refactored diffusion commandline tool structure
74fbfb0231fd
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Description

refactored diffusion commandline tool structure

Details

Provenance

neher	Authored on Jun 29 2017, 3:14 PM
neher	Pushed on Jun 29 2017, 3:13 PM

Parents

rMITK02daae868bad: added new perspectives. updated GUIs and documentation

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Event Timeline

neher committed rMITK74fbfb0231fd: refactored diffusion commandline tool structure (authored by neher).Jun 29 2017, 3:14 PM

Changes (89)

Path

Size

Packages

CMake/

BuildConfigurations/

All.cmake

O1: MITK Reviewer Group I

mitkDiffusion.cmake

O1: MITK Reviewer Group I

mitkFiberfox.cmake

O1: MITK Reviewer Group I

Modules/

DiffusionImaging/

CMakeLists.txt

Connectomics/

CMakeLists.txt

cmdapps

	Connectomics/	cmdapps/
	DiffusionCore/	cmdapps/

CMakeLists.txt

	Connectomics/	cmdapps/
		cmdapps/

NetworkCreation.cpp

NetworkStatistics.cpp

DiffusionCore/

cmdapps/

CMakeLists.txt

CopyGeometry.cpp

DiffusionDICOMLoader.cpp

DiffusionIndices.cpp

DiffusionKurtosisFit.cpp

DwiDenoising.cpp

ExportShImage.cpp

ImageResampler.cpp

QballReconstruction.cpp

Registration.cpp

TensorDerivedMapsExtraction.cpp

TensorReconstruction.cpp

	DiffusionCore/	cmdapps/
		cmdapps/

Dicom2Nrrd.cpp

ResampleGradients.cpp

FiberTracking/

TractographyEvaluation

	FiberTracking/	cmdapps/
		cmdapps/

	FiberProcessing/

CMakeLists.txt

FiberDirectionExtraction.cpp

	Fiberfox/

Fiberfox.cpp

	Misc/

FileFormatConverter.cpp

PeakExtraction.cpp

	Tractography/

GibbsTracking.cpp

RfTraining.cpp

StreamlineTracking.cpp

	TractographyEvaluation/

LocalDirectionalFiberPlausibility.cpp

PeaksAngularError.cpp

TractometerMetrics.cpp

	FiberTracking/	cmdapps/
	DiffusionCore/	cmdapps/

	Fiberfox/

CMakeLists.txt

	Misc/

CMakeLists.txt

	Tractography/

CMakeLists.txt

	TractographyEvaluation/

CMakeLists.txt

Quantification/

CMakeLists.txt

cmdapps

	Quantification/	cmdapps/
	DiffusionCore/	cmdapps/

CMakeLists.txt

DiffusionIndices.cpp

DiffusionKurtosisFit.cpp

QballReconstruction.cpp

TensorDerivedMapsExtraction.cpp

TensorReconstruction.cpp

	Quantification/	cmdapps/
		cmdapps/

MultishellMethods.cpp

DiffusionMiniApps.dox

ExtractImageStatistics.cpp

FiberDirectionExtraction.cpp

FileFormatConverter.cpp

GibbsTracking.cpp

HotspotMiniApp.cpp

ImageStatisticsMiniApp.cpp

ImageStatisticsMiniapp_3.cpp

ImageStatisticsMiniapp_v2.cpp

LocalDirectionalFiberPlausibility.cpp

MultishellMethods.cpp

NetworkCreation.cpp

NetworkStatistics.cpp

PeakExtraction.cpp

PeaksAngularError.cpp

PlanarFigureMaskCreatorMiniapp.cpp

ResampleGradients.cpp

RfTraining.cpp

Sift2WeightCopy.cpp

StreamlineTracking.cpp

TractDensity.cpp

TractometerMetrics.cpp

rMITK74fbfb0231fd

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CMake/BuildConfigurations/All.cmake

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CMake/BuildConfigurations/mitkDiffusion.cmake

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CMake/BuildConfigurations/mitkFiberfox.cmake

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Modules/DiffusionImaging/CMakeLists.txt

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Modules/DiffusionImaging/Connectomics/CMakeLists.txt

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Modules/DiffusionImaging/Connectomics/cmdapps/CMakeLists.txt

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Modules/DiffusionImaging/Connectomics/cmdapps/NetworkCreation.cpp

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Modules/DiffusionImaging/Connectomics/cmdapps/NetworkStatistics.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/CMakeLists.txt

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Modules/DiffusionImaging/DiffusionCore/cmdapps/CopyGeometry.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/Dicom2Nrrd.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/DiffusionDICOMLoader.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/DiffusionIndices.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/DiffusionKurtosisFit.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/DwiDenoising.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/ExportShImage.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/ImageResampler.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/QballReconstruction.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/Registration.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/ResampleGradients.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/TensorDerivedMapsExtraction.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/TensorReconstruction.cpp

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Modules/DiffusionImaging/FiberTracking/CMakeLists.txt

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/CMakeLists.txt

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberDirectionExtraction.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberExtraction.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberJoin.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberProcessing.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/Sift2WeightCopy.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/TractDensity.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Fiberfox/CMakeLists.txt

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Modules/DiffusionImaging/FiberTracking/cmdapps/Fiberfox/Fiberfox.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/CMakeLists.txt

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Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/FileFormatConverter.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/PeakExtraction.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/CMakeLists.txt

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Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/GibbsTracking.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/RfTraining.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/StreamlineTracking.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/CMakeLists.txt

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/LocalDirectionalFiberPlausibility.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/PeaksAngularError.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/TractometerMetrics.cpp

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Modules/DiffusionImaging/Quantification/CMakeLists.txt

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Modules/DiffusionImaging/Quantification/cmdapps/CMakeLists.txt

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Modules/DiffusionImaging/Quantification/cmdapps/DiffusionIndices.cpp

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Modules/DiffusionImaging/Quantification/cmdapps/DiffusionKurtosisFit.cpp

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Modules/DiffusionImaging/Quantification/cmdapps/MultishellMethods.cpp

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Modules/DiffusionImaging/Quantification/cmdapps/QballReconstruction.cpp

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Modules/DiffusionImaging/Quantification/cmdapps/TensorDerivedMapsExtraction.cpp

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Modules/DiffusionImaging/Quantification/cmdapps/TensorReconstruction.cpp

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Modules/DiffusionImaging/cmdapps

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Modules/DiffusionImaging/cmdapps/CMakeLists.txt

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Modules/DiffusionImaging/cmdapps/Dicom2Nrrd.cpp

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Modules/DiffusionImaging/cmdapps/Documentation

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Modules/DiffusionImaging/cmdapps/Documentation/DiffusionMiniApps.dox

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Modules/DiffusionImaging/cmdapps/ExtractImageStatistics.cpp

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Modules/DiffusionImaging/cmdapps/FiberDirectionExtraction.cpp

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Modules/DiffusionImaging/cmdapps/FiberExtraction.cpp

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Modules/DiffusionImaging/cmdapps/FiberJoin.cpp

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Modules/DiffusionImaging/cmdapps/FiberProcessing.cpp

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Modules/DiffusionImaging/cmdapps/Fiberfox.cpp

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Modules/DiffusionImaging/cmdapps/FileFormatConverter.cpp

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Modules/DiffusionImaging/cmdapps/GibbsTracking.cpp

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Modules/DiffusionImaging/cmdapps/HotspotMiniApp.cpp

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Modules/DiffusionImaging/cmdapps/ImageStatisticsMiniApp.cpp

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Modules/DiffusionImaging/cmdapps/ImageStatisticsMiniapp_3.cpp

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Modules/DiffusionImaging/cmdapps/ImageStatisticsMiniapp_v2.cpp

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Modules/DiffusionImaging/cmdapps/LocalDirectionalFiberPlausibility.cpp

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Modules/DiffusionImaging/cmdapps/MultishellMethods.cpp

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Modules/DiffusionImaging/cmdapps/NetworkCreation.cpp

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Modules/DiffusionImaging/cmdapps/NetworkStatistics.cpp

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Modules/DiffusionImaging/cmdapps/PeakExtraction.cpp

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Modules/DiffusionImaging/cmdapps/PeaksAngularError.cpp

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Modules/DiffusionImaging/cmdapps/PlanarFigureMaskCreatorMiniapp.cpp

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Modules/DiffusionImaging/cmdapps/ResampleGradients.cpp

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Modules/DiffusionImaging/cmdapps/RfTraining.cpp

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Modules/DiffusionImaging/cmdapps/Sift2WeightCopy.cpp

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Modules/DiffusionImaging/cmdapps/StreamlineTracking.cpp

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Modules/DiffusionImaging/cmdapps/TractDensity.cpp

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Modules/DiffusionImaging/cmdapps/TractometerMetrics.cpp

refactored diffusion commandline tool structure74fbfb0231fdActions

Description

Details

Event Timeline

Changes (89)

rMITK74fbfb0231fd

CMake/BuildConfigurations/All.cmake

CMake/BuildConfigurations/mitkDiffusion.cmake

CMake/BuildConfigurations/mitkFiberfox.cmake

Modules/DiffusionImaging/CMakeLists.txt

Modules/DiffusionImaging/Connectomics/CMakeLists.txt

Modules/DiffusionImaging/Connectomics/cmdapps/CMakeLists.txt

Modules/DiffusionImaging/Connectomics/cmdapps/NetworkCreation.cpp

Modules/DiffusionImaging/Connectomics/cmdapps/NetworkStatistics.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/CMakeLists.txt

Modules/DiffusionImaging/DiffusionCore/cmdapps/CopyGeometry.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/Dicom2Nrrd.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/DiffusionDICOMLoader.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/DiffusionIndices.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/DiffusionKurtosisFit.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/DwiDenoising.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/ExportShImage.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/ImageResampler.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/QballReconstruction.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/Registration.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/ResampleGradients.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/TensorDerivedMapsExtraction.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/TensorReconstruction.cpp

Modules/DiffusionImaging/FiberTracking/CMakeLists.txt

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/CMakeLists.txt

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberDirectionExtraction.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberExtraction.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberJoin.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberProcessing.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/Sift2WeightCopy.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/TractDensity.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Fiberfox/CMakeLists.txt

Modules/DiffusionImaging/FiberTracking/cmdapps/Fiberfox/Fiberfox.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/CMakeLists.txt

Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/FileFormatConverter.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/PeakExtraction.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/CMakeLists.txt

Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/GibbsTracking.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/RfTraining.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/StreamlineTracking.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/CMakeLists.txt

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/LocalDirectionalFiberPlausibility.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/PeaksAngularError.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/TractometerMetrics.cpp

Modules/DiffusionImaging/Quantification/CMakeLists.txt

Modules/DiffusionImaging/Quantification/cmdapps/CMakeLists.txt

Modules/DiffusionImaging/Quantification/cmdapps/DiffusionIndices.cpp

Modules/DiffusionImaging/Quantification/cmdapps/DiffusionKurtosisFit.cpp

Modules/DiffusionImaging/Quantification/cmdapps/MultishellMethods.cpp

Modules/DiffusionImaging/Quantification/cmdapps/QballReconstruction.cpp

Modules/DiffusionImaging/Quantification/cmdapps/TensorDerivedMapsExtraction.cpp

Modules/DiffusionImaging/Quantification/cmdapps/TensorReconstruction.cpp

Modules/DiffusionImaging/cmdapps

Modules/DiffusionImaging/cmdapps/CMakeLists.txt

Modules/DiffusionImaging/cmdapps/Dicom2Nrrd.cpp

Modules/DiffusionImaging/cmdapps/Documentation

Modules/DiffusionImaging/cmdapps/Documentation/DiffusionMiniApps.dox

Modules/DiffusionImaging/cmdapps/ExtractImageStatistics.cpp

Modules/DiffusionImaging/cmdapps/FiberDirectionExtraction.cpp

Modules/DiffusionImaging/cmdapps/FiberExtraction.cpp

Modules/DiffusionImaging/cmdapps/FiberJoin.cpp

Modules/DiffusionImaging/cmdapps/FiberProcessing.cpp

Modules/DiffusionImaging/cmdapps/Fiberfox.cpp

Modules/DiffusionImaging/cmdapps/FileFormatConverter.cpp

Modules/DiffusionImaging/cmdapps/GibbsTracking.cpp

Modules/DiffusionImaging/cmdapps/HotspotMiniApp.cpp

Modules/DiffusionImaging/cmdapps/ImageStatisticsMiniApp.cpp

Modules/DiffusionImaging/cmdapps/ImageStatisticsMiniapp_3.cpp

Modules/DiffusionImaging/cmdapps/ImageStatisticsMiniapp_v2.cpp

Modules/DiffusionImaging/cmdapps/LocalDirectionalFiberPlausibility.cpp

Modules/DiffusionImaging/cmdapps/MultishellMethods.cpp

Modules/DiffusionImaging/cmdapps/NetworkCreation.cpp

Modules/DiffusionImaging/cmdapps/NetworkStatistics.cpp

Modules/DiffusionImaging/cmdapps/PeakExtraction.cpp

Modules/DiffusionImaging/cmdapps/PeaksAngularError.cpp

refactored diffusion commandline tool structure
74fbfb0231fd
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