Should auto-repeat mode be enabled in MITK and / or PACS mode?.
Thu, Oct 21, 3:48 PM · MITK
kalali renamed T28677: [Interaction] Disabling and reenabling PACS like interaction resets functionality but not UI from [PACS] Disabling and reenabling PACS like interaction resets functionality but not UI to [Interaction] Disabling and reenabling PACS like interaction resets functionality but not UI.
Thu, Oct 21, 3:45 PM · MITK
kalali renamed T28279: [Interaction] Improve image cropper cross hair interaction from Improve image cropper cross hair interaction to [Interaction] Improve image cropper cross hair interaction.
Thu, Oct 21, 3:44 PM · MITK
kalali updated subscribers of T28279: [Interaction] Improve image cropper cross hair interaction.

I stumbled upon this since @s434n and I worked a lot on the interaction in the last weeks.
We fixed something related to mouse-interaction in the image cropper plugin, see e7f6648cd685.
Before these changes were merged into develop (so e.g. using the latest Installer v2021.02) the user was able to set the cross hair while clicking inside the bounding box using the PACS mode.
So to reproduce what would happen using the second idea:

  • create a bounding box
  • enable PACS like mouse interaction (cross hair)
  • click inside the image and see how the cross hair is moved
  • drag the bounding box and see how the cross hair is moved as well (undesired)
  • this is even worse with other PACS interations, e.g. "Scroll"
Thu, Oct 21, 3:43 PM · MITK
s434n committed rMITK4499bf200131: Rename DisplayConfigPACS to DisplayConfigPACSBase (authored by s434n).
Rename DisplayConfigPACS to DisplayConfigPACSBase
Thu, Oct 21, 3:16 PM
s434n committed rMITK025c66b85fdb: Clear up interaction configs by splitting into smaller units (authored by s434n).
Clear up interaction configs by splitting into smaller units
Thu, Oct 21, 3:16 PM
s434n closed T24368: Interaction scheme has different level of interaction, a subtask of T24356: Rework mouse mode switcher, as Resolved.
Thu, Oct 21, 3:16 PM · MITK
s434n closed T24368: Interaction scheme has different level of interaction as Resolved by committing rMITK025c66b85fdb: Clear up interaction configs by splitting into smaller units.
Thu, Oct 21, 3:16 PM · MITK
s434n committed rMITKf193f115b311: split interaction configs into common units (authored by s434n).
split interaction configs into common units
Thu, Oct 21, 3:16 PM
s434n committed rMITK320783485d4c: fix crosshair movement in rotation mode (authored by s434n).
fix crosshair movement in rotation mode
Thu, Oct 21, 3:16 PM
zhaoyoujun created T28761: SurfaceToImageFilter Bug.
Thu, Oct 21, 2:27 PM · Pull Request, MITK
kislinsk added a comment to T28756: [Segmentation] 3-d picking tool crashes with dynamic segmentations.

Found the problem. It is not a error in the picking tool.

It is in

void mitk::LabelSetImage::ClearBuffer()

Because AccessByItk (which is used there) by default only supports 2D and 3D. -> Exception when trying to reset dynamic LabelSetImages.

So far I see the following solutions:

  1. Add 4D as a CMake default (but would impact a lot of code...)
  2. Add in clear buffer a check if instance is 4D and if so explizitly call it for 4D (in other cases use AccessByItk as we did so far.

@kislinsk Do you see an other option? Which one would you choose?

Thu, Oct 21, 10:46 AM · MITK (v2021.10)
s669m updated the task description for T28759: Architecture : better solution for separating user workflow from system workflow (spinning up new airflow for every jobs).
Thu, Oct 21, 9:56 AM · Kaapana (internal)
s669m added a comment to T28759: Architecture : better solution for separating user workflow from system workflow (spinning up new airflow for every jobs).
Thu, Oct 21, 9:55 AM · Kaapana (internal)
s669m moved T28754: Linking Kaapana website contact form to DKFZ contact form ? from Discussion to In Progress on the Kaapana (internal) board.
Thu, Oct 21, 9:51 AM · Kaapana (internal)
s669m triaged T28759: Architecture : better solution for separating user workflow from system workflow (spinning up new airflow for every jobs) as Normal priority.
Thu, Oct 21, 9:49 AM · Kaapana (internal)

Wed, Oct 20

isensee added a comment to T28758: Screenshot colors are not identical to 3D view.

strange... the color in here is displayed correctly. It's then my png viewer that must be messing things up...

Wed, Oct 20, 5:16 PM · MITK
isensee closed T28758: Screenshot colors are not identical to 3D view as Resolved.
Wed, Oct 20, 5:16 PM · MITK
isensee created T28758: Screenshot colors are not identical to 3D view.
Wed, Oct 20, 5:15 PM · MITK
adler added a member for CAMI: amiiney.
Wed, Oct 20, 3:45 PM
floca added a comment to T28756: [Segmentation] 3-d picking tool crashes with dynamic segmentations.

Found the problem. It is not a error in the picking tool.

Wed, Oct 20, 1:44 PM · MITK (v2021.10)
k688h committed rKAAPANA1ddbd5dff5c9: Increase disk size of platform deployment instance (authored by k688h).
Increase disk size of platform deployment instance
Wed, Oct 20, 11:16 AM
floca added a project to T28755: [Segmentation] Labels can only be Confirmed once in Segmentation tools after Preview: Request for Discussion.

I raised it back to normal, as it becomes very relevant for tools like nnUnet. So we should consider it for next spring release when we make the planning in a month.

Wed, Oct 20, 9:45 AM · Request for Discussion, MITK
floca renamed T28755: [Segmentation] Labels can only be Confirmed once in Segmentation tools after Preview from Labels can only be Confirmed once in Segmentation tools after Preview to [Segmentation] Labels can only be Confirmed once in Segmentation tools after Preview.
Wed, Oct 20, 9:44 AM · Request for Discussion, MITK
kahl added a comment to T28464: [Segmentation] New Add/Remove tool.

Pushed new branch to rMITK MITK: feature/T28464-new-add-tool.

Wed, Oct 20, 9:36 AM · Cleared, MITK (v2021.10)
kislinsk edited the content of 2021 Week 42 (Late October).
Wed, Oct 20, 8:14 AM
makr added a comment to T28089: [CEST] Error loading custom data due to alleged spacing of 0.

it still is very relevant and I have a master student working on the project right now. Is there a chance to contact you directly via Email?

Wed, Oct 20, 8:10 AM · Missing Info, Restricted Project, MITK
kislinsk moved T28756: [Segmentation] 3-d picking tool crashes with dynamic segmentations from Backlog to Cycle on the MITK (v2021.10) board.
Wed, Oct 20, 7:48 AM · MITK (v2021.10)
kislinsk triaged T28756: [Segmentation] 3-d picking tool crashes with dynamic segmentations as Unbreak Now! priority.
Wed, Oct 20, 7:48 AM · MITK (v2021.10)
kislinsk triaged T28755: [Segmentation] Labels can only be Confirmed once in Segmentation tools after Preview as Wishlist priority.
Wed, Oct 20, 7:01 AM · Request for Discussion, MITK

Tue, Oct 19

a178n added a comment to T28755: [Segmentation] Labels can only be Confirmed once in Segmentation tools after Preview.

This issue was mentioned on 18.Oct.2021 by Fabian as his comment on the upcoming nnUNet tool.
This issue could be a duplicate. If so, please mark it as such.

Tue, Oct 19, 2:23 PM · Request for Discussion, MITK
a178n created T28755: [Segmentation] Labels can only be Confirmed once in Segmentation tools after Preview.
Tue, Oct 19, 2:21 PM · Request for Discussion, MITK
michaelbraco updated michaelbraco.
Tue, Oct 19, 12:25 PM
michaelbraco updated michaelbraco.
Tue, Oct 19, 12:25 PM
s669m triaged T28754: Linking Kaapana website contact form to DKFZ contact form ? as Low priority.
Tue, Oct 19, 11:40 AM · Kaapana (internal)

Mon, Oct 18

s349i added a comment to T28176: [Segmentation] Inspection of module and plugin.

Testing if both Segmentation Utilities and Multilabel Segmentation Utilities have the same functionality:

  • For 3d data, a surface (or surfaces, depending on the case) was created by doing a 3d-interpolation of the masks in different 2d views. Data Used: MITK-Data/brain.nrrd.
Mon, Oct 18, 4:00 PM · MITK (v2021.10)
kalali triaged T28752: [Segmentation] Move Segmentation utilities widgets to SegmentationUI module as Normal priority.
Mon, Oct 18, 12:48 PM · Next Milestone, MITK
schererj closed T28582: How important the CNI configuration in a single node Microk8s cluster with Containerd as Resolved.
Mon, Oct 18, 12:29 PM · Request for Discussion, Kaapana (internal)
schererj closed T28599: Nested-V pods accessibility of GPU which is running on Kaapana Powered Server as Resolved.
Mon, Oct 18, 12:29 PM · Request for Discussion, Kaapana (internal)
schererj closed T28653: website feedbacks - comments from Ralf as Resolved.
Mon, Oct 18, 12:29 PM · Request for Discussion, Kaapana (internal)
kalali added a project to T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation: Breaking Change.
Mon, Oct 18, 12:12 PM · Breaking Change, Next Milestone, MITK
kislinsk closed T28750: 2021 Week 42 (Late October) as Resolved.
Mon, Oct 18, 11:57 AM · MITK
kislinsk edited the content of Changelog.
Mon, Oct 18, 11:56 AM · MITK
kislinsk added a comment to T28750: 2021 Week 42 (Late October).

Deleted branch from rMITK MITK: release/T28750-2021-Week-42.

Mon, Oct 18, 11:56 AM · MITK
kislinsk committed rMITK9e0e53e22e44: Merge branch 'master' into develop (authored by kislinsk).
Merge branch 'master' into develop
Mon, Oct 18, 11:55 AM
kislinsk committed rMITK7e60e56bab60: 2021 Week 42 (Late October) (authored by kislinsk).
2021 Week 42 (Late October)
Mon, Oct 18, 11:54 AM
kislinsk edited the content of 2021 Week 42 (Late October).
Mon, Oct 18, 11:49 AM
kalali edited projects for T26492: [mxn multi widget] Send active render window, added: MITK (v2021.10), Breaking Change; removed MITK.
Mon, Oct 18, 11:04 AM · Breaking Change, MITK (v2021.10)
kislinsk edited the content of 2021 Week 39 (Very Early October).
Mon, Oct 18, 10:56 AM
kalali edited projects for T26486: PACS mouse mode does not allow scrolling with mouse wheel, added: MITK (v2021.10), Breaking Change; removed MITK.
Mon, Oct 18, 10:17 AM · Breaking Change, MITK (v2021.10)
j162k renamed T28751: code-server container fails to build from code-server fails on container build to code-server container fails to build.
Mon, Oct 18, 9:57 AM · Kaapana (internal)
j162k created T28751: code-server container fails to build.
Mon, Oct 18, 9:57 AM · Kaapana (internal)
kleina committed rMITK70c956ac9b1f: Add segment that visually connects the current mouse position with the contour… (authored by kleina).
Add segment that visually connects the current mouse position with the contour…
Mon, Oct 18, 9:48 AM
kleina committed rMITKf00e1392bc00: Increase "hit box" for contour points. (authored by kleina).
Increase "hit box" for contour points.
Mon, Oct 18, 9:48 AM
kleina committed rMITKc0e8a4f6930d: Always close the contour on double click , not just if start point is clicked. (authored by kleina).
Always close the contour on double click , not just if start point is clicked.
Mon, Oct 18, 9:48 AM
kleina committed rMITKf5e005e0f53b: renamed contour (authored by kleina).
renamed contour
Mon, Oct 18, 9:48 AM
kleina committed rMITK2961a363ab60: Add constant for vertex eps. (authored by kleina).
Add constant for vertex eps.
Mon, Oct 18, 9:48 AM
kleina committed rMITK6da0cebf157f: Check plane geometry during drawing of contours to make sure (authored by kleina).
Check plane geometry during drawing of contours to make sure
Mon, Oct 18, 9:48 AM
André Klein <kleina@ad.dkfz-heidelberg.de> committed rMITK2754c6f69089: Added method to get control vertex. (authored by André Klein <kleina@ad.dkfz-heidelberg.de>).
Added method to get control vertex.
Mon, Oct 18, 9:48 AM
André Klein <kleina@ad.dkfz-heidelberg.de> committed rMITKb77ed99edd1e: Quick and dirty version to disable cost fucntion. (authored by André Klein <kleina@ad.dkfz-heidelberg.de>).
Quick and dirty version to disable cost fucntion.
Mon, Oct 18, 9:48 AM
André Klein <kleina@ad.dkfz-heidelberg.de> committed rMITK601626d86db9: Structured selection of vertex on click. (authored by André Klein <kleina@ad.dkfz-heidelberg.de>).
Structured selection of vertex on click.
Mon, Oct 18, 9:48 AM
André Klein <kleina@ad.dkfz-heidelberg.de> committed rMITK2a67f8b6662b: Updated comments (authored by André Klein <kleina@ad.dkfz-heidelberg.de>).
Updated comments
Mon, Oct 18, 9:48 AM
kahl committed rMITKbc4a6076f49a: avoid vertex to be added outside contour (authored by kahl).
avoid vertex to be added outside contour
Mon, Oct 18, 9:48 AM
André Klein <kleina@ad.dkfz-heidelberg.de> committed rMITK131b13111f16: Changed mitk::ContourElement::BruteForceGetVertexAt (authored by André Klein <kleina@ad.dkfz-heidelberg.de>).
Changed mitk::ContourElement::BruteForceGetVertexAt
Mon, Oct 18, 9:48 AM
André Klein <kleina@ad.dkfz-heidelberg.de> committed rMITK6532dcd5d797: Added filter to closure contour. (authored by André Klein <kleina@ad.dkfz-heidelberg.de>).
Added filter to closure contour.
Mon, Oct 18, 9:48 AM
kahl committed rMITK699f9b84b3d3: refactor get vertex and split contour (authored by kahl).
refactor get vertex and split contour
Mon, Oct 18, 9:48 AM
kahl committed rMITK010f7051103f: implement edge cases for moving points (authored by kahl).
implement edge cases for moving points
Mon, Oct 18, 9:48 AM
kahl committed rMITK2809ba702298: removed unused variables (authored by kahl).
removed unused variables
Mon, Oct 18, 9:48 AM
kahl committed rMITKc2a28ece5d32: deleted old implementation of SplitContourFromSelectedVertex and added comments (authored by kahl).
deleted old implementation of SplitContourFromSelectedVertex and added comments
Mon, Oct 18, 9:48 AM
kahl committed rMITK41981c2e30b1: Merge branch 'develop' into feature/T28607-live-wire-improvements (authored by kahl).
Merge branch 'develop' into feature/T28607-live-wire-improvements
Mon, Oct 18, 9:48 AM
kahl committed rMITK4bb9a540550f: fix initialization and return statement in itkShortestPathImageFilter (authored by kahl).
fix initialization and return statement in itkShortestPathImageFilter
Mon, Oct 18, 9:48 AM
kahl committed rMITK85e2645d4d9b: refactorings from review (authored by kahl).
refactorings from review
Mon, Oct 18, 9:48 AM
André Klein <kleina@ad.dkfz-heidelberg.de> committed rMITKe960930c4c36: LiveWire tool issues and improvements (authored by kahl).
LiveWire tool issues and improvements
Mon, Oct 18, 9:48 AM
kislinsk added a comment to T28750: 2021 Week 42 (Late October).

Pushed new branch to rMITK MITK: release/T28750-2021-Week-42.

Mon, Oct 18, 9:47 AM · MITK
kislinsk triaged T28750: 2021 Week 42 (Late October) as Normal priority.
Mon, Oct 18, 9:46 AM · MITK
kislinsk renamed 2021 Week 42 (Late October) from 2021.42 to 2021 Week 42 (Late October).
Mon, Oct 18, 9:45 AM
kislinsk created an object: 2021 Week 42 (Late October).
Mon, Oct 18, 9:45 AM
kleina added a comment to T28748: [Segmentation] New Add tool: Behavior for modifying painted regions.

I guess in GIMP the behavior is somewhat similar to your second suggestion. As you are not able to set additional points, it is a "restricted region". You can still modify existing points. This is what the tool looks like in GIMP if you move one of the existing points.

Mon, Oct 18, 9:40 AM · Request for Discussion, MITK
kislinsk closed T28749: libxdamage can be a runtime dependence on Ubuntu 20.04 as Resolved.
Mon, Oct 18, 9:40 AM · MITK (v2021.10)
kislinsk added a comment to T28749: libxdamage can be a runtime dependence on Ubuntu 20.04.

Deleted branch from rMITK MITK: bugfix/T28749-libxdamage.

Mon, Oct 18, 9:40 AM · MITK (v2021.10)