Merge branch 'feature/T27396-RepresentSingleTaskChallengeAsMultiTaskChallenge'…
b5cdf4dadc19
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Merge branch 'feature/T27396-RepresentSingleTaskChallengeAsMultiTaskChallenge' into develop

Conflicts:
R/rankingHeatmap.R
inst/appdir/reportMultiple.Rmd
inst/appdir/reportMultipleShort.Rmd

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eisenman	Authored on Jun 22 2020, 7:25 PM
eisenman	Pushed on Jun 22 2020, 7:22 PM

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rCHALLENGER49e1418ef12f: Show explanation of algorithm ordering only for multi-task data set
rCHALLENGERf1524ebcaced: Add the description of blob plots for the short report on multiple tasks as it…

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eisenman committed rCHALLENGERb5cdf4dadc19: Merge branch 'feature/T27396-RepresentSingleTaskChallengeAsMultiTaskChallenge'… (authored by eisenman).Jun 22 2020, 7:25 PM

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49e1418ef12f Show explanation of algorithm ordering only for multi-task data set
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c4e1f3546b4f Show title of podium plot only for multi-task data sets
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d9becaa36315 Migrate reporting of top performing algorithms
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e687c165c83d Show task name in front of ranking list only for multi-task data sets
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8c4351c0aa88 Use task name as title for blob plot when it's not added by facet wrap
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a1f14731d11d Remove dead code
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476102d4602a Migrate extraction of task subset from bootstrap ranking
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075cc1785fbb Migrate extraction of task subset from ranking
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b2335241725b Test that extraction of bootstrap ranking subset returns more algorithms then…
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5b20ca4bffb4 Test that extraction of bootstrap ranking subset returns all algorithms even…
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47838643c974 Test that extraction of bootstrap ranking subset raises error for multi-task…
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09e57193c67d Migrate extraction of top performing algorithms from bootstrap ranking
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479fd58ca60e Test that extraction of subset returns more algorithms then requested when ties…
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411ef20371d2 Test that extraction of subset returns all algorithms even when more are…
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d5459ec81a45 Test that top performing algorithms are extracted and data set is reduced…
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28ca5db44b15 Migrate extraction of top performing algorithms
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0a0f1c61708a Make task name optional for single-task data set
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28a53885f53c Ensure that stacked bar plot for visualizing ranking stability by algorithm is…
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e87de5b18868 Ensure that blob plot for visualizing ranking stability by algorithm is only…
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2a5d152b852e Ensure that network plot is only created for at least three tasks
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2e5f5161f3b2 Add third task to trigger creation of cluster analysis plots
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f1a402e3946a Ensure that blob plot for visualizing ranking stability across tasks is only…
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34b55a87aabc Remove violin plot function used for single-task data set
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d58cc9b9e676 Show task names as tick mark labels only for multi-task data set in violin plot
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ea91a2adcbb8 Test that line plot across ranking methods returns one plot for single- and…
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f209976c312b Add option for showing blob plot label for visualizing ranking stability
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10d13f5001c0 Test that line plot across ranking methods has no title for single-task data set
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b05414b321b8 Remove single-task data set handling for line plots across ranking methods
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cc744ddd3c0f Remove significance map function used for single-task data set
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654ad17ac744 Test that significance map titles are set depending on single- or multi-task…
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9a3d0d68871c Remove significance map title for single-task data set
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c816ae8fc27f Remove ranking heatmap function used for single-task data set
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23771ce7f5cf Test that ranking heatmap titles are set depending on single- or multi-task…
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a1079f34da91 Remove ranking heatmap title for single-task data set
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e76a71df4c3f Remove boxplot function used for single-task data set
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fed508c8133d Test that boxplot titles are set depending on single- or multi-task data set
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f9e5997a7c9b Remove boxplot title for single-task data set
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48c2e17887e5 Test that reports for multi-task data set with bootstrapping are created
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e36073bb41d7 Test that reports for multi-task data set without bootstrapping are created
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9550cfc42ab9 Use default latex engine
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62bebafef38d Test that reports for single-task data set with bootstrapping are created
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20f344722355 Test that report for single-task data set without bootstrapping is created
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3a823f06d2f9 Find files when package is installed
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4c511e90e06e List overview of contained plots
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358c1201126c Adapt example for single-task data set
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2dccd31860f1 Remove report functionality used for single-task data sets
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7e95abdd4b64 Remove unused report files
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86ba2005a955 Extract report sections to separate files and include them depending on…
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56d572ce781b Move transformation to sanity check
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878b2d589204 Adapt ranking heatmap plot to multi-task data set format
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Changes (53)

Path

Size

inst/

appdir/

characterizationOfAlgorithmsBootstrapping.Rmd

characterizationOfTasksBootstrapping.Rmd

consensusRanking.Rmd

overviewMultiTaskBootstrapping.Rmd

overviewMultiTaskNoBootstrapping.Rmd

overviewSingleTaskBootstrapping.Rmd

overviewSingleTaskNoBootstrapping.Rmd

	reportMultiple.Rmd
	reportMultipleShort.Rmd

reportMultipleShort.Rmd

reportSingle.Rmd

reportSingleShort.Rmd

visualizationAcrossTasks.Rmd

visualizationBlobPlots.Rmd

visualizationViolinPlots.Rmd

tests/

testthat/

test-aggregateThenRank.R

test-blobPlotStabilityAcrossTasks.R

test-blobPlotStabilityByAlgorithm.R

test-blobPlotStabilityByTask.R

test-rankThenAggregate.R

test-rankingHeatmap.R

test-report.R

test-significanceMap.R

test-stackedBarPlotStabilityByAlgorithm.R

test-subset.R

test-taskSubset.R

test-violinPlot.R

rCHALLENGERb5cdf4dadc19

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NAMESPACE

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R/Aggregate.R

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R/AggregateList.R

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R/Bootstrap.R

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R/Rank.R

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R/Rank.aggregated.R

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R/aaggregate.R

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R/blobplot.ranked.R

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R/boxplot.R

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R/challengeR.R

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R/graph.R

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R/melt.R

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R/methodsplot.R

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R/podium.R

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R/rankingHeatmap.R

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R/report.R

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R/rrank.R

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R/significancePlot.R

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R/subset.R

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R/violin.R

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R/visualization.R

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README.md

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Readme.Rmd

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inst/appdir/characterizationOfAlgorithmsBootstrapping.Rmd

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inst/appdir/characterizationOfTasksBootstrapping.Rmd

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inst/appdir/consensusRanking.Rmd

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inst/appdir/overviewMultiTaskBootstrapping.Rmd

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inst/appdir/overviewMultiTaskNoBootstrapping.Rmd

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inst/appdir/overviewSingleTaskBootstrapping.Rmd

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inst/appdir/overviewSingleTaskNoBootstrapping.Rmd

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inst/appdir/reportMultiple.Rmd

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inst/appdir/reportMultipleShort.Rmd

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inst/appdir/reportSingle.Rmd

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inst/appdir/reportSingleShort.Rmd

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inst/appdir/visualizationAcrossTasks.Rmd

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inst/appdir/visualizationBlobPlots.Rmd

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inst/appdir/visualizationViolinPlots.Rmd

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tests/testthat/test-aggregateThenRank.R

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tests/testthat/test-blobPlotStabilityAcrossTasks.R

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tests/testthat/test-blobPlotStabilityByAlgorithm.R

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tests/testthat/test-blobPlotStabilityByTask.R

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tests/testthat/test-boxplot.R

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tests/testthat/test-challenge.R

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tests/testthat/test-linePlot.R

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tests/testthat/test-networkPlot.R

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tests/testthat/test-rankThenAggregate.R

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tests/testthat/test-rankingHeatmap.R

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tests/testthat/test-report.R

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tests/testthat/test-significanceMap.R

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tests/testthat/test-stackedBarPlotStabilityByAlgorithm.R

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tests/testthat/test-subset.R

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tests/testthat/test-taskSubset.R

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tests/testthat/test-violinPlot.R

Merge branch 'feature/T27396-RepresentSingleTaskChallengeAsMultiTaskChallenge'…b5cdf4dadc19Actions

Description

Details

Event Timeline

Merged Changes

Changes (53)

rCHALLENGERb5cdf4dadc19

NAMESPACE

R/Aggregate.R

R/AggregateList.R

R/Bootstrap.R

R/Rank.R

R/Rank.aggregated.R

R/aaggregate.R

R/blobplot.ranked.R

R/boxplot.R

R/challengeR.R

R/graph.R

R/melt.R

R/methodsplot.R

R/podium.R

R/rankingHeatmap.R

R/report.R

R/rrank.R

R/significancePlot.R

R/subset.R

R/violin.R

R/visualization.R

README.md

Readme.Rmd

inst/appdir/characterizationOfAlgorithmsBootstrapping.Rmd

inst/appdir/characterizationOfTasksBootstrapping.Rmd

inst/appdir/consensusRanking.Rmd

inst/appdir/overviewMultiTaskBootstrapping.Rmd

inst/appdir/overviewMultiTaskNoBootstrapping.Rmd

inst/appdir/overviewSingleTaskBootstrapping.Rmd

inst/appdir/overviewSingleTaskNoBootstrapping.Rmd

inst/appdir/reportMultiple.Rmd

inst/appdir/reportMultipleShort.Rmd

inst/appdir/reportSingle.Rmd

inst/appdir/reportSingleShort.Rmd

inst/appdir/visualizationAcrossTasks.Rmd

inst/appdir/visualizationBlobPlots.Rmd

inst/appdir/visualizationViolinPlots.Rmd

tests/testthat/test-aggregateThenRank.R

tests/testthat/test-blobPlotStabilityAcrossTasks.R

tests/testthat/test-blobPlotStabilityByAlgorithm.R

tests/testthat/test-blobPlotStabilityByTask.R

tests/testthat/test-boxplot.R

tests/testthat/test-challenge.R

tests/testthat/test-linePlot.R

tests/testthat/test-networkPlot.R

tests/testthat/test-rankThenAggregate.R

tests/testthat/test-rankingHeatmap.R

tests/testthat/test-report.R

tests/testthat/test-significanceMap.R

tests/testthat/test-stackedBarPlotStabilityByAlgorithm.R

tests/testthat/test-subset.R

tests/testthat/test-taskSubset.R

tests/testthat/test-violinPlot.R

Merge branch 'feature/T27396-RepresentSingleTaskChallengeAsMultiTaskChallenge'…
b5cdf4dadc19
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