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amancino90 created T27663: Crosshair navigation not disabled in QmitkMeasurementView .
Mon, Aug 10, 10:49 PM · MITK
kahl added a comment to T27564: [Segmentation] Integrate deep learning methods for Segmentation in MITK.

Pushed new branch feature/T27564-integrate-deeplearning-segmentation-evaluation.

Mon, Aug 10, 5:36 PM · MITK
kislinsk added a project to T27661: [Documentation] Update "How to create a new MITK Module": Cleared.
Mon, Aug 10, 12:41 PM · Cleared, MITK (2020)
kislinsk added a comment to T27661: [Documentation] Update "How to create a new MITK Module".

Thanks for the report. I renamed the task to an actual task as the documentation you are referring to seems not up-to-date regarding ModuleList.cmake. For questions, though, please use the #help-mitk Slack channel or the mitk-users mailing list (public).

Mon, Aug 10, 12:41 PM · Cleared, MITK (2020)
kislinsk moved T27661: [Documentation] Update "How to create a new MITK Module" from Backlog to Documentation on the MITK (2020) board.
Mon, Aug 10, 12:29 PM · Cleared, MITK (2020)
kislinsk renamed T27661: [Documentation] Update "How to create a new MITK Module" from How to create a new MITK Module to [Documentation] Update "How to create a new MITK Module".
Mon, Aug 10, 12:29 PM · Cleared, MITK (2020)
e249r created T27661: [Documentation] Update "How to create a new MITK Module".
Mon, Aug 10, 12:14 PM · Cleared, MITK (2020)
thomass committed rMITK18ddd2ed4fc8: rewrote some sections and enabled auto select (authored by thomass).
rewrote some sections and enabled auto select
Mon, Aug 10, 10:06 AM
thomass closed T27098: [MITKDoc] Revise Image Cropper Plugin Documentation as Resolved by committing rMITK18ddd2ed4fc8: rewrote some sections and enabled auto select.
Mon, Aug 10, 10:06 AM · Cleared, MITK (2020)

Sun, Aug 9

floca added a comment to T27605: Stitching functionality.

Pushed new branch feature/T27605-Stitching_filter.

Sun, Aug 9, 4:44 PM · MITK

Sat, Aug 8

kalali added a revision to T27659: Refactor BasicImageProcessing plugin to use the new node selection widgets: Restricted Differential Revision.
Sat, Aug 8, 5:34 PM · MITK, Cleared
kalali triaged T27659: Refactor BasicImageProcessing plugin to use the new node selection widgets as Normal priority.
Sat, Aug 8, 5:01 PM · MITK, Cleared
floca added a comment to T27498: [Selection widgets] Define default for auto selection / listening mechanism.

Just a comment: Image Statistcs uses the MultiNodeSelectionWidget which offers no AutoSelect feature (on purpose, because it could be a lot selections at once...).

Sat, Aug 8, 11:56 AM · Restricted Project, MITK (2020)
kalali added a comment to T27498: [Selection widgets] Define default for auto selection / listening mechanism.

Plugins from {24775} that do not follow the discussion result and need to be refactored (SetAutoSelectNewNodes(true)):
No auto selection

  • Dicom Inspector
  • Segmentation (although it is working if the segmentation plugin is opened after a node has been loadad - but not the other way around)
  • Segmentation Utilities (QmitkDataSelectionWidget)
  • MultiLabel Segmentation Utilities (QmitkDataSelectionWidget)
  • Image Cropper (will be fixed in D375)
  • Image Statistics
  • Measurement (will be fixed in D372)
  • MatchPoint
  • Properties
  • Point Set Interaction
  • Semantic Relations
  • Semantic Relations Statistics
  • Volume Visualization
Sat, Aug 8, 10:00 AM · Restricted Project, MITK (2020)

Fri, Aug 7

amancino90 added a comment to T27652: CMake/mitkInstallRules.cmake set invalid install directory for QtWebEngine resources and translations in Linux.

I found a similar error using Qt version 5.12.6 and the pluginGenerator.
The linker's path to Qt5WebEngine is wrongly parsed as "-lQt5::WebEngine" in "MyProject/Apps/MyApp/CMakeFiles/MyApp.dir/link.txt".

Fri, Aug 7, 10:41 PM · MITK
floca added a comment to T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.

Oh I didn’t look into the Differential yet, only tried it with the current develop. The crash I observed in with FastMarching3D

Fri, Aug 7, 8:51 PM · MITK (2020), Bugzilla
thomass added a comment to T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.

Oh I didn’t look into the Differential yet, only tried it with the current develop. The crash I observed in with FastMarching3D

Fri, Aug 7, 8:49 PM · MITK (2020), Bugzilla
floca added a comment to T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.

Did you experience the error based on the Differential? Did you open FastMarching for 2D or 3D?

Fri, Aug 7, 8:43 PM · MITK (2020), Bugzilla
wiesenfa reassigned T27252: Multiple cases per algorithm are not detected when missing data was added before from wiesenfa to eisenman.
Fri, Aug 7, 2:49 PM · challengeR (v1.0)
wiesenfa added a comment to T27252: Multiple cases per algorithm are not detected when missing data was added before.

should work now, tests successful.
However warning is

Performance of not all algorithms is observed for all cases in task 'dummyTask'

despite being single task challenge. see also separate task

Fri, Aug 7, 2:47 PM · challengeR (v1.0)
thomass added a comment to T26975: 2D Fast Marching for 4D data intermediate state displays segmentation in other timesteps.

So I have a fix for the contour problem but what is missing is that the pointset is still drawn on timestep 0 instead of the current timestep and I have to figure out why.

Fri, Aug 7, 2:46 PM · Missing Info, MITK (2020)
wiesenfa committed rCHALLENGER4a2a4d181421: always check both for missings and duplicates (authored by wiesenfa).
always check both for missings and duplicates
Fri, Aug 7, 2:41 PM
thomass committed rMITK36d69b77aeaf: rewrote some sections and added new image (authored by thomass).
rewrote some sections and added new image
Fri, Aug 7, 2:31 PM
thomass closed T27107: [MITKDoc] Revise Screenshot Maker Plugin Documentation as Resolved by committing rMITK36d69b77aeaf: rewrote some sections and added new image.
Fri, Aug 7, 2:31 PM · Cleared, MITK (2020)
wiesenfa created T27658: LaTeX Warning: There were undefined references.
Fri, Aug 7, 2:31 PM · challengeR (v1.0)
wiesenfa moved T27252: Multiple cases per algorithm are not detected when missing data was added before from Backlog to In Progress on the challengeR (v1.0) board.
Fri, Aug 7, 2:10 PM · challengeR (v1.0)
wiesenfa created T27657: single task challenge treated as multi task in sanity checks gives unuseful warnings.
Fri, Aug 7, 2:10 PM · challengeR (v1.0)
thomass added a comment to T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.

I also experience a crash in the tool:

Fri, Aug 7, 1:12 PM · MITK (2020), Bugzilla
wiesenfa moved T27453: Create complete network plot in its function from Backlog to In Progress on the challengeR (v1.0) board.
Fri, Aug 7, 1:05 PM · challengeR (v1.0)
wiesenfa moved T27494: Check which files are still relevant from Backlog to In Progress on the challengeR (v1.0) board.
Fri, Aug 7, 1:03 PM · challengeR (v1.0)
wiesenfa moved T27407: Warnings are shown in multi-task challenge report for violin plot from Backlog to Done on the challengeR (v1.0) board.
Fri, Aug 7, 12:59 PM · challengeR (v1.0)
wiesenfa committed rCHALLENGER48b7e35505c6: handle warnings in violin (authored by wiesenfa).
handle warnings in violin
Fri, Aug 7, 12:57 PM
wiesenfa added a comment to T27494: Check which files are still relevant.
  • compareRanks() allows to compare 2 ranking lists and compute Kendall's tau, would leave it in package
  • benchmarkUtils allows to link with benchmark package (CRAN archived) which has some more features, but is not maintained anymore. might be dropped
Fri, Aug 7, 12:36 PM · challengeR (v1.0)
wiesenfa committed rCHALLENGER4520859fe0f3: ensure that challenge object is data.frame (authored by wiesenfa).
ensure that challenge object is data.frame
Fri, Aug 7, 12:10 PM
wiesenfa moved T27656: make sure data set is data.frame from In Progress to Done on the challengeR (v1.0) board.
Fri, Aug 7, 12:00 PM · challengeR (v1.0)
wiesenfa moved T27656: make sure data set is data.frame from Backlog to In Progress on the challengeR (v1.0) board.
Fri, Aug 7, 12:00 PM · challengeR (v1.0)
wiesenfa created T27656: make sure data set is data.frame.
Fri, Aug 7, 11:48 AM · challengeR (v1.0)
thomass updated subscribers of T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.
Fri, Aug 7, 8:46 AM · Missing Info, Restricted Project, MITK (2020)
thomass added a comment to T26975: 2D Fast Marching for 4D data intermediate state displays segmentation in other timesteps.

File is FastMarchingTool.cpp

Fri, Aug 7, 8:42 AM · Missing Info, MITK (2020)
thomass added a comment to T26975: 2D Fast Marching for 4D data intermediate state displays segmentation in other timesteps.

I can partly confirm it.

Fri, Aug 7, 8:07 AM · Missing Info, MITK (2020)

Thu, Aug 6

floca triaged T27655: [statistics] Logic of DataGeneratorBase blocks the UI thread as High priority.
Thu, Aug 6, 11:48 PM · MITK (2020)
floca created T27655: [statistics] Logic of DataGeneratorBase blocks the UI thread .
Thu, Aug 6, 11:47 PM · MITK (2020)
floca updated subscribers of T26975: 2D Fast Marching for 4D data intermediate state displays segmentation in other timesteps.

@thomass Can you confirm the problem in your todays check or is it fixed by the tasks mentioned above?

Thu, Aug 6, 11:32 PM · Missing Info, MITK (2020)
floca closed T26967: [Segmentation] Pressing the X button on threshold confirm dialogs does not stop the execution as Resolved.

Fixed by/with T27621/T27622

Thu, Aug 6, 11:29 PM · Restricted Project, Cleared, MITK (2020)
floca closed T27509: [Segmentation] How to handle 3D and 4D Segmentations on 4D images as Resolved.

Covered by the clarification for T27507

Thu, Aug 6, 11:27 PM · MITK (2020), Request for Discussion
floca added a revision to T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images: Unknown Object (Differential Revision).
Thu, Aug 6, 9:08 PM · MITK (2020), Bugzilla
thomass added a comment to T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.

2D Segmentation tools:

Thu, Aug 6, 3:45 PM · Missing Info, Restricted Project, MITK (2020)
wiesenfa added a comment to T27453: Create complete network plot in its function.

can be closed?

Thu, Aug 6, 12:29 PM · challengeR (v1.0)
wiesenfa added a comment to T27453: Create complete network plot in its function.

the complication arises to handle the automatic sizing of the plot, which is why in the first chunk it reads out the width without plotting and in the second chunk the figure width is adapted

Thu, Aug 6, 12:28 PM · challengeR (v1.0)
gaoh claimed T27101: [MITKDoc] Revise Logging Plugin Documentation.
Thu, Aug 6, 11:49 AM · Cleared, MITK (2020)
kompan moved T27654: Refactor concentration curve converter view to use new selection concept from Backlog to Perfusion on the MITK (2020) board.
Thu, Aug 6, 11:27 AM · Cleared, MITK (2020)
kompan triaged T27654: Refactor concentration curve converter view to use new selection concept as Normal priority.
Thu, Aug 6, 11:27 AM · Cleared, MITK (2020)
floca claimed T27616: [Segmentation] Otsu creates static 3D segmentation regardless of segmentation choice.
Thu, Aug 6, 11:09 AM · MITK (2020)
wiesenfa added a comment to T27453: Create complete network plot in its function.

the function is network() and is already in the report

Thu, Aug 6, 10:09 AM · challengeR (v1.0)

Wed, Aug 5

kislinsk added a parent task for T27652: CMake/mitkInstallRules.cmake set invalid install directory for QtWebEngine resources and translations in Linux: T27196: Rewrite packaging of MITK.
Wed, Aug 5, 8:52 PM · MITK
kislinsk added a subtask for T27196: Rewrite packaging of MITK: T27652: CMake/mitkInstallRules.cmake set invalid install directory for QtWebEngine resources and translations in Linux.
Wed, Aug 5, 8:52 PM · Cleared, MITK (2020)
kislinsk triaged T27652: CMake/mitkInstallRules.cmake set invalid install directory for QtWebEngine resources and translations in Linux as Low priority.

Thanks for the report. The complete packaging will be rewritten soon. Until then we strongly recommend to not use system Qt but to install Qt (version 5.12.9 is a good choice) with the official qt installer and to use Qt5_DIR to hint our CMake scripts to the lib/cmake/Qt5 directory. Don't forget to install the optional packages Qt Web Engine and Qt Script.

Wed, Aug 5, 8:51 PM · MITK
jmcuadra created T27652: CMake/mitkInstallRules.cmake set invalid install directory for QtWebEngine resources and translations in Linux.
Wed, Aug 5, 2:31 PM · MITK
kislinsk archived MICO.
Wed, Aug 5, 2:21 PM
kislinsk renamed MIC from MIA to MIC.
Wed, Aug 5, 2:21 PM
floca closed T27649: [Segmentation] How should tools listen to time changes as Resolved.
Wed, Aug 5, 11:57 AM · MITK (2020)
floca removed a project from T27649: [Segmentation] How should tools listen to time changes: Request for Discussion.

Discussion result: we go for #2 and refactor #1 out of the tools.

Wed, Aug 5, 11:57 AM · MITK (2020)
neher closed T27651: error loading .bvec files as Resolved.
Wed, Aug 5, 11:39 AM · MITK Diffusion
neher committed rMITKDIFF1e8c9a8df972: Merge branch 'T27651-BvecFiles' (authored by neher).
Merge branch 'T27651-BvecFiles'
Wed, Aug 5, 11:38 AM
neher committed rMITKDIFF010fb9d4e80b: Loading bvec files is now possible (authored by neher).
Loading bvec files is now possible
Wed, Aug 5, 11:38 AM
neher added a comment to T27651: error loading .bvec files.

Pushed new branch T27651-BvecFiles.

Wed, Aug 5, 11:38 AM · MITK Diffusion
neher triaged T27651: error loading .bvec files as Normal priority.
Wed, Aug 5, 11:37 AM · MITK Diffusion
floca moved T27143: Matchpoint Registration Evaluator- Colorblend Bug from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Wed, Aug 5, 11:22 AM · Cleared, MITK (2020), Restricted Project
floca moved T27545: Extract MITK Workbench intro part from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Wed, Aug 5, 11:22 AM · Noteworthy, Restricted Project, Restricted Project, MITK
floca moved T27649: [Segmentation] How should tools listen to time changes from Backlog to Segmentation on the MITK (2020) board.
Wed, Aug 5, 11:10 AM · MITK (2020)
floca closed T27621: [Segmentation] 3D Threshold / UL Threshold does not use a timestep != 0 for static masks, a subtask of T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation, as Resolved.
Wed, Aug 5, 11:10 AM · Missing Info, Restricted Project, MITK (2020)
floca closed T27621: [Segmentation] 3D Threshold / UL Threshold does not use a timestep != 0 for static masks as Resolved.
Wed, Aug 5, 11:10 AM · Restricted Project, Cleared, MITK (2020)
floca closed T27622: [Segmentation] Make 3D Threshold / UL Threshold only for on a single timestep for a dynamic mask, a subtask of T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation, as Resolved.
Wed, Aug 5, 11:10 AM · Missing Info, Restricted Project, MITK (2020)
floca closed T27622: [Segmentation] Make 3D Threshold / UL Threshold only for on a single timestep for a dynamic mask as Resolved.
Wed, Aug 5, 11:10 AM · Restricted Project, Cleared, MITK (2020)
gaoh added a member for SIDT: s669m.
Wed, Aug 5, 10:22 AM
gaoh added a member for d:cipher: s669m.
Wed, Aug 5, 10:21 AM
floca committed rMITK08619e4fc4b8: T27621/T27622 - Corrected threshold tools (authored by floca).
T27621/T27622 - Corrected threshold tools
Wed, Aug 5, 10:20 AM
floca committed rMITK5f96821de19f: Fixed review remarks. (authored by floca).
Fixed review remarks.
Wed, Aug 5, 10:20 AM
floca committed rMITKc03ca0616159: Handeled unused variables (gcc error) (authored by floca).
Handeled unused variables (gcc error)
Wed, Aug 5, 10:20 AM
floca committed rMITK4408a8ff26b0: Removed unnecessary call (authored by floca).
Removed unnecessary call
Wed, Aug 5, 10:20 AM
floca committed rMITK703af31f270f: Refactored threshold tools to remove redundant code (authored by floca).
Refactored threshold tools to remove redundant code
Wed, Aug 5, 10:20 AM
floca committed rMITKb9bfb2ec4e41: Corrected mitk::AutoSegmentationTool::GetTargetSegmentationNode() to use the… (authored by floca).
Corrected mitk::AutoSegmentationTool::GetTargetSegmentationNode() to use the…
Wed, Aug 5, 10:20 AM
floca committed rMITK179b53dfa7bb: Improved usablility of threshold tools (authored by floca).
Improved usablility of threshold tools
Wed, Aug 5, 10:20 AM
floca committed rMITK13895dc2f6b7: first draft of threshold tool that behaves correctly time point aware now. (authored by floca).
first draft of threshold tool that behaves correctly time point aware now.
Wed, Aug 5, 10:20 AM
floca committed rMITK83f54f57a53c: Add (event) support for current time point change to toolmanager (authored by floca).
Add (event) support for current time point change to toolmanager
Wed, Aug 5, 10:20 AM
kompan added a revision to T27619: MR Perfusion: Use model fit result relation rules for predicate definition: Unknown Object (Differential Revision).
Wed, Aug 5, 9:51 AM · Cleared, MITK (2020)
neher closed T27647: Fix dicom module renaming and rest module dep as Resolved.
Wed, Aug 5, 8:21 AM · MITK Diffusion
neher committed rMITKDIFF4bd1b5fe32b7: Merge branch 'T27647-DicomModuleFix' (authored by neher).
Merge branch 'T27647-DicomModuleFix'
Wed, Aug 5, 8:19 AM
neher committed rMITKDIFF29354b30dfdb: add dev breaking changes (authored by neher).
add dev breaking changes
Wed, Aug 5, 8:18 AM
neher added a comment to T27647: Fix dicom module renaming and rest module dep.

Pushed new branch T27647-DicomModuleFix.

Wed, Aug 5, 8:18 AM · MITK Diffusion

Tue, Aug 4

kislinsk added a comment to T25882: Figure out why CDash submissions to CDash 2.6 servers are not browsable.

Pushed new branch bugfix/T25882-RewriteDashboardScript.

Tue, Aug 4, 10:07 PM · CI, MITK (2020), Restricted Project
floca triaged T27649: [Segmentation] How should tools listen to time changes as Unbreak Now! priority.
Tue, Aug 4, 9:41 PM · MITK (2020)
floca reopened T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation as "Open".

@thomass / @kalali : what i just realized. Did you also checked the automated 2D tools (like fast marching 2D)? Or only the 3D tools?

Tue, Aug 4, 9:01 PM · Missing Info, Restricted Project, MITK (2020)
floca claimed T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.
Tue, Aug 4, 8:56 PM · MITK (2020), Bugzilla
floca moved T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images from Backlog to Segmentation on the MITK (2020) board.
Tue, Aug 4, 8:45 PM · MITK (2020), Bugzilla
floca raised the priority of T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images from Normal to High.
Tue, Aug 4, 8:45 PM · MITK (2020), Bugzilla
floca moved T27641: [Segmentation] Watershed does always generate a 3D static seg. Even if dynamic segmentation was generated. from Backlog to Segmentation on the MITK (2020) board.
Tue, Aug 4, 8:44 PM · Cleared, MITK (2020)
floca committed rMITKeed36131e0f8: T27117 Revised the docu of matchpoint.algorithm.control (authored by floca).
T27117 Revised the docu of matchpoint.algorithm.control
Tue, Aug 4, 5:19 PM
floca closed T27117: [MITKDoc] Revise Matchpoint Algorithm Control Plugin Documentation as Resolved by committing rMITKeed36131e0f8: T27117 Revised the docu of matchpoint.algorithm.control.
Tue, Aug 4, 5:19 PM · Cleared, MITK (2020)
floca added a revision to T27634: [Registration] Crash at application closure when Registration Manipulator or Evaluator is active: Unknown Object (Differential Revision).
Tue, Aug 4, 5:05 PM · MITK (2020)