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Fri, Feb 15

floca triaged T26055: Add superbuild configuration option "with ModelFit" as Normal priority.
Fri, Feb 15, 11:42 PM · Restricted Project, MITK
franza added a comment to T23624: Connection to Epiphan frame grabber via OpenCV is buggy.

Cool! Thanks for taking care for this. I'm looking forward to use the Epiphan grabber directly again (current workaround: PLUS Server and OpenIGTLink). If you need any help please let me know. There also is a nice chat support on the Epiphan page.

Fri, Feb 15, 11:09 PM · IGT, Restricted Project, MITK
milano added a comment to T26002: Unhandled exception in mitkNDITrackingDevice::ThreadStartTracking.

Hi. I completely agree with your comment. I just implemented a handler to avoid a call to terminate() in my application, but the implementation is incomplete. The main problem, as you commented,, is how are we going to let know the main thread that an exception occurred in the tracking thread. There are several possibilities (it would be great to have Qt signals mechanism here), but I think that we have two main options:

Fri, Feb 15, 10:23 PM · Pull Request, MITK
aguilera committed rMITK4f00ce2f6eb9: start to include epiphan sdk (authored by aguilera).
start to include epiphan sdk
Fri, Feb 15, 9:09 PM
aguilera added a comment to T23624: Connection to Epiphan frame grabber via OpenCV is buggy.

Pushed new branch T23624-ConnectionToEpiphanFrameGrabberViaOpenCVIsBuggy.

Fri, Feb 15, 9:09 PM · IGT, Restricted Project, MITK
seitela added a comment to T23624: Connection to Epiphan frame grabber via OpenCV is buggy.

Thanks for looking into this. Keep in mind that we should still keep the current implementation to grab images as it allows to grab far more than only from the Epiphan frame grabber. Once the feasibility of using the SDK is shown, we should think of integrating it as a separate video source that is dependent on the specific Epiphan SDK.

Fri, Feb 15, 4:57 PM · IGT, Restricted Project, MITK
mittmann committed rMITK9741118aedd0: Renamed the EchoTrack plugin to UltrasoundTrackingNavigation (abbreviation… (authored by mittmann).
Renamed the EchoTrack plugin to UltrasoundTrackingNavigation (abbreviation…
Fri, Feb 15, 4:40 PM
mindrocf updated subscribers of T23624: Connection to Epiphan frame grabber via OpenCV is buggy.

We digged into the Epiphan SDK and found the V2U_GrabFrame2 structure which is returned by the GrabFrame method. We will try to convert this structure to an mitk Image using also the ITKConvertIplImageBuffer logic. Afterwards, we will try to replace the OpenCV VideoCapture method by using the Epiphan SDK in MITK directly. @aguilera

Fri, Feb 15, 4:13 PM · IGT, Restricted Project, MITK
steint added a task to rMITKba9fdb45768a: Add stacked area chart. Fixes T25859.: T25859: [chart] implement stacked chart.
Fri, Feb 15, 3:23 PM
steint committed rMITKfcc0d997a8c3: Merge branch 'T25859-stacked-area-chart' Fixes T25859. (authored by steint).
Merge branch 'T25859-stacked-area-chart' Fixes T25859.
Fri, Feb 15, 3:23 PM
steint added a commit to T25859: [chart] implement stacked chart: rMITKba9fdb45768a: Add stacked area chart. Fixes T25859..
Fri, Feb 15, 3:23 PM · MITK
steint closed T25859: [chart] implement stacked chart as Resolved by committing rMITKfcc0d997a8c3: Merge branch 'T25859-stacked-area-chart' Fixes T25859..
Fri, Feb 15, 3:23 PM · MITK
steint committed rMITK8cd72e0ec7d1: Add visibility setting of data points (authored by steint).
Add visibility setting of data points
Fri, Feb 15, 3:20 PM
steint committed rMITKba9fdb45768a: Add stacked area chart. Fixes T25859. (authored by steint).
Add stacked area chart. Fixes T25859.
Fri, Feb 15, 2:48 PM
steint added a comment to T25859: [chart] implement stacked chart.

Pushed new branch T25859-stacked-area-chart.

Fri, Feb 15, 2:48 PM · MITK
seitela added a comment to T26002: Unhandled exception in mitkNDITrackingDevice::ThreadStartTracking.

Thanks for this contributions! It seems there are some open issues regarding exception handling in the NDITrackingDevice.

Fri, Feb 15, 2:00 PM · Pull Request, MITK
groehl committed rMITKa6a5b11e8f7c: parameter changes to do specific simulation experiments (authored by groehl).
parameter changes to do specific simulation experiments
Fri, Feb 15, 1:36 PM
floca added a comment to T19999: DICOM CGet and CMove don't work correctly.

OK, then there is still an error with test 3.

Fri, Feb 15, 1:18 PM · Restricted Project, Restricted Project, MITK
kahl committed rMITKc51ffba2c14c: Client Get, Put, Post implemented (authored by kahl).
Client Get, Put, Post implemented
Fri, Feb 15, 1:09 PM
steint added a task to rMITK6b6651e57a14: Support chart types spline, area, area-spline and scatter Fixes T25870.: T25870: [chart] Implement the chart types spline, area, area_spline and scatter .
Fri, Feb 15, 1:00 PM
steint closed T25870: [chart] Implement the chart types spline, area, area_spline and scatter as Resolved by committing rMITK6b6651e57a14: Support chart types spline, area, area-spline and scatter Fixes T25870..
Fri, Feb 15, 1:00 PM · Restricted Project, MITK
steint closed T25870: [chart] Implement the chart types spline, area, area_spline and scatter , a subtask of T23104: Deprecate QmitkPlotWidget, as Resolved.
Fri, Feb 15, 1:00 PM · Restricted Project, MITK
steint committed rMITKc2a9fd80050c: Merge branch 'T25870-chart-types' (authored by steint).
Merge branch 'T25870-chart-types'
Fri, Feb 15, 1:00 PM
steint committed rMITK6b6651e57a14: Support chart types spline, area, area-spline and scatter Fixes T25870. (authored by steint).
Support chart types spline, area, area-spline and scatter Fixes T25870.
Fri, Feb 15, 12:58 PM
steint added a comment to T25870: [chart] Implement the chart types spline, area, area_spline and scatter .

Pushed new branch T25870-chart-types.

Fri, Feb 15, 12:58 PM · Restricted Project, MITK
seitela closed T26001: The return value in mitkSerialCommunication::Send is inconsistent under Microsoft Windows Platforms as Resolved.

Merged pull request as discussed on https://sourceforge.net/p/mitk/mailman/message/36525424/

Fri, Feb 15, 12:23 PM · Pull Request, MITK
seitela committed rMITKd2723626c4d5: Merge branch 'T26001_Replaced_GetLastError_for_ERROR_VALUE_in_Windows' (authored by seitela).
Merge branch 'T26001_Replaced_GetLastError_for_ERROR_VALUE_in_Windows'
Fri, Feb 15, 12:21 PM
milano committed rMITKe6a66e3b2490: Replaced GetLastError Win32 API calls by ERROR_VALUE, to avoid inconsitent… (authored by milano).
Replaced GetLastError Win32 API calls by ERROR_VALUE, to avoid inconsitent…
Fri, Feb 15, 12:20 PM
seitela added a comment to T26001: The return value in mitkSerialCommunication::Send is inconsistent under Microsoft Windows Platforms.

Pushed new branch T26001-Replaced_GetLastError_for_ERROR_VALUE_in_Windows.

Fri, Feb 15, 12:20 PM · Pull Request, MITK
gaoh added a comment to T19999: DICOM CGet and CMove don't work correctly.

Point 1 and 2 are working.
With point 3: not all the series are downloaded: I retrieved all 5 series of a patient, but only got 2 series. Separately retrieving of each series was fine.

Fri, Feb 15, 12:18 PM · Restricted Project, Restricted Project, MITK
steint added a subtask for T23104: Deprecate QmitkPlotWidget: Unknown Object (Maniphest Task).
Fri, Feb 15, 10:33 AM · Restricted Project, MITK
steint added a task to rMITKd083ff01727d: Add chart title to example plugin. Fixes T25972.: T25972: Add title to plugin.
Fri, Feb 15, 10:23 AM
steint committed rMITK7b91d3623a02: Merge branch 'T25972-chart-title' (authored by steint).
Merge branch 'T25972-chart-title'
Fri, Feb 15, 10:23 AM
steint closed T25972: Add title to plugin as Resolved by committing rMITKd083ff01727d: Add chart title to example plugin. Fixes T25972..
Fri, Feb 15, 10:23 AM · MITK
steint closed T25972: Add title to plugin, a subtask of T25683: Chart Example Plugin, as Resolved.
Fri, Feb 15, 10:23 AM · MITK
steint committed rMITKd083ff01727d: Add chart title to example plugin. Fixes T25972. (authored by steint).
Add chart title to example plugin. Fixes T25972.
Fri, Feb 15, 10:18 AM
steint added a comment to T25972: Add title to plugin.

Pushed new branch T25972-chart-title.

Fri, Feb 15, 10:18 AM · MITK
eisenman added a project to T24754: Volume Visualization crashes with some CT images: Restricted Project.
Fri, Feb 15, 10:02 AM · Restricted Project, MITK
neher closed T26043: [MITK Diffusion] Fiberfox test as Resolved.
Fri, Feb 15, 9:39 AM · MITK
neher committed rMITK81ed939b0ef6: Merge branch 'T26043-FiberfoxTest' (authored by neher).
Merge branch 'T26043-FiberfoxTest'
Fri, Feb 15, 8:52 AM
neher committed rMITK0bb00a4a3179: Using itk random generator for platform independent results (authored by neher).
Using itk random generator for platform independent results
Fri, Feb 15, 8:51 AM
neher committed rMD4b3a8a23b2a7: Fiberfox data (authored by neher).
Fiberfox data
Fri, Feb 15, 8:50 AM
neher added a comment to T26043: [MITK Diffusion] Fiberfox test.

remove rand from DIffusion module. Use itk mersenne twister for inter platform consistency

Fri, Feb 15, 8:24 AM · MITK

Thu, Feb 14

neher closed T26046: Screenshot maker should enbale image series of all components as Resolved.
Thu, Feb 14, 5:18 PM · MITK
mittmann committed rMITKc6acd5969c75: Merge remote-tracking branch 'remotes/origin/T25522-FiducialBased-CT-to-US… (authored by mittmann).
Merge remote-tracking branch 'remotes/origin/T25522-FiducialBased-CT-to-US…
Thu, Feb 14, 4:53 PM
mittmann committed rMITK65f16db447df: Cleaning up the code part I (authored by mittmann).
Cleaning up the code part I
Thu, Feb 14, 4:43 PM
neher committed rMITKe94b9cfbd9c2: Merge branch 'T26046-MultiCompScreenshot' (authored by neher).
Merge branch 'T26046-MultiCompScreenshot'
Thu, Feb 14, 4:42 PM
neher committed rMITK72f97972b60d: Ignore invisible nodes (authored by neher).
Ignore invisible nodes
Thu, Feb 14, 4:41 PM
neher committed rMITK754192873559: Possible now (authored by neher).
Possible now
Thu, Feb 14, 4:12 PM
neher added a comment to T26046: Screenshot maker should enbale image series of all components.

Pushed new branch T26046-MultiCompScreenshot.

Thu, Feb 14, 4:12 PM · MITK
neher triaged T26046: Screenshot maker should enbale image series of all components as Wishlist priority.
Thu, Feb 14, 4:11 PM · MITK
neher committed rMITKe736f5829ca3: Merge branch 'T26043-FiberfoxTest' (authored by neher).
Merge branch 'T26043-FiberfoxTest'
Thu, Feb 14, 2:45 PM
neher committed rMITK87a5afd4b97b: Increasing tolerance. Probably floating point rounding issue. (authored by neher).
Increasing tolerance. Probably floating point rounding issue.
Thu, Feb 14, 2:44 PM
s635r moved T25955: Unified Interface for solver output from Backlog to In Progress on the Hyppopy board.
Thu, Feb 14, 2:25 PM · Hyppopy
s635r created T26044: unify hyperparameter typed output.
Thu, Feb 14, 2:24 PM · Hyppopy
neher committed rMITK5a773c7a8338: Merge branch 'T26043-FiberfoxTest' (authored by neher).
Merge branch 'T26043-FiberfoxTest'
Thu, Feb 14, 2:09 PM
neher committed rMITK0420601b22b4: Limit openmp threads to 1 (authored by neher).
Limit openmp threads to 1
Thu, Feb 14, 2:08 PM
neher added a comment to T26043: [MITK Diffusion] Fiberfox test.

Pushed new branch T26043-FiberfoxTest.

Thu, Feb 14, 2:07 PM · MITK
neher triaged T26043: [MITK Diffusion] Fiberfox test as Normal priority.
Thu, Feb 14, 2:06 PM · MITK
mittmann added a comment to T25522: Fiducial based CT registration.

Pushed new branch T25522-MasterIntegrationBranch-14-02-2019.

Thu, Feb 14, 1:29 PM · Restricted Project, MITK, IGT
s635r added a member for Hyppopy: rasheed.
Thu, Feb 14, 12:09 PM
neher closed T26042: [MITK Diffusion] Fiberfox fox seed should also fix in parameter loading as Resolved.
Thu, Feb 14, 11:50 AM · MITK
neher committed rMITK459d94f16568: Merge branch 'T26042-FiberfoxFixSeed' (authored by neher).
Merge branch 'T26042-FiberfoxFixSeed'
Thu, Feb 14, 11:48 AM
neher committed rMITK0ba68a6e380c: Fix seed and add test (authored by neher).
Fix seed and add test
Thu, Feb 14, 11:47 AM
neher added a comment to T26042: [MITK Diffusion] Fiberfox fox seed should also fix in parameter loading.

Pushed new branch T26042-FiberfoxFixSeed.

Thu, Feb 14, 11:47 AM · MITK
neher triaged T26042: [MITK Diffusion] Fiberfox fox seed should also fix in parameter loading as Normal priority.
Thu, Feb 14, 11:45 AM · MITK
neher committed rMDb5ebd52890fe: Add new fiberfox test data (authored by neher).
Add new fiberfox test data
Thu, Feb 14, 11:44 AM
s635r added a member for Hyppopy: kleina.
Thu, Feb 14, 10:19 AM

Wed, Feb 13

gaoh added a comment to T19999: DICOM CGet and CMove don't work correctly.

yes I will try, I already tried Q/R with the current installer and the wdb and it worked.

Wed, Feb 13, 5:52 PM · Restricted Project, Restricted Project, MITK
floca lowered the priority of T19999: DICOM CGet and CMove don't work correctly from High to Low.

@reicht: Thanks
@gaoh : Could you (not of high priority; so within the next month, or at a community day) check if the problem still exists with a actual installer. If you need an installer with DICOM editor, i can provide one.

Wed, Feb 13, 5:45 PM · Restricted Project, Restricted Project, MITK
reicht added a comment to T19999: DICOM CGet and CMove don't work correctly.

OsiriX / Horos instance is online:

Wed, Feb 13, 5:31 PM · Restricted Project, Restricted Project, MITK
hentsch triaged T26037: Make use of custom statistic values possible as Normal priority.
Wed, Feb 13, 3:59 PM · MITK
kalali committed rMITKe31dfbdb56da: Fix wrong lesion presence mapping (authored by kalali).
Fix wrong lesion presence mapping
Wed, Feb 13, 3:48 PM
kalali committed rMITK4ee1f95d1633: Add try-catch for exception handling (authored by kalali).
Add try-catch for exception handling
Wed, Feb 13, 3:47 PM
kalali committed rMITK23394e21161d: Refactor warning message box (authored by kalali).
Refactor warning message box
Wed, Feb 13, 3:47 PM
kalali committed rMITKb7e8e10ffe4b: Change DICOM tag property name retrieval (authored by kalali).
Change DICOM tag property name retrieval
Wed, Feb 13, 3:47 PM
kalali added a project to T24810: Display interaction synchronization with world coordinates: Restricted Project.
Wed, Feb 13, 2:22 PM · Restricted Project, MITK
kalali added a project to T24672: Create decoration manager for render windows widgets: Restricted Project.
Wed, Feb 13, 2:22 PM · Restricted Project, MITK
kalali added a project to T24161: Common interface for Custom-/Std-Multi widget (editor): Restricted Project.
Wed, Feb 13, 2:22 PM · Restricted Project, MITK
kalali added a project to T24216: Synchronization of individual render windows: camera position: Restricted Project.
Wed, Feb 13, 2:22 PM · Restricted Project, MITK
kalali placed T25604: New concept for switching between different render windows up for grabs.
Wed, Feb 13, 2:20 PM · Restricted Project, MITK
kalali placed T25601: Modernize render window manager up for grabs.
Wed, Feb 13, 2:20 PM · Restricted Project, MITK
kalali placed T24810: Display interaction synchronization with world coordinates up for grabs.
Wed, Feb 13, 2:19 PM · Restricted Project, MITK
kalali placed T24672: Create decoration manager for render windows widgets up for grabs.
Wed, Feb 13, 2:19 PM · Restricted Project, MITK
kalali placed T24161: Common interface for Custom-/Std-Multi widget (editor) up for grabs.
Wed, Feb 13, 2:18 PM · Restricted Project, MITK
kalali placed T24216: Synchronization of individual render windows: camera position up for grabs.
Wed, Feb 13, 2:18 PM · Restricted Project, MITK
s635r moved T25990: Extend Parameter Interface with SettingsParticles from In Progress to Done on the Hyppopy board.
Wed, Feb 13, 1:20 PM · Hyppopy
s635r moved T25955: Unified Interface for solver output from In Progress to Backlog on the Hyppopy board.
Wed, Feb 13, 1:20 PM · Hyppopy
hentsch removed a parent task for T25833: Leak/Debugbreak when closing workbench related to MitkChart: Unknown Object (Maniphest Task).
Wed, Feb 13, 12:10 PM · Restricted Project, MITK
hentsch renamed T25833: Leak/Debugbreak when closing workbench related to MitkChart from Leak/Debugbreak when closing workbench after opening new image statistics plugin to Leak/Debugbreak when closing workbench related to MitkChart.
Wed, Feb 13, 12:10 PM · Restricted Project, MITK
hentsch lowered the priority of T25833: Leak/Debugbreak when closing workbench related to MitkChart from Normal to Low.

Is not fixed with Qt 5.12.
It does only appear in Debug mode
Also, it also appears without building the image statistics plugin (measurement toolbox). Hence, the problem is probably originated in MitkChart (which uses QWebEngineWidget):

Wed, Feb 13, 12:10 PM · Restricted Project, MITK
neher closed T26031: [MITK Diffusion] Not all spikes are generated as Resolved.
Wed, Feb 13, 11:27 AM · MITK
neher committed rMITKd265101b5e71: Merge branch 'T26031-FiberfoxSpikes' (authored by neher).
Merge branch 'T26031-FiberfoxSpikes'
Wed, Feb 13, 11:22 AM
neher closed T26024: [MITK Diffusion] Head motion with volume fraction maps causes holes as Resolved.
Wed, Feb 13, 11:21 AM · MITK
neher committed rMITK8d044b824b08: Switch to list and skip sorting (authored by neher).
Switch to list and skip sorting
Wed, Feb 13, 11:21 AM
neher added a comment to T26031: [MITK Diffusion] Not all spikes are generated.

Pushed new branch T26031-FiberfoxSpikes.

Wed, Feb 13, 11:20 AM · MITK
neher added a comment to T26031: [MITK Diffusion] Not all spikes are generated.

caused by openmp parallelization

Wed, Feb 13, 10:49 AM · MITK
floca moved T22780: Possibility to filter reader services when using IOutils from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Wed, Feb 13, 10:49 AM · Restricted Project, MITK
floca moved T25704: Difference between GUI and expected values MitkImageStatisticsCalculatorTests from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Wed, Feb 13, 10:46 AM · Restricted Project, MITK
hentsch added a task to rMITKce2297c86dfb: resolved T25856: T25856: [image statistics plugin] Histogram and Line profile are shown together in Caching case.
Wed, Feb 13, 8:58 AM