Diffusion MITK 7c7b7f204716

Merge branch 'bug-16236-hotspot-search-imagestatisticscalculator-integration…
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Merge branch 'bug-16236-hotspot-search-imagestatisticscalculator-integration-snapshot' into releases/snapshot-201308-v2

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Authored on Feb 10 2014, 6:13 PM

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rMITKa0d41dea4d72: Merge branch 'bug-16236-hotspot-search-testdefinition' into bug-16236-hotspot…
rMITKc775c471d1df: Merge branch 'bug-16744-develop' into releases/snapshot-201308-v2

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maleike committed rMITK7c7b7f204716: Merge branch 'bug-16236-hotspot-search-imagestatisticscalculator-integration… (authored by maleike).Feb 10 2014, 6:13 PM

Merged Changes

a0d41dea4d72 Merge branch 'bug-16236-hotspot-search-testdefinition' into bug-16236-hotspot…
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maleike
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763b463da4f9 Rename variables, change formatting
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maleike
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714ac55226a7 Fix calculation of min/max index
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maleike
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a134e1c5ac42 Fix mask handling
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maleike
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f05e7e7847e6 Fix position verification
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cbbbeefab1bc Update test cases
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2ea34b8f7da6 Merge branch 'bug-16236-hotspot-search-testdefinition' into bug-16236-hotspot…
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2da145a07952 Update to more clear test cases
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18d6d4c63e8b Merge branch 'bug-16236-hotspot-search-testdefinition' into bug-16236-hotspot…
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6dddedb74013 Fix test definition
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82b5671a5f1a Generate test cases via CMake
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maleike
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bc1d4269ef3c Fix documentation in details
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maleike
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d58fda45acb9 Improve test structure and output a bit
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b02e627d1b6b Merge branch 'bug-16236-hotspot-search-imagestatisticscalculator' into bug…
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saruji
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1a0f2c5c808d New XML-files for hotspot-test
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• grafa
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a5455fa80f54 fix compile errors on linux
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4402e1e20f1c Merge remote-tracking branch 'origin/bug-16396-gaussian-image-generator-for…
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4bbef6a835ac Changed value of epsilon
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• grafa
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0a9efdc8e2f9 Did some changes in the documentation
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161a0a3e0a4c Fixed bugs in Hotspot-Test and convolution-kernel-calculation, added variance…
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f40a6b186ba5 Added another comment
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df59160b24f2 Edited documentation, added comments and a new version of hotspotcase5-image
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9b3dcfef5c0b Added images for documentation
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6f2e8ed4ddfc Multi-label statistic-calculation is now supported in hotspot-test
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• grafa
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7c0c4cb3f803 Added case that it is optional if hotspot is completly inside image or not and…
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• grafa
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8768426dff46 Mark locations for addition of "m_HotspotMustBeCompletelyInsideImage"
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maleike
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53221077e1bb Added operator=() overload and copy constructor for Statistics
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• grafa
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6e1f94472f5f Simplify case of unmasked hotspot calculation
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maleike
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b5c544731d74 Mark TODOs for further Statistics class work
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maleike
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44c80ab2bc78 Calculate mask correctly at image borders (shrink if outside image)
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maleike
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8f97a4ea63ec Add TODOs for 2D case ; decide for distance calculation
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maleike
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6f9f193d2b20 Mark TODOs for calculating statistics per-label
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maleike
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cc0e40ff294d Added use of get-functions in statisticsview
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• grafa
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18093e54c35c Struct Statistics is now a class with get- and set-functions
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8b7f22e5f2ea removed redundant code in hotspot test, statisticscalculator does now return…
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3277d71a63ec Calculate hotspot position
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maleike
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bd658fc31037 Update convolution image only when input has changed
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4130aca9442a Add flags for modified input radius
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maleike
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ac27d30f72b3 Change Statistics members (HotspotPeakIndex->HotspotIndex)
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c65e588937fe set the values for the normal distribution vector
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• kovacheva
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21aa6fabd73f maen value in each voxel instead of a value at a point
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c22421ed6b42 clear uncalled methods
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55f96f6e56e9 commented; adjusted spacing; labels for ROIs added
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fdddc2572ffb cut the sphere approximation when it crosses the image boundary
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• kovacheva
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985567829417 fix of recursion; allow new parameter "entireHotSpotInImage"
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13fe076bd0cf Added cuboid based subdivision of the sphere for analytical integration
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693af1b8d3e8 Documentation added; use ITK instead of C++ iterators instead
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2846f64a3281 Min/max calculation added; documentation extended
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Changes (60)

Path

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Packages

Documentation/

doxygen.conf.in

Modules/

ImageStatistics/

Testing/

O1: MITK Reviewer Group I

Data/

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GlobalPeakOutsideSegmentation_10_20.xml

O1: MITK Reviewer Group I

GlobalPeakOutsideSegmentation_25_30.xml

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GlobalPeakOutsideSegmentation_40_30.xml

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MaxOutsidePeak_10_20.xml

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MaxOutsidePeak_25_30.xml

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MaxOutsidePeak_40_30.xml

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PeakInMaxOutsideSegmentation_10_20.xml

O1: MITK Reviewer Group I

PeakInMaxOutsideSegmentation_25_30.xml

O1: MITK Reviewer Group I

PeakInMaxOutsideSegmentation_40_30.xml

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PeakNearBorder_10_20.xml

O1: MITK Reviewer Group I

PeakNearBorder_25_30.xml

O1: MITK Reviewer Group I

PeakNearBorder_40_30.xml

O1: MITK Reviewer Group I

TwoSegmentations_10_20.xml

O1: MITK Reviewer Group I

TwoSegmentations_25_30.xml

O1: MITK Reviewer Group I

TwoSegmentations_40_30.xml

O1: MITK Reviewer Group I

Hotspot_Case1.xml

O1: MITK Reviewer Group I

Hotspot_Case10.xml

O1: MITK Reviewer Group I

Hotspot_Case11.xml

O1: MITK Reviewer Group I

Hotspot_Case12.xml

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Hotspot_Case13.xml

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Hotspot_Case14.xml

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Hotspot_Case15.xml

O1: MITK Reviewer Group I

Hotspot_Case16.xml

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Hotspot_Case17.xml

O1: MITK Reviewer Group I

Hotspot_Case18.xml

O1: MITK Reviewer Group I

Hotspot_Case19.xml

O1: MITK Reviewer Group I

Hotspot_Case2.xml

O1: MITK Reviewer Group I

Hotspot_Case20.xml

O1: MITK Reviewer Group I

Hotspot_Case21.xml

O1: MITK Reviewer Group I

Hotspot_Case3.xml

O1: MITK Reviewer Group I

Hotspot_Case4.xml

O1: MITK Reviewer Group I

Hotspot_Case5.xml

O1: MITK Reviewer Group I

Hotspot_Case6.xml

O1: MITK Reviewer Group I

Hotspot_Case7.xml

O1: MITK Reviewer Group I

Hotspot_Case8.xml

O1: MITK Reviewer Group I

Hotspot_Case9.xml

O1: MITK Reviewer Group I

O1: MITK Reviewer Group I

itkMultiGaussianImageSource.h

O1: MITK Reviewer Group I

itkMultiGaussianImageSource.hxx

O1: MITK Reviewer Group I

mitkImageStatisticsCalculatorTest.cpp

O1: MITK Reviewer Group I

mitkImageStatisticsHotspotTest.cpp

O1: MITK Reviewer Group I

mitkMultiGaussianTest.cpp

O1: MITK Reviewer Group I

O1: MITK Reviewer Group I

convolutionkernelsupersampling.jpg

O1: MITK Reviewer Group I

hotspotexample.JPG

O1: MITK Reviewer Group I

mitkimagestatisticshotspottestcase1.jpg

O1: MITK Reviewer Group I

mitkimagestatisticshotspottestcase2.jpg

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mitkimagestatisticshotspottestcase3.jpg

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mitkimagestatisticshotspottestcase5.jpg

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mitkimagestatisticshotspottestcase6.jpg

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itkMultiGaussianImageSource.h

O1: MITK Reviewer Group I

itkMultiGaussianImageSource.hxx

O1: MITK Reviewer Group I

mitkImageStatisticsCalculator.cpp

O1: MITK Reviewer Group I

mitkImageStatisticsCalculator.h

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mitkImageStatisticsHotspotTest.dox

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mitkPointSetDifferenceStatisticsCalculator.cpp

O1: MITK Reviewer Group I

Plugins/

org.mitk.gui.qt.measurementtoolbox/

src/

internal/

QmitkImageStatisticsView.cpp

O1: MITK Reviewer Group I

rMITK7c7b7f204716

Documentation/doxygen.conf.in

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Modules/ImageStatistics/Testing/CMakeLists.txt

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Modules/ImageStatistics/Testing/Data/Hotspot/GlobalPeakOutsideSegmentation_10_20.xml

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Modules/ImageStatistics/Testing/Data/Hotspot/GlobalPeakOutsideSegmentation_25_30.xml

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Modules/ImageStatistics/Testing/Data/Hotspot/GlobalPeakOutsideSegmentation_40_30.xml

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Modules/ImageStatistics/Testing/Data/Hotspot/MaxOutsidePeak_10_20.xml

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Modules/ImageStatistics/Testing/Data/Hotspot/MaxOutsidePeak_25_30.xml

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Modules/ImageStatistics/Testing/Data/Hotspot/MaxOutsidePeak_40_30.xml

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Modules/ImageStatistics/Testing/Data/Hotspot/PeakInMaxOutsideSegmentation_10_20.xml

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Modules/ImageStatistics/Testing/Data/Hotspot/PeakInMaxOutsideSegmentation_25_30.xml

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Modules/ImageStatistics/Testing/Data/Hotspot/PeakInMaxOutsideSegmentation_40_30.xml

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Modules/ImageStatistics/Testing/Data/Hotspot/PeakNearBorder_10_20.xml

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Modules/ImageStatistics/Testing/Data/Hotspot/PeakNearBorder_25_30.xml

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Modules/ImageStatistics/Testing/Data/Hotspot/PeakNearBorder_40_30.xml

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Modules/ImageStatistics/Testing/Data/Hotspot/TwoSegmentations_10_20.xml

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Modules/ImageStatistics/Testing/Data/Hotspot/TwoSegmentations_25_30.xml

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Modules/ImageStatistics/Testing/Data/Hotspot/TwoSegmentations_40_30.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case1.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case10.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case11.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case12.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case13.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case14.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case15.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case16.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case17.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case18.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case19.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case2.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case20.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case21.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case3.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case4.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case5.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case6.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case7.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case8.xml

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Modules/ImageStatistics/Testing/Data/Hotspot_Case9.xml

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Modules/ImageStatistics/Testing/files.cmake

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Modules/ImageStatistics/Testing/itkMultiGaussianImageSource.h

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Modules/ImageStatistics/Testing/itkMultiGaussianImageSource.hxx

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Modules/ImageStatistics/Testing/mitkImageStatisticsCalculatorTest.cpp

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Modules/ImageStatistics/Testing/mitkImageStatisticsHotspotTest.cpp

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Modules/ImageStatistics/Testing/mitkMultiGaussianTest.cpp

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Modules/ImageStatistics/images/convolutionkernelsupersampling.jpg

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Modules/ImageStatistics/images/hotspotexample.JPG

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Modules/ImageStatistics/images/mitkimagestatisticshotspottestcase1.jpg

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Modules/ImageStatistics/images/mitkimagestatisticshotspottestcase2.jpg

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Modules/ImageStatistics/images/mitkimagestatisticshotspottestcase3.jpg

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Modules/ImageStatistics/images/mitkimagestatisticshotspottestcase5.jpg

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Modules/ImageStatistics/images/mitkimagestatisticshotspottestcase6.jpg

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Modules/ImageStatistics/itkMultiGaussianImageSource.h

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Modules/ImageStatistics/itkMultiGaussianImageSource.hxx

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Modules/ImageStatistics/mitkImageStatisticsCalculator.cpp

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Modules/ImageStatistics/mitkImageStatisticsCalculator.h

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Modules/ImageStatistics/mitkImageStatisticsHotspotTest.dox

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Modules/ImageStatistics/mitkPointSetDifferenceStatisticsCalculator.cpp

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Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsView.cpp

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