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floca added a revision to T28148: Fix/Refactor ContourElement: Restricted Differential Revision.
Sat, Jan 16, 8:48 PM · MITK (2020)

Fri, Jan 15

schererj committed rKAAPANA8aa5ff8d40e5: adjustments for bin2dcm file extraction (authored by schererj).
adjustments for bin2dcm file extraction
Fri, Jan 15, 12:43 PM
kislinsk added a comment to T28159: Oficially support MITK using system Qt.

I understand. :-) Just wanted to give you more options to think about as it is probably only a temporal solution. Sooner or later (currently read "later"), our minimum version requirements won't match again with the OS-provided Qt version. So we cannot run away from it forever I guess. :D

Fri, Jan 15, 12:40 PM · CI, Kaapana (internal), Request for Discussion, MITK
gaoh added a comment to T28159: Oficially support MITK using system Qt.

yes exactly, the problem with the scripted version, ist still, that it is necessary to provide credentials. That was fine, as long we were the only ones creating the containers.
The version of @nolden downloading the packages in ubuntu allows others to just build the container, without having to provide credentials at all.

Fri, Jan 15, 12:35 PM · CI, Kaapana (internal), Request for Discussion, MITK
nolden added a comment to T28159: Oficially support MITK using system Qt.

Thank. New command-line interface looks nice, but the challenge is where to put the credentials, especially if you want to put the script open source like in the Kaapana dockerfiles.

Fri, Jan 15, 12:14 PM · CI, Kaapana (internal), Request for Discussion, MITK
kislinsk renamed T27693: Packaging Python does not work/is not implemented from Cannot start nightly workbench on a clean Ubuntu 18/20 to Packaging Python does not work/is not implemented.
Fri, Jan 15, 12:09 PM · MITK
kislinsk merged T27894: Linux nightly installer doesn't start on Fedora into T27693: Packaging Python does not work/is not implemented.
Fri, Jan 15, 12:09 PM · MITK
kislinsk merged task T27894: Linux nightly installer doesn't start on Fedora into T27693: Packaging Python does not work/is not implemented.
Fri, Jan 15, 12:09 PM · MITK (2020)
kislinsk edited projects for T27196: Rewrite packaging of MITK, added: Next Milestone, MITK; removed MITK (2020).
Fri, Jan 15, 12:07 PM · MITK, Next Milestone, Cleared
schererj committed rKAAPANA17342b25d22f: bin2dcm changed filename dcm-tag into ImageComments (authored by schererj).
bin2dcm changed filename dcm-tag into ImageComments
Fri, Jan 15, 11:47 AM
schererj committed rKAAPANAe71ea7f80de6: bin2dcm switched big-little endian (authored by schererj).
bin2dcm switched big-little endian
Fri, Jan 15, 11:22 AM
schererj committed rKAAPANA8f25af8f8c52: bin2dcm switched big-little endian (authored by schererj).
bin2dcm switched big-little endian
Fri, Jan 15, 11:17 AM
schererj committed rKAAPANA35edb406c82e: bin2dcm template adaptions (authored by schererj).
bin2dcm template adaptions
Fri, Jan 15, 10:36 AM
schererj committed rKAAPANA8810ad48b5ba: bin2dcm working (authored by schererj).
bin2dcm working
Fri, Jan 15, 10:31 AM

Thu, Jan 14

schererj committed rKAAPANAac0d3151b3da: increased CTP heap-size to Xms512 / Xmx1024 (authored by schererj).
increased CTP heap-size to Xms512 / Xmx1024
Thu, Jan 14, 5:38 PM
kislinsk triaged T28159: Oficially support MITK using system Qt as Normal priority.

As it already works (?) and we will stay at least another year with Qt 5 we can do this. But in general, do you know of the new Qt Installer Framework with command-line interface? It's much easier now to install Qt with a single command and there a a few possibilities to provide credentials if that's an issue. See here for examples: https://phabricator.mitk.org/T27960#214043

Thu, Jan 14, 5:22 PM · CI, Kaapana (internal), Request for Discussion, MITK
schererj committed rKAAPANA8169633f8dcc: ctp update (authored by schererj).
ctp update
Thu, Jan 14, 4:55 PM
neher added a comment to T28017: Update to vtk 9.

Fiber mapper issue: https://vtk.org/doc/nightly/html/classvtkOpenGLPolyDataMapper.html#a80cc4bf99b408c63cad0a59c0388ffae

Thu, Jan 14, 4:47 PM · MITK Diffusion
neher committed rMITKDIFF79272f527e51: Merge branch 'T28017-VTK9-CodeIssues' (authored by neher).
Merge branch 'T28017-VTK9-CodeIssues'
Thu, Jan 14, 4:42 PM
neher committed rMITKDIFFdd4062dbe8b6: Solved tinyxml update issues (authored by neher).
Solved tinyxml update issues
Thu, Jan 14, 4:42 PM
nolden added a project to T28159: Oficially support MITK using system Qt: CI.
Thu, Jan 14, 3:51 PM · CI, Kaapana (internal), Request for Discussion, MITK
nolden updated the task description for T28159: Oficially support MITK using system Qt.
Thu, Jan 14, 3:50 PM · CI, Kaapana (internal), Request for Discussion, MITK
nolden created T28159: Oficially support MITK using system Qt.
Thu, Jan 14, 3:46 PM · CI, Kaapana (internal), Request for Discussion, MITK
kislinsk closed T28155: Make Qt log messages optional as Resolved.
Thu, Jan 14, 11:09 AM · MITK (2020)
kislinsk added a comment to T28155: Make Qt log messages optional.

Deleted branch feature/T28155-MakeQtLogMessagesOptional.

Thu, Jan 14, 11:08 AM · MITK (2020)
kislinsk committed rMITK8aeabe996f16: Make Qt log messages optional (authored by kislinsk).
Make Qt log messages optional
Thu, Jan 14, 11:08 AM
kislinsk committed rMITK46eee069a4bf: Merge branch 'feature/T28155-MakeQtLogMessagesOptional' into develop (authored by kislinsk).
Merge branch 'feature/T28155-MakeQtLogMessagesOptional' into develop
Thu, Jan 14, 11:08 AM
kislinsk added a comment to T28155: Make Qt log messages optional.

Pushed new branch feature/T28155-MakeQtLogMessagesOptional.

Thu, Jan 14, 11:07 AM · MITK (2020)
p212r removed a watcher for Kaapana (internal): p212r.
Thu, Jan 14, 10:02 AM
p212r added a watcher for Kaapana (internal): p212r.
Thu, Jan 14, 10:02 AM
gaoh added a member for Kaapana (internal): e249r.
Thu, Jan 14, 9:39 AM
schererj added a member for Kaapana (internal): p212r.
Thu, Jan 14, 9:39 AM

Wed, Jan 13

kalali triaged T28156: [Segmentation] Fix timestep / timepoint types as Normal priority.
Wed, Jan 13, 3:43 PM · MITK
kislinsk added a revision to T28155: Make Qt log messages optional: Unknown Object (Differential Revision).
Wed, Jan 13, 3:33 PM · MITK (2020)
kislinsk triaged T28155: Make Qt log messages optional as Normal priority.
Wed, Jan 13, 3:26 PM · MITK (2020)
kislinsk updated subscribers of T28151: [macOS] MITK (resp. VTK) doesn't compile with XCode 12.
Wed, Jan 13, 2:53 PM · Noteworthy, MITK (2020)
kislinsk closed T28151: [macOS] MITK (resp. VTK) doesn't compile with XCode 12 as Resolved.

Since we need to patch VTK anyway, I took the opportunity to upgrade from VTK 9.0.0 to 9.0.1.

Wed, Jan 13, 2:52 PM · Noteworthy, MITK (2020)
kislinsk added a comment to T28151: [macOS] MITK (resp. VTK) doesn't compile with XCode 12.

Deleted branch bugfix/T28151-FixVTKOnMacOSXCode12.

Wed, Jan 13, 2:51 PM · Noteworthy, MITK (2020)
kislinsk committed rMITKc0ad4f1441a1: Exclude unistd.h from Windows builds (authored by kislinsk).
Exclude unistd.h from Windows builds
Wed, Jan 13, 2:47 PM
kislinsk committed rMITKda3e2af67311: Merge branch 'bugfix/T28151-FixVTKOnMacOSXCode12' into develop (authored by kislinsk).
Merge branch 'bugfix/T28151-FixVTKOnMacOSXCode12' into develop
Wed, Jan 13, 2:47 PM
kislinsk committed rMITK6617af527acd: Patch (and upgrade) VTK (authored by kislinsk).
Patch (and upgrade) VTK
Wed, Jan 13, 2:16 PM
kislinsk committed rMITKca75fe9867c2: Fix compiler errors with XCode 12 (authored by kislinsk).
Fix compiler errors with XCode 12
Wed, Jan 13, 2:16 PM
kislinsk committed rMITKbce1eaddb837: Merge branch 'bugfix/T28151-FixVTKOnMacOSXCode12' into develop (authored by kislinsk).
Merge branch 'bugfix/T28151-FixVTKOnMacOSXCode12' into develop
Wed, Jan 13, 2:16 PM
schererj committed rKAAPANAb4f64cd92675: included dag for racoon merge models (authored by schererj).
included dag for racoon merge models
Wed, Jan 13, 12:04 PM
gaoh added a comment to T28127: Reopen segmentation in MITK.

Oh I forgot to mention: the segmentation is saved as dicom-seg.

Wed, Jan 13, 10:09 AM · MITK (2020), Restricted Project, Kaapana (internal)
gaoh raised the priority of T28127: Reopen segmentation in MITK from High to Unbreak Now!.
Wed, Jan 13, 10:06 AM · MITK (2020), Restricted Project, Kaapana (internal)
kislinsk added a comment to T28151: [macOS] MITK (resp. VTK) doesn't compile with XCode 12.

Pushed new branch bugfix/T28151-FixVTKOnMacOSXCode12.

Wed, Jan 13, 9:45 AM · Noteworthy, MITK (2020)

Tue, Jan 12

gtbuzz updated the task description for T28152: Question about source code and executable example app.
Tue, Jan 12, 5:17 PM
gtbuzz created T28152: Question about source code and executable example app.
Tue, Jan 12, 5:16 PM
schererj committed rKAAPANAb87922399e25: added bin2dicom (authored by schererj).
added bin2dicom
Tue, Jan 12, 5:07 PM

Mon, Jan 11

kislinsk triaged T28151: [macOS] MITK (resp. VTK) doesn't compile with XCode 12 as Unbreak Now! priority.
Mon, Jan 11, 11:18 PM · Noteworthy, MITK (2020)
kislinsk closed T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start , a subtask of T27196: Rewrite packaging of MITK, as Resolved.
Mon, Jan 11, 11:12 PM · MITK, Next Milestone, Cleared
kislinsk closed T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start as Resolved.
Mon, Jan 11, 11:12 PM · MITK (2020)
kislinsk added a comment to T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start .

Deleted branch bugfix/T27717-FixMacOSInstallerOpenApp.

Mon, Jan 11, 11:12 PM · MITK (2020)
kislinsk committed rMITKff9ca2f439c0: Fix num of chars in strncmp() (authored by kislinsk).
Fix num of chars in strncmp()
Mon, Jan 11, 11:12 PM
kislinsk committed rMITK35cc4be67bda: Merge branch 'bugfix/T27717-FixMacOSInstallerOpenApp' into develop (authored by kislinsk).
Merge branch 'bugfix/T27717-FixMacOSInstallerOpenApp' into develop
Mon, Jan 11, 11:12 PM
kislinsk added a comment to T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start .

Pushed new branch bugfix/T27717-FixMacOSInstallerOpenApp.

Mon, Jan 11, 11:11 PM · MITK (2020)
kislinsk added a comment to T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start .

rMITKf54a83e25846: Fix memory leak and refactor parts of BaseApplication

Mon, Jan 11, 9:25 PM · MITK (2020)
kislinsk claimed T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start .
Mon, Jan 11, 8:56 PM · MITK (2020)
floca triaged T28150: [RT] Refactor RT Dose reader as Normal priority.
Mon, Jan 11, 7:19 PM · MITK
floca added a comment to T27689: RTDose image can not be serialized and workbench crashes upon loading.

Ok. Found the problem. Should now be fixed with the new diff. At least it works on my PC now with the test files.

Mon, Jan 11, 7:12 PM · Request for Discussion, MITK
kislinsk added a comment to T28039: DICOM Seg loading error.

I set the GIT_TAG of DCMQI locally to v1.2.3 and I can confirm that the data from above can be loaded.

Mon, Jan 11, 5:01 PM · MITK (2020), Missing Info, Request for Discussion
kislinsk closed T28137: Extension point for org.mitk.gui.qt.datamanager.contextMenuActions does not work anymore as Resolved.

Was removed in rMITK66bb0d67 and forgotten to get restored in rMITK02a46548.

Mon, Jan 11, 3:58 PM · MITK (2020)
kislinsk added a comment to T28137: Extension point for org.mitk.gui.qt.datamanager.contextMenuActions does not work anymore.

Deleted branch bugfix/T28137-FixMissingContextMenuEntries.

Mon, Jan 11, 3:57 PM · MITK (2020)
kislinsk committed rMITK1aa2efd2c474: Add missing context menu extension point line (authored by kislinsk).
Add missing context menu extension point line
Mon, Jan 11, 3:57 PM
kislinsk committed rMITK2e864760744f: Merge branch 'bugfix/T28137-FixMissingContextMenuEntries' into develop (authored by kislinsk).
Merge branch 'bugfix/T28137-FixMissingContextMenuEntries' into develop
Mon, Jan 11, 3:57 PM
kislinsk added a comment to T28137: Extension point for org.mitk.gui.qt.datamanager.contextMenuActions does not work anymore.

Pushed new branch bugfix/T28137-FixMissingContextMenuEntries.

Mon, Jan 11, 3:55 PM · MITK (2020)
kislinsk added a comment to T28137: Extension point for org.mitk.gui.qt.datamanager.contextMenuActions does not work anymore.

Thanks @kalali, nice find and hint. A sneaky line is missing in DataManager's plugin.xml: <extension-point id="contextMenuActions" name="Context menu actions"/>.

Mon, Jan 11, 3:51 PM · MITK (2020)
kislinsk claimed T28137: Extension point for org.mitk.gui.qt.datamanager.contextMenuActions does not work anymore.
Mon, Jan 11, 3:39 PM · MITK (2020)
schererj committed rKAAPANAfbca53d94f08: update code-server to v3.8.0 (authored by schererj).
update code-server to v3.8.0
Mon, Jan 11, 2:08 PM
kislinsk raised the priority of T28137: Extension point for org.mitk.gui.qt.datamanager.contextMenuActions does not work anymore from High to Unbreak Now!.
Mon, Jan 11, 12:08 PM · MITK (2020)
floca edited projects for T28039: DICOM Seg loading error, added: Request for Discussion, Missing Info, MITK (2020); removed MITK.

@fedorov Happy new year and thanks for keeping us up to date!

Mon, Jan 11, 11:29 AM · MITK (2020), Missing Info, Request for Discussion
kompan lowered the priority of T27153: Fit CRMO2-model to mean value of ROI from Normal to Low.
Mon, Jan 11, 10:10 AM · Restricted Project

Sat, Jan 9

floca triaged T28148: Fix/Refactor ContourElement as Unbreak Now! priority.
Sat, Jan 9, 4:52 PM · MITK (2020)
floca added a revision to T26975: 2D Fast Marching for 4D data intermediate state displays segmentation in other timesteps: Unknown Object (Differential Revision).
Sat, Jan 9, 1:27 PM · Missing Info, MITK (2020)

Thu, Jan 7

m564f committed rKAAPANA5ff8578424b9: typos and ingress path fixed (authored by m564f).
typos and ingress path fixed
Thu, Jan 7, 1:47 PM
m564f committed rKAAPANA73ed04a72c10: fixed version issues and typos (authored by m564f).
fixed version issues and typos
Thu, Jan 7, 1:47 PM
gaoh committed rKAAPANAa17c190080be: CTP has additonal options: (authored by gaoh).
CTP has additonal options:
Thu, Jan 7, 11:11 AM

Tue, Jan 5

floca triaged T28146: Rework how SegTool2D should add contour markers as Low priority.
Tue, Jan 5, 5:06 PM · MITK
floca triaged T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures. as Normal priority.
Tue, Jan 5, 4:56 PM · MITK
floca created T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures..
Tue, Jan 5, 4:55 PM · MITK
floca triaged T28144: CorrectorTool does not properly handle unlocked lables of LabelSet Images as Normal priority.
Tue, Jan 5, 4:41 PM · MITK
floca added a comment to T26975: 2D Fast Marching for 4D data intermediate state displays segmentation in other timesteps.

Will be fixed (is fixed already) by the rework done in T28118.

Tue, Jan 5, 4:30 PM · Missing Info, MITK (2020)
floca added a revision to T27800: [Segmentation] Live Wire crashes with 4D image and static segmentation: Restricted Differential Revision.
Tue, Jan 5, 11:01 AM · MITK (2020)
floca added a revision to T28128: ContourModels are not correctly rendered on time steps > 0: Restricted Differential Revision.
Tue, Jan 5, 11:01 AM · MITK
floca added a revision to T28129: Contour interactor do not handle time steps > 0 correctly and do not support time geometries correctly: Restricted Differential Revision.
Tue, Jan 5, 11:01 AM · MITK

Mon, Jan 4

schellem closed T28143: PAI Absorption spectra correction as Resolved.
Mon, Jan 4, 9:59 PM · Photoacoustics, CAMI
schellem added a comment to T28143: PAI Absorption spectra correction.

Pushed new branch T28143-AbsSpectraCorrection.

Mon, Jan 4, 9:57 PM · Photoacoustics, CAMI
schellem triaged T28143: PAI Absorption spectra correction as Normal priority.
Mon, Jan 4, 9:51 PM · Photoacoustics, CAMI
thomass added a comment to T27689: RTDose image can not be serialized and workbench crashes upon loading.

The scene is created successfully if following (deprecated) properties are disabled in mitkDICOMImageBlockDescriptor.cpp:

Mon, Jan 4, 5:10 PM · Request for Discussion, MITK
kalali triaged T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation as Normal priority.
Mon, Jan 4, 12:29 PM · Next Milestone, MITK
kalali renamed T27637: [Segmentation] Multilabel label name dialoge on label creation is a UX problem from [Segmentation] Multilable label name dialoge on label creation is a UX problem to [Segmentation] Multilabel label name dialoge on label creation is a UX problem.
Mon, Jan 4, 12:21 PM · Request for Discussion, MITK
kalali added a comment to T28118: Refactoring of SegTool2D.

Regarding the selection, I think you are rigt and there should ultimatly be no difference. But for the current strive for getting things cleaned up and in shape, it is of lower priority. I am happy, if we get through with the fundamental rework and time consistency stuff for this release.

Mon, Jan 4, 12:07 PM · MITK (2020)
floca added a comment to T28118: Refactoring of SegTool2D.

Looking through the checklists I found that the 2D tools of the segmentation view are different than the 2D tools of the Multilabel segmentation (one more: Fast Marching is missing).

What do you mean with different. Different in there behavior or a different selection of tools.

Mon, Jan 4, 11:45 AM · MITK (2020)

Sun, Jan 3

kalali triaged T28140: [MultiLabel Segmentation] Default parameter (unsigned int layer = 0) is unnecessary and causes problems as Normal priority.
Sun, Jan 3, 4:04 PM · Next Milestone, MITK
kalali triaged T28139: [LabelSetImage] Ambigious meaning of "layer" in LabelSetImage as Normal priority.
Sun, Jan 3, 3:27 PM · Next Milestone, MITK

Sat, Jan 2

kalali renamed T28138: [MultiLabel Segmentation] Add tests for the LabelSetImage from [MultiLabel Segmentation] Add tests for the Label Set Image to [MultiLabel Segmentation] Add tests for the LabelSetImage.
Sat, Jan 2, 9:19 PM · MITK (2020)
kalali triaged T28138: [MultiLabel Segmentation] Add tests for the LabelSetImage as Normal priority.
Sat, Jan 2, 5:48 PM · MITK (2020)
kalali placed T28132: Extend "Checkliste MultiLabel Segmentierung – Interpolation" up for grabs.
Sat, Jan 2, 4:31 PM · MITK (2020)
kalali added a comment to T28136: Extend "Checkliste MultiLabel Segmentierung – Optionen".

There are some issues / open questions regarding the MultiLabel Segmentation options:
T26959: Newly created LabelSet segmentation is not displayed as "outline binary", T27712: Preference "Show as volume rendering" does not display segmentation volume in 4-window view, T27498#216892, T28137: Extension point for org.mitk.gui.qt.datamanager.contextMenuActions does not work anymore.

Sat, Jan 2, 4:27 PM · MITK (2020)