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kirchnth (Thomas Kirchner)
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User Since
Aug 1 2016, 12:10 PM (123 w, 1 d)

Recent Activity

Sep 17 2018

kirchnth added a comment to T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04].

is the local oigtl zipped source files in that last commit

Sep 17 2018, 2:16 PM · Photoacoustics, Restricted Project, IGT, MITK

Sep 14 2018

kirchnth committed rMITKd78ede1444c1: new ansatz to fix T24778 oitgl release 3 doesnt install as is (but only on… (authored by kirchnth).
new ansatz to fix T24778 oitgl release 3 doesnt install as is (but only on…
Sep 14 2018, 4:00 PM
kirchnth added a comment to T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04].

Pushed new branch T24778--update-oigtl-to-current-master.

Sep 14 2018, 3:59 PM · Photoacoustics, Restricted Project, IGT, MITK

Sep 13 2018

kirchnth moved T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04] from Backlog to wip on the Photoacoustics board.
Sep 13 2018, 2:07 PM · Photoacoustics, Restricted Project, IGT, MITK

Sep 7 2018

kirchnth added a comment to T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04].

@franza yes i had the same problem - i did not get around to have a close look at it yet :/

Sep 7 2018, 12:36 PM · Photoacoustics, Restricted Project, IGT, MITK

Aug 13 2018

groehl awarded T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04] a The World Burns token.
Aug 13 2018, 1:31 PM · Photoacoustics, Restricted Project, IGT, MITK
groehl awarded T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04] a The World Burns token.
Aug 13 2018, 1:30 PM · Photoacoustics, Restricted Project, IGT, MITK

Jul 24 2018

kirchnth moved T25122: PA Bandpass shifts images for each slice a bit more from Backlog to wip on the Photoacoustics board.
Jul 24 2018, 1:48 PM · MITK, Photoacoustics

Jul 23 2018

kirchnth added a parent task for T24679: Motion compensation for PAUS imaging: Unknown Object (Maniphest Task).
Jul 23 2018, 8:13 PM · MITK, Photoacoustics
kirchnth added a parent task for T25122: PA Bandpass shifts images for each slice a bit more: Unknown Object (Maniphest Task).
Jul 23 2018, 8:12 PM · MITK, Photoacoustics
kirchnth triaged T25122: PA Bandpass shifts images for each slice a bit more as Normal priority.
Jul 23 2018, 8:11 PM · MITK, Photoacoustics
kirchnth added a comment to T24679: Motion compensation for PAUS imaging.

@adler is this finished and merged back to the master?

Jul 23 2018, 3:01 PM · MITK, Photoacoustics
kirchnth closed T23538: Annotation Rendering Tests fail as Resolved.

old and obsolete task

Jul 23 2018, 2:53 PM · Restricted Project, MITK

Jul 11 2018

kirchnth committed rMITK3125db623bed: fixed build warnings/errors for gcc (authored by kirchnth).
fixed build warnings/errors for gcc
Jul 11 2018, 4:21 PM

Jul 2 2018

kirchnth committed rMITK3c252649449d: Merge branch 'T25018-memoryfix' (authored by kirchnth).
Merge branch 'T25018-memoryfix'
Jul 2 2018, 2:21 PM
kirchnth committed rMITKa9db46002c1d: this fixes a memory leak (authored by kirchnth).
this fixes a memory leak
Jul 2 2018, 2:20 PM

Jun 25 2018

kirchnth added a comment to T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04].

@kislinsk can you upload https://github.com/openigtlink/OpenIGTLink/archive/v3.0.tar.gz under the name OpenIGTLink-release-3.0.tar.gz please?
cf. T24971

Jun 25 2018, 6:54 PM · Photoacoustics, Restricted Project, IGT, MITK
kirchnth lowered the priority of T24971: .zip files do not extract in superbuild (Windows non-NTFS file system) from High to Low.

fixed it there but i'll leave it open because it remains a general issue

Jun 25 2018, 3:26 PM · Restricted Project, IGT, MITK
kirchnth updated subscribers of T24971: .zip files do not extract in superbuild (Windows non-NTFS file system).
Jun 25 2018, 3:10 PM · Restricted Project, IGT, MITK
kirchnth renamed T24971: .zip files do not extract in superbuild (Windows non-NTFS file system) from openCV does not extract in superbuild (Windows) to .zip files do not extract in superbuild (Windows non-NTFS file system).
Jun 25 2018, 3:10 PM · Restricted Project, IGT, MITK
kirchnth added a comment to T24971: .zip files do not extract in superbuild (Windows non-NTFS file system).

with the .tar.gz and new hash it works

Jun 25 2018, 3:09 PM · Restricted Project, IGT, MITK
kirchnth claimed T24971: .zip files do not extract in superbuild (Windows non-NTFS file system).

yep those seem to work
also: apparently this issue occurs when building on non-NTFS disks i.e. exFAT (testing now but we might think about only having .tar.gz files on thirdparty)

Jun 25 2018, 3:02 PM · Restricted Project, IGT, MITK
kirchnth added a comment to T24971: .zip files do not extract in superbuild (Windows non-NTFS file system).

Note that the issue seems to occur for .zip files from thirdparty in general - but not on all windows machines
the .tar.gz files all work fine

Jun 25 2018, 2:55 PM · Restricted Project, IGT, MITK
kirchnth added a comment to T24971: .zip files do not extract in superbuild (Windows non-NTFS file system).

Note that giving new tasks a high priority most probably means that it is important enough that you work on it instead of expecting someone will do so. So go ahead. :-)

Jun 25 2018, 2:52 PM · Restricted Project, IGT, MITK

Jun 19 2018

kirchnth added a parent task for T24908: Add hardware signal delay compensation to Photoacoustics Algorithms Module: Unknown Object (Maniphest Task).
Jun 19 2018, 9:01 PM · MITK, Photoacoustics
kirchnth committed rMITKa1bf947fe208: Merge branch 'T24921-fixOOM' (authored by kirchnth).
Merge branch 'T24921-fixOOM'
Jun 19 2018, 7:30 PM
kirchnth committed rMITK14601dd242e1: changed to more default default values (authored by kirchnth).
changed to more default default values
Jun 19 2018, 5:32 PM
kirchnth committed rMITK6d8e179747c3: Fixed the Bandpass Frequencies to have the correct meaning and range Added a… (authored by kirchnth).
Fixed the Bandpass Frequencies to have the correct meaning and range Added a…
Jun 19 2018, 5:28 PM
kirchnth committed rMITK4d86c7a00cc9: Merge branch 'master' of https://phabricator.mitk.org/source/mitk into T24921… (authored by kirchnth).
Merge branch 'master' of https://phabricator.mitk.org/source/mitk into T24921…
Jun 19 2018, 5:28 PM
kirchnth committed rMITKaf3940244436: fixes gcc compile warnings (initialization) (authored by kirchnth).
fixes gcc compile warnings (initialization)
Jun 19 2018, 2:28 PM

Jun 8 2018

kirchnth committed rMITK71faba58d154: Merge branch 'T24740-PhotoacousticsAlgorithms-Tests' (authored by kirchnth).
Merge branch 'T24740-PhotoacousticsAlgorithms-Tests'
Jun 8 2018, 4:38 PM
kirchnth closed T24740: Write tests for PhotoacousticsAlgorithms as Resolved.

fixed that band pass re-sampling and will now merge it into master.

Jun 8 2018, 3:42 PM · Photoacoustics, MITK
kirchnth committed rMITK69f2056cf13b: fixed the check power of two check and resampling for the band pass filter also… (authored by kirchnth).
fixed the check power of two check and resampling for the band pass filter also…
Jun 8 2018, 3:37 PM

Jun 7 2018

kirchnth committed rMITK47fd4fbb5097: removed refactoring errors (authored by kirchnth).
removed refactoring errors
Jun 7 2018, 4:50 PM
kirchnth added a comment to T24740: Write tests for PhotoacousticsAlgorithms.
[529.464] Instantiating BandpassFilter...
[529.464] Instantiating BandpassFilter...[Done]
[532.181] SingleVoxel: 0.514558
[532.181] HighPass: 0
[532.181] LowPass: 1e+06
[532.181] cutoffPixelHighPass: 0
[532.181] cutoffPixelLowPass: 1023.5
[532.771] Destructed BandpassFilter.
[532.771] [PhotoacousticFilterService] destructed filter service
terminate called after throwing an instance of 'itk::ExceptionObject'
  what():  /home/thomaskirchner/projects/refac/mitk-superbuild/ep/src/ITK/Modules/Core/Common/src/itkMultiThreader.cxx:399:
itk::ERROR: MultiThreader(0x7efc8800bec0): Exception occurred during SingleMethodExecute
/home/thomaskirchner/projects/refac/mitk/Modules/PhotoacousticsAlgorithms/include/../ITKFilter/ITKUltrasound/itkVnlFFT1DRealToComplexConjugateImageFilter.hxx:66:
itk::ERROR: VnlFFT1DRealToComplexConjugateImageFilter(0x7efc88012890): Illegal Array DIM for FFT
Jun 7 2018, 4:49 PM · Photoacoustics, MITK

May 29 2018

kirchnth committed rMITK1f437c4ead6a: fixed faulty function call in PA plugin (authored by kirchnth).
fixed faulty function call in PA plugin
May 29 2018, 4:30 PM
kirchnth committed rMITKd7b75b31e65b: fixes for linux gpu implementations (authored by kirchnth).
fixes for linux gpu implementations
May 29 2018, 4:00 PM

May 28 2018

kirchnth awarded T24585: Mirror MITK-Data to Github.com a Evil Spooky Haunted Tree token.
May 28 2018, 2:33 PM · MITK
kirchnth raised the priority of T24585: Mirror MITK-Data to Github.com from Wishlist to High.

This is actually quite the issue. I am not able to finish a superbuild since Friday - i tried at least 20 times (because i know it sometimes hangs up).

May 28 2018, 2:32 PM · MITK

May 25 2018

kirchnth committed rMITK84f74a33b297: switched openigtlink lib used to release 3 and dealt with the ensuing build… (authored by kirchnth).
switched openigtlink lib used to release 3 and dealt with the ensuing build…
May 25 2018, 4:13 PM
kirchnth added a comment to T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04].

Pushed new branch T24778-update-oigtl-to-v3.

May 25 2018, 4:12 PM · Photoacoustics, Restricted Project, IGT, MITK

May 15 2018

kirchnth triaged T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04] as High priority.
May 15 2018, 3:43 PM · Photoacoustics, Restricted Project, IGT, MITK
kirchnth added a comment to T24333: Noteworthy new features since MITK 2016.11.

T22228 is a new plugin with a lot of beamforming functionality for photoacoustics and ultrasound

May 15 2018, 2:22 PM · MITK (2018-04)

Apr 19 2018

kirchnth closed T24688: Memory leak while cropping in PA image processing as Resolved.
Apr 19 2018, 7:18 PM · Photoacoustics, MITK
kirchnth committed rMITK9cc018487fcb: Merge branch 'T24688-leak-quick-fix' (authored by kirchnth).
Merge branch 'T24688-leak-quick-fix'
Apr 19 2018, 7:17 PM
kirchnth committed rMITK0f83e82d0cfb: this removes the memory leak (authored by kirchnth).
this removes the memory leak
Apr 19 2018, 7:16 PM
kirchnth added a comment to T24688: Memory leak while cropping in PA image processing.

Pushed new branch T24688-leak-quick-fix.

Apr 19 2018, 7:16 PM · Photoacoustics, MITK
kirchnth triaged T24688: Memory leak while cropping in PA image processing as Normal priority.
Apr 19 2018, 7:14 PM · Photoacoustics, MITK
kirchnth added a task to rMITK390e6b7739ad: fixes T24682 and adds separate low and high pass tukey alphas: T24682: band pass in PA image processing not working as intended.
Apr 19 2018, 1:18 PM
kirchnth committed rMITK06ad6a639ebc: Merge branch 'T24682-PA-BP-tukey-alpha' (authored by kirchnth).
Merge branch 'T24682-PA-BP-tukey-alpha'
Apr 19 2018, 1:18 PM
kirchnth closed T24682: band pass in PA image processing not working as intended as Resolved by committing rMITK390e6b7739ad: fixes T24682 and adds separate low and high pass tukey alphas.
Apr 19 2018, 1:18 PM · Photoacoustics, MITK
kirchnth committed rMITK390e6b7739ad: fixes T24682 and adds separate low and high pass tukey alphas (authored by kirchnth).
fixes T24682 and adds separate low and high pass tukey alphas
Apr 19 2018, 1:15 PM
kirchnth added a comment to T24682: band pass in PA image processing not working as intended.

Pushed new branch T24682-PA-BP-tukey-alpha.

Apr 19 2018, 1:15 PM · Photoacoustics, MITK
kirchnth renamed T24682: band pass in PA image processing not working as intended from band pass in image processing not working as intended to band pass in PA image processing not working as intended.
Apr 19 2018, 11:51 AM · Photoacoustics, MITK
kirchnth triaged T24682: band pass in PA image processing not working as intended as Normal priority.
Apr 19 2018, 11:51 AM · Photoacoustics, MITK

Apr 18 2018

kirchnth committed rMITK0fdf1cc8c3d0: added some run time measurements (authored by kirchnth).
added some run time measurements
Apr 18 2018, 1:19 PM

Apr 17 2018

kirchnth added a member for Photoacoustics: adler.
Apr 17 2018, 2:54 PM

Mar 29 2018

kirchnth added a comment to T24251: Allow processing of more than one device output in MITK-US.

i think it works ... next week we will know for certain

Mar 29 2018, 4:28 PM · Photoacoustics, MITK, IGT

Feb 20 2018

kirchnth moved T24251: Allow processing of more than one device output in MITK-US from Backlog to wip on the Photoacoustics board.
Feb 20 2018, 3:23 PM · Photoacoustics, MITK, IGT
kirchnth added a project to T24251: Allow processing of more than one device output in MITK-US: Photoacoustics.
Feb 20 2018, 3:18 PM · Photoacoustics, MITK, IGT

Jan 10 2018

kirchnth added a task to rMITKa18f5d517a39: fixes T23374 and minor refactoring cleanup: Unknown Object (Maniphest Task).
Jan 10 2018, 6:18 PM
kirchnth committed rMITKe5dd10771f0f: Merge branch 'T22228-PApluginIntegration2018' (authored by kirchnth).
Merge branch 'T22228-PApluginIntegration2018'
Jan 10 2018, 6:18 PM
kirchnth committed rMITK908af0cf3ea9: this empty documentation appeared top level an was thus removed (authored by kirchnth).
this empty documentation appeared top level an was thus removed
Jan 10 2018, 6:17 PM
kirchnth committed rMITK0bd298eb050a: Merge remote-tracking branch 'origin/T22228-PApluginIntegrationSeptember' into… (authored by kirchnth).
Merge remote-tracking branch 'origin/T22228-PApluginIntegrationSeptember' into…
Jan 10 2018, 6:17 PM
kirchnth added a task to rMITKb187bc4a4acf: just some typecasting to be sure: Unknown Object (Maniphest Task).
Jan 10 2018, 6:09 PM
kirchnth committed rMITK03e0c46539ce: included and linked PA documentation files (authored by kirchnth).
included and linked PA documentation files
Jan 10 2018, 5:36 PM

Dec 15 2017

kirchnth committed rMITK724176bd208b: Batch fixes (authored by kirchnth).
Batch fixes
Dec 15 2017, 10:54 PM
kirchnth committed rMITKf86d7b706a2e: Merge branch 'T22228-PApluginIntegrationSeptember' of https://phabricator.mitk. (authored by kirchnth).
Merge branch 'T22228-PApluginIntegrationSeptember' of https://phabricator.mitk.
Dec 15 2017, 10:54 PM
kirchnth committed rMITK9ce68418f58b: Merge branch 'T22228-PApluginIntegrationSeptember' of https://phabricator.mitk. (authored by kirchnth).
Merge branch 'T22228-PApluginIntegrationSeptember' of https://phabricator.mitk.
Dec 15 2017, 10:54 PM
kirchnth committed rMITKc3b8cec6fcdb: Merge branch 'T22228-PApluginIntegrationSeptember' of https://phabricator.mitk. (authored by kirchnth).
Merge branch 'T22228-PApluginIntegrationSeptember' of https://phabricator.mitk.
Dec 15 2017, 10:54 PM
kirchnth committed rMITKc7f0aebda30d: changed standard values in gui (authored by kirchnth).
changed standard values in gui
Dec 15 2017, 10:54 PM

Oct 24 2017

kirchnth committed rMITK817dd0ef3295: now the geometry works (authored by kirchnth).
now the geometry works
Oct 24 2017, 11:21 PM
kirchnth committed rMITK67aa373e9a9d: this now actually unmixes the first sequence in a stack its slow though and the… (authored by kirchnth).
this now actually unmixes the first sequence in a stack its slow though and the…
Oct 24 2017, 7:34 PM

Oct 23 2017

kirchnth committed rMITK3d15b285a84d: something worked! (authored by kirchnth).
something worked!
Oct 23 2017, 6:52 PM
kirchnth committed rMITK02b8123d7239: salvaged T22340 (authored by kirchnth).
salvaged T22340
Oct 23 2017, 6:52 PM

Oct 13 2017

kirchnth committed rMITK41d3b2d3f0db: Merge branch 'master' of https://phabricator.mitk.org/source/mitk (authored by kirchnth).
Merge branch 'master' of https://phabricator.mitk.org/source/mitk
Oct 13 2017, 11:40 AM
kirchnth committed rMITK453d5d4b1fda: Merge branch 'T23538-fixAnnotationTests' (authored by kirchnth).
Merge branch 'T23538-fixAnnotationTests'
Oct 13 2017, 11:40 AM
kirchnth committed rMITK68c595809ad7: COMP (authored by kirchnth).
COMP
Oct 13 2017, 11:39 AM
kirchnth committed rMITK826a557223f2: Merge branch 'T23538-fixAnnotationTests' (authored by kirchnth).
Merge branch 'T23538-fixAnnotationTests'
Oct 13 2017, 11:23 AM
kirchnth committed rMD26bef797e9e4: new watermark for tests (authored by kirchnth).
new watermark for tests
Oct 13 2017, 11:21 AM
kirchnth committed rMITK181e84362ae2: there is no mbiLogo anymore (authored by kirchnth).
there is no mbiLogo anymore
Oct 13 2017, 11:13 AM
kirchnth added a comment to T23538: Annotation Rendering Tests fail.

Pushed new branch T23538-fixAnnotationTests.

Oct 13 2017, 11:13 AM · Restricted Project, MITK
kirchnth added a comment to T23538: Annotation Rendering Tests fail.

rMDc2620cd271577171972b993eb967983e7434e4f7
should fix the first three tests

Oct 13 2017, 10:30 AM · Restricted Project, MITK
kirchnth committed rMDc2620cd27157: re-took annotation test screen shots to account for layout changes (authored by kirchnth).
re-took annotation test screen shots to account for layout changes
Oct 13 2017, 10:28 AM
kirchnth created T23538: Annotation Rendering Tests fail.
Oct 13 2017, 9:54 AM · Restricted Project, MITK

Oct 11 2017

kirchnth added a member for Photoacoustics: dreherk.
Oct 11 2017, 1:36 PM

Sep 29 2017

kirchnth closed T23457: level window scale cant be set to <0.01 and >=100 values as Resolved.

fixed it - now works nicely and accurately for small ranges

Sep 29 2017, 5:25 PM · Restricted Project, MITK
kirchnth committed rMITKad5bd8af2983: Merge branch 'T23457-levelWindowScaleExpansion' (authored by kirchnth).
Merge branch 'T23457-levelWindowScaleExpansion'
Sep 29 2017, 5:24 PM
kirchnth committed rMITK661f266a2740: level window slider now works in every range mainly fixed by declaring as… (authored by kirchnth).
level window slider now works in every range mainly fixed by declaring as…
Sep 29 2017, 5:22 PM
kirchnth committed rMITKa4dfeec42f20: extending the possible Range (authored by kirchnth).
extending the possible Range
Sep 29 2017, 5:22 PM
kirchnth committed rMITK3b0fd79ae65f: i like this color for the levelwindow slider more ... also it works better in… (authored by kirchnth).
i like this color for the levelwindow slider more ... also it works better in…
Sep 29 2017, 5:22 PM
kirchnth added a comment to T23457: level window scale cant be set to <0.01 and >=100 values.

Pushed new branch T23457-levelWindowScaleExpansion.

Sep 29 2017, 5:22 PM · Restricted Project, MITK
kirchnth committed rMITKa8a3f1dd9a70: quick fixes of linux specific compile errors (authored by kirchnth).
quick fixes of linux specific compile errors
Sep 29 2017, 2:11 PM
kirchnth closed T23458: About window has outdated information and the wrong logo as Resolved.

updated and made nicer and merged in master

Sep 29 2017, 1:23 PM · Restricted Project, MITK
kirchnth committed rMITK45992c080525: Merge branch 'master' of https://phabricator.mitk.org/source/mitk (authored by kirchnth).
Merge branch 'master' of https://phabricator.mitk.org/source/mitk
Sep 29 2017, 1:23 PM
kirchnth committed rMITKf2f0d820cfe9: Merge branch 'T23458-updateAboutWindow' (authored by kirchnth).
Merge branch 'T23458-updateAboutWindow'
Sep 29 2017, 1:23 PM
kirchnth committed rMITK57d5f23ff30a: Replaced the logo and updated info in about (authored by kirchnth).
Replaced the logo and updated info in about
Sep 29 2017, 1:21 PM
kirchnth added a comment to T23458: About window has outdated information and the wrong logo.

Pushed new branch T23458-updateAboutWindow.

Sep 29 2017, 1:21 PM · Restricted Project, MITK
kirchnth created T23458: About window has outdated information and the wrong logo.
Sep 29 2017, 11:05 AM · Restricted Project, MITK
kirchnth created T23457: level window scale cant be set to <0.01 and >=100 values.
Sep 29 2017, 11:01 AM · Restricted Project, MITK