Diffusion MITK 0ee3c00f9c14

Merge branch 'bug-18103-Integration2'
0ee3c00f9c14
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Merge branch 'bug-18103-Integration2'

Conflicts:
Modules/DiffusionImaging/MiniApps/files.cmake

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Authored on Oct 10 2014, 3:31 PM

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rMITK21452069158c: Merge branch 'bug-18103-Integration' into bug-18103-Integration2
rMITK21df791cf6df: Merge branch 'bug-18251-ApplyVTKPatch'

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neher committed rMITK0ee3c00f9c14: Merge branch 'bug-18103-Integration2' (authored by neher).Oct 10 2014, 3:31 PM

Merged Changes

21452069158c Merge branch 'bug-18103-Integration' into bug-18103-Integration2
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1166a23d6365 Merge branch 'bug-18103-FiberGeometry' into bug-18103-Integration
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7bf35d4a6605 adapted test data
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68b362ba32cd fiber geometry compatible with trackvis
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48bac81ecb4a added miniapp file
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51ffffc8eb0a added miniapp to calculate tractometer metrics
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25483a182680 applying transform after loading
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3cce77512c95 wip
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18b3501cb27a silence miniapps
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a09c96753c21 peak extraction mod
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Changes (38)

Path

Size

Packages

CMakeExternals/

O1: MITK Reviewer Group I

Modules/

DiffusionImaging/

DiffusionCore/

Algorithms/

Reconstruction/

itkAnalyticalDiffusionQballReconstructionImageFilter.cpp

itkFiniteDiffOdfMaximaExtractionFilter.cpp

FiberTracking/

Algorithms/

itkStreamlineTrackingFilter.cpp

IODataStructures/

FiberBundleX/

mitkFiberBundleX.cpp

mitkFiberBundleX.h

mitkFiberBundleXReader.cpp

mitkFiberBundleXReader.h

mitkFiberBundleXWriter.cpp

mitkTrackvis.cpp

MiniApps/

CopyGeometry.cpp

DiffusionIndices.cpp

DwiDenoising.cpp

ExportShImage.cpp

FiberDirectionExtraction.cpp

FiberExtraction.cpp

FiberProcessing.cpp

FileFormatConverter.cpp

GibbsTracking.cpp

LocalDirectionalFiberPlausibility.cpp

MultishellMethods.cpp

PeakExtraction.cpp

PeaksAngularError.cpp

QballReconstruction.cpp

StreamlineTracking.cpp

TensorDerivedMapsExtraction.cpp

TensorReconstruction.cpp

TractogramAngularError.cpp

TractometerMetrics.cpp

Plugins/

org.mitk.gui.qt.diffusionimaging/

src/

internal/

QmitkGibbsTrackingView.cpp

QmitkOdfMaximaExtractionViewControls.ui

QmitkStochasticFiberTrackingView.cpp

QmitkStreamlineTrackingView.cpp

QmitkStreamlineTrackingViewControls.ui

rMITK0ee3c00f9c14

CMakeExternals/MITKData.cmake

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Modules/DiffusionImaging/DiffusionCore/Algorithms/Reconstruction/itkAnalyticalDiffusionQballReconstructionImageFilter.cpp

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Modules/DiffusionImaging/DiffusionCore/Algorithms/itkFiniteDiffOdfMaximaExtractionFilter.cpp

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Modules/DiffusionImaging/FiberTracking/Algorithms/itkStreamlineTrackingFilter.cpp

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Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundleX/mitkFiberBundleX.cpp

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Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundleX/mitkFiberBundleX.h

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Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundleX/mitkFiberBundleXReader.cpp

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Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundleX/mitkFiberBundleXReader.h

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Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundleX/mitkFiberBundleXWriter.cpp

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Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundleX/mitkTrackvis.cpp

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Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundleX/mitkTrackvis.h

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Modules/DiffusionImaging/MiniApps/CMakeLists.txt

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Modules/DiffusionImaging/MiniApps/CopyGeometry.cpp

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Modules/DiffusionImaging/MiniApps/DiffusionIndices.cpp

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Modules/DiffusionImaging/MiniApps/DwiDenoising.cpp

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Modules/DiffusionImaging/MiniApps/ExportShImage.cpp

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Modules/DiffusionImaging/MiniApps/FiberDirectionExtraction.cpp

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Modules/DiffusionImaging/MiniApps/FiberExtraction.cpp

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Modules/DiffusionImaging/MiniApps/FiberProcessing.cpp

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Modules/DiffusionImaging/MiniApps/Fiberfox.cpp

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Modules/DiffusionImaging/MiniApps/FileFormatConverter.cpp

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Modules/DiffusionImaging/MiniApps/GibbsTracking.cpp

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Modules/DiffusionImaging/MiniApps/LocalDirectionalFiberPlausibility.cpp

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Modules/DiffusionImaging/MiniApps/MultishellMethods.cpp

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Modules/DiffusionImaging/MiniApps/PeakExtraction.cpp

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Modules/DiffusionImaging/MiniApps/PeaksAngularError.cpp

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Modules/DiffusionImaging/MiniApps/QballReconstruction.cpp

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Modules/DiffusionImaging/MiniApps/StreamlineTracking.cpp

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Modules/DiffusionImaging/MiniApps/TensorDerivedMapsExtraction.cpp

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Modules/DiffusionImaging/MiniApps/TensorReconstruction.cpp

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Modules/DiffusionImaging/MiniApps/TractogramAngularError.cpp

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Modules/DiffusionImaging/MiniApps/TractometerMetrics.cpp

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Modules/DiffusionImaging/MiniApps/files.cmake

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Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkGibbsTrackingView.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkOdfMaximaExtractionViewControls.ui

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Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkStochasticFiberTrackingView.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkStreamlineTrackingView.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkStreamlineTrackingViewControls.ui

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