Merge branch 'T23211-FiberPlausibSubtract'
11a0a991fd02
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Description

Merge branch 'T23211-FiberPlausibSubtract'

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Provenance

neher	Authored on Oct 26 2017, 8:57 AM
neher	Pushed on Oct 26 2017, 8:55 AM

Parents

rMITK45adbfcc5127: Cleanup
rMITK60a912549e49: Merge branch 'T23592-MatchPointRegistrationOFF'

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neher committed rMITK11a0a991fd02: Merge branch 'T23211-FiberPlausibSubtract' (authored by neher).Oct 26 2017, 8:57 AM

Merged Changes

45adbfcc5127 Cleanup
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neher
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25f71213bde9 Refactor fiber plausibility cmdapp
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neher
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769bad9b8790 Count voxels as reference score
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neher
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f37bd9619f99 Enable single fit fiber filter
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neher
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5f5577986946 Don't update peak iamge in every iteration
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neher
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4ba40abc7f75 Skip fixed number of known tracts
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neher
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02ca425384de Implement greedy subtraction plausibility.
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Changes (27)

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Size

Packages

Applications/

Diffusion/

CMakeLists.txt

target_libraries.cmake

CMake/

BuildConfigurations/

	DiffusionAll.cmake
	mitkDiffusion.cmake

O1: MITK Reviewer Group I

mitkDiffusion.cmake

O1: MITK Reviewer Group I

Modules/

DiffusionImaging/

DiffusionIO/

mitkFiberBundleTckReader.cpp

mitkFiberBundleTrackVisReader.cpp

mitkFiberBundleVtkReader.cpp

FiberTracking/

Algorithms/

itkFiberCurvatureFilter.h

itkFitFibersToImageFilter.cpp

itkFitFibersToImageFilter.h

itkTractDensityImageFilter.cpp

itkTractDensityImageFilter.h

IODataStructures/

FiberBundle/

mitkFiberBundle.cpp

mitkFiberBundle.h

mitkTrackvis.cpp

cmdapps/

FiberProcessing/

FitFibersToImage.cpp

TractographyEvaluation/

AnchorBasedScoring.cpp

CMakeLists.txt

EvaluateLiFE.cpp

ExtractAnchorTracts.cpp

MergeOverlappingTracts.cpp

TractPlausibility.cpp

TractPlausibilityFit.cpp

Plugins/

org.mitk.gui.qt.diffusionimaging.fiberprocessing/

documentation/

UserManual/

QmitkFiberProcessingViewUserManual.dox

src/

internal/

QmitkFiberProcessingView.cpp

QmitkFiberProcessingView.h

QmitkFiberProcessingViewControls.ui

rMITK11a0a991fd02

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Applications/Diffusion/CMakeLists.txt

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Applications/Diffusion/target_libraries.cmake

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CMake/BuildConfigurations/DiffusionAll.cmake

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CMake/BuildConfigurations/mitkDiffusion.cmake

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Modules/DiffusionImaging/DiffusionIO/mitkFiberBundleTckReader.cpp

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Modules/DiffusionImaging/DiffusionIO/mitkFiberBundleTrackVisReader.cpp

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Modules/DiffusionImaging/DiffusionIO/mitkFiberBundleVtkReader.cpp

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Modules/DiffusionImaging/FiberTracking/Algorithms/itkFiberCurvatureFilter.h

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Modules/DiffusionImaging/FiberTracking/Algorithms/itkFitFibersToImageFilter.cpp

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Modules/DiffusionImaging/FiberTracking/Algorithms/itkFitFibersToImageFilter.h

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Modules/DiffusionImaging/FiberTracking/Algorithms/itkTractDensityImageFilter.cpp

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Modules/DiffusionImaging/FiberTracking/Algorithms/itkTractDensityImageFilter.h

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Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundle/mitkFiberBundle.cpp

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Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundle/mitkFiberBundle.h

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Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundle/mitkTrackvis.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FitFibersToImage.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/AnchorBasedScoring.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/CMakeLists.txt

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/EvaluateLiFE.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/ExtractAnchorTracts.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/MergeOverlappingTracts.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/TractPlausibility.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/TractPlausibilityFit.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/documentation/UserManual/QmitkFiberProcessingViewUserManual.dox

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingView.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingView.h

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingViewControls.ui

Merge branch 'T23211-FiberPlausibSubtract'11a0a991fd02Actions

Description

Details

Event Timeline

Merged Changes

Changes (27)

rMITK11a0a991fd02

Applications/Diffusion/CMakeLists.txt

Applications/Diffusion/target_libraries.cmake

CMake/BuildConfigurations/DiffusionAll.cmake

CMake/BuildConfigurations/mitkDiffusion.cmake

Modules/DiffusionImaging/DiffusionIO/mitkFiberBundleTckReader.cpp

Modules/DiffusionImaging/DiffusionIO/mitkFiberBundleTrackVisReader.cpp

Modules/DiffusionImaging/DiffusionIO/mitkFiberBundleVtkReader.cpp

Modules/DiffusionImaging/FiberTracking/Algorithms/itkFiberCurvatureFilter.h

Modules/DiffusionImaging/FiberTracking/Algorithms/itkFitFibersToImageFilter.cpp

Modules/DiffusionImaging/FiberTracking/Algorithms/itkFitFibersToImageFilter.h

Modules/DiffusionImaging/FiberTracking/Algorithms/itkTractDensityImageFilter.cpp

Modules/DiffusionImaging/FiberTracking/Algorithms/itkTractDensityImageFilter.h

Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundle/mitkFiberBundle.cpp

Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundle/mitkFiberBundle.h

Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundle/mitkTrackvis.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FitFibersToImage.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/AnchorBasedScoring.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/CMakeLists.txt

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/EvaluateLiFE.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/ExtractAnchorTracts.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/MergeOverlappingTracts.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/TractPlausibility.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/TractPlausibilityFit.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/documentation/UserManual/QmitkFiberProcessingViewUserManual.dox

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingView.h

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingViewControls.ui

Merge branch 'T23211-FiberPlausibSubtract'
11a0a991fd02
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