Merge branch 'T22228-PAplugin' into T22228-PApluginIntegrationSeptember
2fac215c038c
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Merge branch 'T22228-PAplugin' into T22228-PApluginIntegrationSeptember

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• kirchnth	Authored on Sep 21 2017, 11:56 AM
• kirchnth	Pushed on Sep 21 2017, 12:49 PM

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rMITK451a1e9ffa6b: removed gcc compile warning
rMITK95bdc89ce841: Merge branch 'T22919-catch-exception'

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• kirchnth committed rMITK2fac215c038c: Merge branch 'T22228-PAplugin' into T22228-PApluginIntegrationSeptember (authored by • kirchnth).Sep 21 2017, 11:56 AM

Merged Changes

451a1e9ffa6b removed gcc compile warning
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• kirchnth
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ae3124301393 Merge branch 'T23200-fixOCLinconsistencies' into T22228-PAplugin
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3964e5c4d806 Greatly increased performance by: selectively recreating buffers only when…
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• sattler
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705e9a0edd06 some refactoring, changed the directory structure of the module
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b9fa56964f15 got rid of quite a bit of unneccesary overhead in the openCL calculations some…
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3c3e8974973e this fixes the random factor 10 difference CPU/GPU issue of T23200
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aa3fdf080baa Merge branch 'T23200-fixOCLinconsistencies' into T22228-PAplugin
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16d73513e5bd finished refactoring
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a850dc5e7ac6 seperated the DMAS filter into several stages to speedup and selectively…
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a18f5d517a39 fixes T23374 and minor refactoring cleanup
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4fc3ccfdb47d find openCL under linux automatically (tested for cuda)
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856bc88dd1db the usedLinesCalculation should now work; also small fix in base class, so that…
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5c4915fd8db4 made DataSetToDataSetFilter openCL base class a bit more flexible
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d1bfe990dfca Got Rid of unnecessary resampling before beamforming
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804d4a73c44e small GUI fixes
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6a3f3477952a the chunking is now actually done when bramforming an image fixed DMAS Algorithm
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6bb487ab151f removing chunking in beamformer and refactoring wip on T23200
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5c0cd94233e3 adding a method to compute chunks on a volume already placed on the gpu memory
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c57c955907cf Merge branch 'T22228-PAplugin' of https://phabricator.mitk.org/source/mitk into…
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9943f78c5df6 removed warning-as-error cause by init order by gcc
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bb3c8a7bb9d2 it is now possible to switch the usage of the GPU when using the BMode Filter…
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e43c8a821bfd include typo fix
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c53f01685b51 fixed warnings due to unused variables in cpu only builds
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100a11c668f8 rewrote the Bmode filter as a DataSetToDataSetOclFilter
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c744466a2b82 set chunk size to 1 in beamformer
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f76b65734ce5 the BMode Filter needed a GPU-less alternative, which has been written
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0d041e153ff2 openCL is now completely optional
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0c782c01f0e5 Made openCL optional in CMAKE
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8ab8fd1a6cf8 added a build config for the cami photoacoustic workstation
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6c62f58e966e removed the cutoff to 4096 pixels height, as it is not needed anymore
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6c175d1f3b82 -fixed some buffer creation/writing errors with openCL -rewrote the beamformer…
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f2de8ac7bf82 The DataSet implementation in OCL works now wih a small fix for memory access…
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7ec73acace48 Created Base Classes for processing of arbitrary non-image datasets on GPU…
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c0e29d46502e The SpeedOfSound settings in the GUI now both change if one is modified
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2dbf727e3f0b Single Slice images should work now
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99200d73c5e0 Merge branch 'master' into T22228-PAplugin
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2c2a9bdf669d Merge branch 'T22228-PAplugin' of https://phabricator.mitk.org/source/mitk into…
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e2cb6ef65b23 number of decimals set to 3
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Changes (128)
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Path

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Packages

CMake/

BuildConfigurations/

camiPhotoacousticsWorkstation.cmake

O1: MITK Reviewer Group I

FindOpenCL.cmake

O1: MITK Reviewer Group I

Modules/

OpenCL/

files.cmake

mitkOclDataSet.cpp

mitkOclDataSet.h

mitkOclDataSetFilter.cpp

mitkOclDataSetFilter.h

mitkOclDataSetToDataSetFilter.cpp

mitkOclDataSetToDataSetFilter.h

mitkOclFilter.cpp

mitkOclFilter.h

mitkOclImageToImageFilter.cpp

mitkOclUtils.cpp

PhotoacousticsAlgorithms/

itkAnalyticSignalImageFilter.h

itkAnalyticSignalImageFilter.hxx

itkBModeImageFilter.h

itkBModeImageFilter.hxx

itkCurvilinearArraySpecialCoordinatesImage.h

itkCurvilinearArraySpecialCoordinatesImage.hxx

itkFFT1DComplexConjugateToRealImageFilter.h

itkFFT1DComplexConjugateToRealImageFilter.hxx

itkFFT1DComplexToComplexImageFilter.h

itkFFT1DComplexToComplexImageFilter.hxx

itkFFT1DRealToComplexConjugateImageFilter.h

itkFFT1DRealToComplexConjugateImageFilter.hxx

itkRegionFromReferenceImageFilter.h

itkRegionFromReferenceImageFilter.hxx

itkSpectra1DImageFilter.h

itkSpectra1DImageFilter.hxx

itkSpectra1DSupportWindowImageFilter.h

itkSpectra1DSupportWindowImageFilter.hxx

itkSpectra1DSupportWindowToMaskImageFilter.h

itkSpectra1DSupportWindowToMaskImageFilter.hxx

itkTimeGainCompensationImageFilter.h

itkTimeGainCompensationImageFilter.hxx

itkVnlFFT1DComplexConjugateToRealImageFilter.h

itkVnlFFT1DComplexConjugateToRealImageFilter.hxx

itkVnlFFT1DComplexToComplexImageFilter.h

itkVnlFFT1DComplexToComplexImageFilter.hxx

itkVnlFFT1DRealToComplexConjugateImageFilter.h

itkVnlFFT1DRealToComplexConjugateImageFilter.hxx

OCL

mitkPhotoacousticBModeFilter.cpp

mitkPhotoacousticBModeFilter.h

mitkPhotoacousticOCLBeamformer.cpp

mitkPhotoacousticOCLBeamformer.h

itkPhotoacousticBModeImageFilter.h

itkPhotoacousticBModeImageFilter.hxx

mitkPhotoacousticBeamformingFilter.cpp

mitkPhotoacousticBeamformingFilter.h

CMakeLists.txt

ITKFilter

	ITKFilter/
	Algorithms/

ITKUltrasound

LICENSE

README.rst

itkAnalyticSignalImageFilter.h

itkAnalyticSignalImageFilter.hxx

itkBModeImageFilter.h

itkBModeImageFilter.hxx

itkCurvilinearArraySpecialCoordinatesImage.h

itkCurvilinearArraySpecialCoordinatesImage.hxx

itkFFT1DComplexConjugateToRealImageFilter.h

itkFFT1DComplexConjugateToRealImageFilter.hxx

itkFFT1DComplexToComplexImageFilter.h

itkFFT1DComplexToComplexImageFilter.hxx

itkFFT1DRealToComplexConjugateImageFilter.h

itkFFT1DRealToComplexConjugateImageFilter.hxx

itkRegionFromReferenceImageFilter.h

itkRegionFromReferenceImageFilter.hxx

itkSpectra1DImageFilter.h

itkSpectra1DImageFilter.hxx

itkSpectra1DSupportWindowImageFilter.h

itkSpectra1DSupportWindowImageFilter.hxx

itkSpectra1DSupportWindowToMaskImageFilter.h

itkSpectra1DSupportWindowToMaskImageFilter.hxx

itkTimeGainCompensationImageFilter.h

itkTimeGainCompensationImageFilter.hxx

itkVnlFFT1DComplexConjugateToRealImageFilter.h

itkVnlFFT1DComplexConjugateToRealImageFilter.hxx

itkVnlFFT1DComplexToComplexImageFilter.h

itkVnlFFT1DComplexToComplexImageFilter.hxx

itkVnlFFT1DRealToComplexConjugateImageFilter.h

itkVnlFFT1DRealToComplexConjugateImageFilter.hxx

itkPhotoacousticBModeImageFilter.h

itkPhotoacousticBModeImageFilter.hxx

Resources/

	DASSpherical.cl
	DASspherical.cl

DASspherical.cl

DMAS.cl

DMASQuadratic.cl

	DMASSpherical.cl
	DMASspherical.cl

DMASspherical.cl

DelayCalculation.cl

MemoryLocSum.cl

UsedLinesCalculation.cl

files.cmake

include

OpenCLFilter

mitkPhotoacousticBModeFilter.h

mitkPhotoacousticBeamformingSettings.h

	include/
	Algorithms/

	OpenCLFilter/
	OCL/

	mitkPhotoacousticOCLBeamformingFilter.h
	mitkPhotoacousticOCLBeamformer.h

	mitkPhotoacousticOCLDelayCalculation.h
	mitkPhotoacousticBModeFilter.h

	mitkPhotoacousticOCLMemoryLocSum.h
	mitkPhotoacousticBModeFilter.h

	mitkPhotoacousticOCLUsedLinesCalculation.h
	mitkPhotoacousticBModeFilter.h

mitkPhotoacousticBeamformingFilter.h

	include/

mitkPhotoacousticImage.h

mitkPhotoacousticImage.cpp

mitkPhotoacousticImage.h

source

OpenCLFilter

mitkPhotoacousticBModeFilter.cpp

mitkPhotoacousticOCLBeamformingFilter.cpp

mitkPhotoacousticOCLDelayCalculation.cpp

mitkPhotoacousticOCLMemoryLocSum.cpp

mitkPhotoacousticOCLUsedLinesCalculation.cpp

	source/
	Algorithms/

mitkPhotoacousticBeamformingFilter.cpp

	source/

mitkPhotoacousticImage.cpp

Plugins/

org.mitk.gui.qt.photoacoustics.imageprocessing/

CMakeLists.txt

src/

internal/

PAImageProcessing.cpp

PAImageProcessing.h

PAImageProcessingControls.ui

rMITK2fac215c038c

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CMake/FindOpenCL.cmake

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Modules/OpenCL/files.cmake

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Modules/OpenCL/mitkOclDataSet.cpp

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Modules/OpenCL/mitkOclFilter.h

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Modules/OpenCL/mitkOclUtils.cpp

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Modules/PhotoacousticsAlgorithms/Algorithms

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Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/LICENSE

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Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/README.rst

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Plugins/org.mitk.gui.qt.photoacoustics.imageprocessing/CMakeLists.txt

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Plugins/org.mitk.gui.qt.photoacoustics.imageprocessing/src/internal/PAImageProcessing.cpp

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Plugins/org.mitk.gui.qt.photoacoustics.imageprocessing/src/internal/PAImageProcessing.h

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Plugins/org.mitk.gui.qt.photoacoustics.imageprocessing/src/internal/PAImageProcessingControls.ui

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Merge branch 'T22228-PAplugin' into T22228-PApluginIntegrationSeptember2fac215c038cActions

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rMITK2fac215c038c

CMake/BuildConfigurations/camiPhotoacousticsWorkstation.cmake

CMake/FindOpenCL.cmake

Modules/OpenCL/files.cmake

Modules/OpenCL/mitkOclDataSet.cpp

Modules/OpenCL/mitkOclDataSet.h

Modules/OpenCL/mitkOclDataSetFilter.cpp

Modules/OpenCL/mitkOclDataSetFilter.h

Modules/OpenCL/mitkOclDataSetToDataSetFilter.cpp

Modules/OpenCL/mitkOclDataSetToDataSetFilter.h

Modules/OpenCL/mitkOclFilter.cpp

Modules/OpenCL/mitkOclFilter.h

Modules/OpenCL/mitkOclImageToImageFilter.cpp

Modules/OpenCL/mitkOclUtils.cpp

Modules/PhotoacousticsAlgorithms/Algorithms

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/LICENSE

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/README.rst

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkAnalyticSignalImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkAnalyticSignalImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkBModeImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkBModeImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkCurvilinearArraySpecialCoordinatesImage.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkCurvilinearArraySpecialCoordinatesImage.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkFFT1DComplexConjugateToRealImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkFFT1DComplexConjugateToRealImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkFFT1DComplexToComplexImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkFFT1DComplexToComplexImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkFFT1DRealToComplexConjugateImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkFFT1DRealToComplexConjugateImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkRegionFromReferenceImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkRegionFromReferenceImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkSpectra1DImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkSpectra1DImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkSpectra1DSupportWindowImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkSpectra1DSupportWindowImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkSpectra1DSupportWindowToMaskImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkSpectra1DSupportWindowToMaskImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkTimeGainCompensationImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkTimeGainCompensationImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkVnlFFT1DComplexConjugateToRealImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkVnlFFT1DComplexConjugateToRealImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkVnlFFT1DComplexToComplexImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkVnlFFT1DComplexToComplexImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkVnlFFT1DRealToComplexConjugateImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkVnlFFT1DRealToComplexConjugateImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/OCL

Modules/PhotoacousticsAlgorithms/Algorithms/OCL/mitkPhotoacousticBModeFilter.cpp

Modules/PhotoacousticsAlgorithms/Algorithms/OCL/mitkPhotoacousticBModeFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/OCL/mitkPhotoacousticOCLBeamformer.cpp

Modules/PhotoacousticsAlgorithms/Algorithms/OCL/mitkPhotoacousticOCLBeamformer.h

Modules/PhotoacousticsAlgorithms/Algorithms/itkPhotoacousticBModeImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/itkPhotoacousticBModeImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/mitkPhotoacousticBeamformingFilter.cpp

Modules/PhotoacousticsAlgorithms/Algorithms/mitkPhotoacousticBeamformingFilter.h

Modules/PhotoacousticsAlgorithms/CMakeLists.txt

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/LICENSE

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/README.rst

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkAnalyticSignalImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkAnalyticSignalImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkBModeImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkBModeImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkCurvilinearArraySpecialCoordinatesImage.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkCurvilinearArraySpecialCoordinatesImage.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DComplexConjugateToRealImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DComplexConjugateToRealImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DComplexToComplexImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DComplexToComplexImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DRealToComplexConjugateImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DRealToComplexConjugateImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkRegionFromReferenceImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkRegionFromReferenceImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkSpectra1DImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkSpectra1DImageFilter.hxx

Merge branch 'T22228-PAplugin' into T22228-PApluginIntegrationSeptember
2fac215c038c
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