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kislinsk added a comment to T27908: [MITKDoc] Update Multilabel Segmentation documentation regarding label presets.

Deleted branch bugfix/T27908-UpdateMultilabelSegmentationDoc.

Wed, Oct 28, 10:41 AM · Cleared, MITK (2020)
kislinsk committed rMITK7e02155bc8ba: Add section about label set presets to multilabel segmentation documentation (authored by kislinsk).
Add section about label set presets to multilabel segmentation documentation
Wed, Oct 28, 10:41 AM
kislinsk closed T27908: [MITKDoc] Update Multilabel Segmentation documentation regarding label presets as Resolved by committing rMITK7e02155bc8ba: Add section about label set presets to multilabel segmentation documentation.
Wed, Oct 28, 10:40 AM · Cleared, MITK (2020)
kislinsk edited the content of Merging into master Branch.
Wed, Oct 28, 7:50 AM
kislinsk closed T27663: Crosshair navigation not disabled in QmitkMeasurementView as Wontfix.

I see. The only implication however is that one is able to scroll through the slices while placing a planar figure while placing control points on different slices is prevented, so I would say this is more like a feature than a bug, as one can look up neighboring slices during placement to support the decision where to exactly place points.

Wed, Oct 28, 7:05 AM · MITK
kislinsk added a comment to T27908: [MITKDoc] Update Multilabel Segmentation documentation regarding label presets.

Pushed new branch bugfix/T27908-UpdateMultilabelSegmentationDoc.

Wed, Oct 28, 6:59 AM · Cleared, MITK (2020)
kislinsk closed T27844: CDash links to commits in phabricator seems not to work correctly as Resolved.

As the devs of CDash prefer to stay dead silent about this feature both in the issue linked above and on the mailing list, I think we can make an educated guess that it is not implemented.

Wed, Oct 28, 6:56 AM · Restricted Project, Restricted Project, MITK
kislinsk added a revision to T27908: [MITKDoc] Update Multilabel Segmentation documentation regarding label presets: Unknown Object (Differential Revision).
Wed, Oct 28, 6:52 AM · Cleared, MITK (2020)

Yesterday

schererj committed rKAAPANAd8559b56c7f4: Merge tag '0.1.0-pull-policy-fix' into develop (authored by schererj).
Merge tag '0.1.0-pull-policy-fix' into develop
Tue, Oct 27, 12:26 PM
k656s committed rKAAPANA0b896a460178: Merge branch 'hotfix/0.1.0-pull-policy-fix' (authored by k656s).
Merge branch 'hotfix/0.1.0-pull-policy-fix'
Tue, Oct 27, 12:22 PM
k656s committed rKAAPANA2db0d14b7648: fixed docu location (authored by k656s).
fixed docu location
Tue, Oct 27, 12:12 PM
k656s committed rKAAPANA9e053ceaf319: added more memory to dicom-init (authored by k656s).
added more memory to dicom-init
Tue, Oct 27, 11:48 AM
k656s committed rKAAPANA422107f8ba37: updated readme badge (authored by k656s).
updated readme badge
Tue, Oct 27, 11:18 AM
k656s committed rKAAPANAdab41264e353: fixed release version to 0.1.0 (authored by k656s).
fixed release version to 0.1.0
Tue, Oct 27, 11:16 AM
k656s committed rKAAPANA4d0341536ebe: fixed pull-policy to Always (authored by k656s).
fixed pull-policy to Always
Tue, Oct 27, 11:12 AM
floca added a comment to T27605: Stitching functionality.

Deleted branch feature/T27605-Stitching_filter.

Tue, Oct 27, 8:59 AM · Noteworthy, MITK

Mon, Oct 26

floca closed T27210: Stitching tool for images as Resolved.

Solved by T27605

Mon, Oct 26, 8:41 PM · Restricted Project, Restricted Project
schererj committed rKAAPANA9aa7d235ef3f: Merge tag '0.1.0' into develop (authored by schererj).
Merge tag '0.1.0' into develop
Mon, Oct 26, 7:04 PM
schererj committed rKAAPANAa9da7114f8ab: Kaapana release 0.1.0 (authored by schererj).
Kaapana release 0.1.0
Mon, Oct 26, 7:04 PM
schererj committed rKAAPANA484b015be864: extended get-models dl_lock_file check (authored by schererj).
extended get-models dl_lock_file check
Mon, Oct 26, 6:41 PM
schererj committed rKAAPANA9c9129f3057a: changed logs for nnunet get-models (authored by schererj).
changed logs for nnunet get-models
Mon, Oct 26, 6:06 PM
k656s committed rKAAPANA3d9d22fac1c2: added hint for delete-series workflow (authored by k656s).
added hint for delete-series workflow
Mon, Oct 26, 5:59 PM
k656s committed rKAAPANA7aed810ecd5b: fix in LocalMinioOperator.py (authored by k656s).
fix in LocalMinioOperator.py
Mon, Oct 26, 5:45 PM
t006d moved T27917: Small 2 Minute Presentation about my work from Backlog to AuxiliaryStuff on the Tassilo Wald board.
Mon, Oct 26, 5:26 PM · Tassilo Wald
t006d set the color for Tassilo Wald to Grey.
Mon, Oct 26, 5:25 PM
t006d changed the edit policy for T27917: Small 2 Minute Presentation about my work.
Mon, Oct 26, 5:25 PM · Tassilo Wald
t006d created T27917: Small 2 Minute Presentation about my work.
Mon, Oct 26, 5:23 PM · Tassilo Wald
schererj committed rKAAPANAac4e4273267b: some docs corrections (authored by schererj).
some docs corrections
Mon, Oct 26, 5:17 PM
kislinsk closed T27914: Transform relative MITK extension dirs to absolute dirs as Resolved.
Mon, Oct 26, 4:52 PM · MITK
kislinsk added a comment to T27914: Transform relative MITK extension dirs to absolute dirs.

Deleted branch bugfix/T27914-AbsoluteMITKExtensionDirs.

Mon, Oct 26, 4:52 PM · MITK
kislinsk committed rMITK659426760b45: Merge branch 'bugfix/T27914-AbsoluteMITKExtensionDirs' into develop (authored by kislinsk).
Merge branch 'bugfix/T27914-AbsoluteMITKExtensionDirs' into develop
Mon, Oct 26, 4:51 PM
kislinsk added a comment to T27914: Transform relative MITK extension dirs to absolute dirs.

Pushed new branch bugfix/T27914-AbsoluteMITKExtensionDirs.

Mon, Oct 26, 4:49 PM · MITK
schererj committed rKAAPANAcab1c9c79948: Added 'build-configuration.yaml' to .gitignore (authored by schererj).
Added 'build-configuration.yaml' to .gitignore
Mon, Oct 26, 4:25 PM
schererj committed rKAAPANAdf03640bb6f1: last release configurations (authored by schererj).
last release configurations
Mon, Oct 26, 4:23 PM
schererj committed rKAAPANA5f1879444d0e: back to old dcm4chee version (authored by schererj).
back to old dcm4chee version
Mon, Oct 26, 3:50 PM
schererj committed rKAAPANAdd1bbb7c69f4: adjusted disk space check to correct destination (authored by schererj).
adjusted disk space check to correct destination
Mon, Oct 26, 3:28 PM
schererj committed rKAAPANA26391123231e: dcm4chee update (authored by schererj).
dcm4chee update
Mon, Oct 26, 3:20 PM
schererj committed rKAAPANAe1cc8ab9d73a: get input data fix (authored by schererj).
get input data fix
Mon, Oct 26, 2:24 PM
kalali added a comment to T27906: Extend "Checkliste Segmentierung – Utilities".

I updated the document and added content to explicitly test

  • utilities / tools / operations on a 3D image
  • combination of 3D images with dynamic segmentation / surface
  • combination of 4D images with static segmentation / surface
  • combination of dynamic and static segmentation
Mon, Oct 26, 2:14 PM · Cleared, MITK (2020)
reinkea renamed T27915: Podium plot shrinks for long algorithm names from Podium plot is shrinked for long algorithm names to Podium plot shrinks for long algorithm names.
Mon, Oct 26, 2:11 PM · challengeR (v1.0)
reinkea created T27915: Podium plot shrinks for long algorithm names.
Mon, Oct 26, 2:11 PM · challengeR (v1.0)
schererj committed rKAAPANA4c709ebaf4fc: check_modality defautl false + kibana plugin fix for cached form_data (authored by schererj).
check_modality defautl false + kibana plugin fix for cached form_data
Mon, Oct 26, 12:58 PM
k656s committed rKAAPANA13df7ec82b61: comments on extensions (authored by k656s).
comments on extensions
Mon, Oct 26, 12:06 PM
kalali updated the task description for T27913: [Segmentation] Warnings in utilities view are inconsistent.
Mon, Oct 26, 11:41 AM · MITK
k656s committed rKAAPANA34e80c5c3dfd: adapted pull policy jobs for extensions (authored by k656s).
adapted pull policy jobs for extensions
Mon, Oct 26, 11:35 AM
kislinsk triaged T27914: Transform relative MITK extension dirs to absolute dirs as Unbreak Now! priority.
Mon, Oct 26, 11:24 AM · MITK
kalali reopened T17656: ProgressBar for morphological operations as "Open".

I just stumbled upon this while testing the utilities with 4D data. Depending on the number of timesteps and the complexity of the operation the selected operation might take a while (you ca actually see the progress in the console output).
This should be discussed as I do not see any

whole new segmentation functionality this year

Mon, Oct 26, 11:21 AM · Request for Discussion, MITK, Bugzilla
kalali triaged T27913: [Segmentation] Warnings in utilities view are inconsistent as Normal priority.
Mon, Oct 26, 11:07 AM · MITK
kislinsk added a comment to T27910: 2020 Week 43 (Late October).

Deleted branch release/T27910-2020-Week-43.

Mon, Oct 26, 11:06 AM · MITK

Fri, Oct 23

schererj committed rKAAPANAf612df10512d: docs license link adjustments (authored by schererj).
docs license link adjustments
Fri, Oct 23, 10:02 PM
schererj committed rKAAPANAf83caad6045c: re-index fix (authored by schererj).
re-index fix
Fri, Oct 23, 8:06 PM
k656s committed rKAAPANAde04e69993b4: updated extensions, not final version yet (authored by k656s).
updated extensions, not final version yet
Fri, Oct 23, 7:43 PM
schererj committed rKAAPANA7bf688ada648: gpu pool update in util_helper (authored by schererj).
gpu pool update in util_helper
Fri, Oct 23, 7:13 PM
floca added a parent task for T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG: T27178: MITK - DICOM Seg - loaded DCM SEG not associated with referenced DCM .
Fri, Oct 23, 6:54 PM · MITK, Next Milestone, Cleared
floca added a subtask for T27178: MITK - DICOM Seg - loaded DCM SEG not associated with referenced DCM : T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG.
Fri, Oct 23, 6:54 PM · Missing Info, MITK
floca edited projects for T27178: MITK - DICOM Seg - loaded DCM SEG not associated with referenced DCM , added: Missing Info; removed Request for Discussion.

Removed request for discussion. Nothing to discuss now:
Problem 1: We would neet more information about the specific use case /user story as it should be handled by a dedicated UI/DataStorageInspector (for the SelectionDialog e.g. in the Segmentation Flow)

Fri, Oct 23, 6:53 PM · Missing Info, MITK
k656s committed rKAAPANA097b79b53505: updated chart descriptions (authored by k656s).
updated chart descriptions
Fri, Oct 23, 6:38 PM
k656s committed rKAAPANAaaec04e75ea6: removed not deployed message (authored by k656s).
removed not deployed message
Fri, Oct 23, 6:34 PM
k656s committed rKAAPANAa0506b853267: fixed link on landing page (authored by k656s).
fixed link on landing page
Fri, Oct 23, 6:22 PM
k656s committed rKAAPANAc9ce35a2a53f: updated licence and contact (authored by k656s).
updated licence and contact
Fri, Oct 23, 6:06 PM
k656s committed rKAAPANA665a76a4aadd: updated licence and contact (authored by k656s).
updated licence and contact
Fri, Oct 23, 6:06 PM
k656s committed rKAAPANA4a6bfab0d473: updated glossary and made many small fixes (authored by k656s).
updated glossary and made many small fixes
Fri, Oct 23, 5:47 PM
kislinsk closed T27910: 2020 Week 43 (Late October) as Resolved.
Fri, Oct 23, 5:22 PM · MITK
kislinsk committed rMITK701c8286244c: Merge branch 'master' into develop (authored by kislinsk).
Merge branch 'master' into develop
Fri, Oct 23, 5:15 PM
kislinsk committed rMITKf09362ceac6d: 2020 Week 43 (Late October) (authored by kislinsk).
2020 Week 43 (Late October)
Fri, Oct 23, 5:14 PM
kislinsk edited the content of Changelog.
Fri, Oct 23, 4:57 PM · MITK
kislinsk edited the content of 2020 Week 43 (Late October).
Fri, Oct 23, 4:57 PM
schererj committed rKAAPANAad57aabdb9b7: nnunet GPU scheduler (authored by schererj).
nnunet GPU scheduler
Fri, Oct 23, 4:29 PM
neher committed rKAAPANA1b5f196d2926: update readme (authored by neher).
update readme
Fri, Oct 23, 3:56 PM
neher committed rKAAPANAf06263091099: added readme content (authored by neher).
added readme content
Fri, Oct 23, 3:53 PM
k656s committed rKAAPANA93445a9879f3: updated docker version (authored by k656s).
updated docker version
Fri, Oct 23, 3:17 PM
kislinsk added a comment to T27910: 2020 Week 43 (Late October).

Pushed new branch release/T27910-2020-Week-43.

Fri, Oct 23, 1:40 PM · MITK
kislinsk triaged T27910: 2020 Week 43 (Late October) as Normal priority.
Fri, Oct 23, 1:38 PM · MITK
kislinsk created T27910: 2020 Week 43 (Late October).
Fri, Oct 23, 1:38 PM · MITK
kislinsk created an object: 2020 Week 43 (Late October).
Fri, Oct 23, 1:38 PM
kislinsk closed T27902: Handle slashes in installer names as Resolved.

Slashes are now replaced by underscores.

Fri, Oct 23, 1:34 PM · MITK (2020)
kislinsk added a comment to T27902: Handle slashes in installer names.

Deleted branch bugfix/T27902-ReplaceSlashesInInstallerName.

Fri, Oct 23, 1:34 PM · MITK (2020)
kislinsk committed rMITKf8ca3b7be4a9: Merge branch 'bugfix/T27902-ReplaceSlashesInInstallerName' into develop (authored by kislinsk).
Merge branch 'bugfix/T27902-ReplaceSlashesInInstallerName' into develop
Fri, Oct 23, 1:33 PM
kislinsk added a comment to T27902: Handle slashes in installer names.

Pushed new branch bugfix/T27902-ReplaceSlashesInInstallerName.

Fri, Oct 23, 1:33 PM · MITK (2020)
kompan triaged T27909: Perfusion DataFit View: Incorrect calculation fo the maximum signal for the Two Step Linear Model as Normal priority.
Fri, Oct 23, 1:18 PM · Next Milestone, MITK
k656s committed rKAAPANA0c452dc396a1: fixed prefetching in kube-helm (authored by k656s).
fixed prefetching in kube-helm
Fri, Oct 23, 1:13 PM
kislinsk claimed T27902: Handle slashes in installer names.
Fri, Oct 23, 1:12 PM · MITK (2020)
kislinsk triaged T27908: [MITKDoc] Update Multilabel Segmentation documentation regarding label presets as Normal priority.
Fri, Oct 23, 1:10 PM · Cleared, MITK (2020)
kalali moved T27907: Extend "Checkliste Documentation" from Backlog to Documentation on the MITK (2020) board.
Fri, Oct 23, 12:22 PM · Cleared, MITK (2020)
kalali triaged T27907: Extend "Checkliste Documentation" as Normal priority.
Fri, Oct 23, 12:22 PM · Cleared, MITK (2020)
kalali moved T27906: Extend "Checkliste Segmentierung – Utilities" from Backlog to Segmentation on the MITK (2020) board.
Fri, Oct 23, 12:16 PM · Cleared, MITK (2020)
kalali triaged T27906: Extend "Checkliste Segmentierung – Utilities" as High priority.
Fri, Oct 23, 12:16 PM · Cleared, MITK (2020)
kompan added a comment to T8140: Reimplement volume annotations for segmentations.

This tasks came up again in the discussion of the clipping plane plugin, which allows for volume annotations for segmentations. Since we decided to remove the clipping plane plugin from the MITK release, this task was tagged with "Next Milestone" in order to restore the useful feature of volume annotations also outside the clipping plane plugin.

Fri, Oct 23, 12:09 PM · Next Milestone, Bugzilla, MITK
schererj committed rKAAPANA61dd4be6e56b: Merge branch 'release/0.1.0' of https://phabricator.mitk.org/source/kaapana… (authored by schererj).
Merge branch 'release/0.1.0' of https://phabricator.mitk.org/source/kaapana…
Fri, Oct 23, 11:51 AM
schererj committed rKAAPANA432845ac7ddb: added lock-file if model-download already going (authored by schererj).
added lock-file if model-download already going
Fri, Oct 23, 11:51 AM
kislinsk added a comment to T27851: Unhide label presets.

Deleted branch bugfix/T27851-FixLabelSetPresetsAndMakeThemMoreAccessible.

Fri, Oct 23, 11:49 AM · MITK (2020)
kislinsk committed rMITK499751fb1eca: Fix loading and saving of LabelSet presets and make it more accessible (authored by kislinsk).
Fix loading and saving of LabelSet presets and make it more accessible
Fri, Oct 23, 11:49 AM
kislinsk closed T27851: Unhide label presets as Resolved by committing rMITK499751fb1eca: Fix loading and saving of LabelSet presets and make it more accessible.
Fri, Oct 23, 11:49 AM · MITK (2020)
k656s committed rKAAPANA20731bf3f611: fixed typo (authored by k656s).
fixed typo
Fri, Oct 23, 11:48 AM
k656s committed rKAAPANAde0ff422e252: moved base-platform and dcmwebsendoperator to dcipher (authored by k656s).
moved base-platform and dcmwebsendoperator to dcipher
Fri, Oct 23, 11:48 AM
kislinsk edited projects for T27383: Update external toolkits, added: MITK (2020); removed MITK.
Fri, Oct 23, 11:46 AM · MITK (2020)
kislinsk renamed T8140: Reimplement volume annotations for segmentations from Implement volume annotation for ImageVtkMapper2D to Reimplement volume annotations for segmentations.
Fri, Oct 23, 11:44 AM · Next Milestone, Bugzilla, MITK
kislinsk removed a project from T8140: Reimplement volume annotations for segmentations: Request for Discussion.
Fri, Oct 23, 11:43 AM · Next Milestone, Bugzilla, MITK
kislinsk removed a project from T27383: Update external toolkits: Request for Discussion.
Fri, Oct 23, 11:41 AM · MITK (2020)
schererj committed rKAAPANA1fb0f06c1633: added lock-file if model-download already going (authored by schererj).
added lock-file if model-download already going
Fri, Oct 23, 11:35 AM