Merge branch 'T26894-Copyright'
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Merge branch 'T26894-Copyright'

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neher	Authored on Dec 5 2019, 9:29 AM
neher	Pushed on Dec 5 2019, 9:29 AM

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rMITKDIFF61f9998dc554: MBI -> MIC
rMITKDIFF4571cbba5af8: Merge branch 'T25793-FitNan'

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neher committed rMITKDIFF308f897735b8: Merge branch 'T26894-Copyright' (authored by neher).Dec 5 2019, 9:29 AM

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61f9998dc554 MBI -> MIC
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Applications/

Diffusion/

MitkDiffusion.cpp

QDiffusionImagingSplashScreen.cpp

QDiffusionImagingSplashScreen.h

CMakeExternals/

BetData.h.in

Modules/

Connectomics/

Algorithms/

BrainParcellation/

mitkCostFunctionBase.cpp

mitkCostFunctionBase.h

mitkRandomParcellationGenerator.cpp

mitkRandomParcellationGenerator.h

mitkRegionVoxelCounter.cpp

mitkRegionVoxelCounter.h

itkConnectomicsNetworkToConnectivityMatrixImageFilter.cpp

itkConnectomicsNetworkToConnectivityMatrixImageFilter.h

mitkConnectomicsBetweennessHistogram.cpp

mitkConnectomicsBetweennessHistogram.h

mitkConnectomicsDegreeHistogram.cpp

mitkConnectomicsDegreeHistogram.h

mitkConnectomicsHistogramBase.cpp

mitkConnectomicsHistogramBase.h

mitkConnectomicsHistogramCache.cpp

mitkConnectomicsHistogramCache.h

mitkConnectomicsNetworkConverter.cpp

mitkConnectomicsNetworkConverter.h

mitkConnectomicsNetworkCreator.cpp

mitkConnectomicsNetworkCreator.h

mitkConnectomicsNetworkThresholder.cpp

mitkConnectomicsNetworkThresholder.h

mitkConnectomicsShortestPathHistogram.cpp

mitkConnectomicsShortestPathHistogram.h

mitkConnectomicsSimulatedAnnealingCostFunctionBase.cpp

mitkConnectomicsSimulatedAnnealingCostFunctionBase.h

mitkConnectomicsSimulatedAnnealingCostFunctionModularity.cpp

mitkConnectomicsSimulatedAnnealingCostFunctionModularity.h

mitkConnectomicsSimulatedAnnealingManager.cpp

mitkConnectomicsSimulatedAnnealingManager.h

mitkConnectomicsSimulatedAnnealingPermutationBase.cpp

mitkConnectomicsSimulatedAnnealingPermutationBase.h

mitkConnectomicsSimulatedAnnealingPermutationModularity.cpp

mitkConnectomicsSimulatedAnnealingPermutationModularity.h

mitkConnectomicsStatisticsCalculator.cpp

mitkConnectomicsStatisticsCalculator.h

mitkConnectomicsSyntheticNetworkGenerator.cpp

mitkConnectomicsSyntheticNetworkGenerator.h

mitkCorrelationCalculator.h

mitkCorrelationCalculator.txx

mitkFreeSurferParcellationTranslator.cpp

mitkFreeSurferParcellationTranslator.h

IODataStructures/

mitkConnectomicsConstantsManager.cpp

mitkConnectomicsConstantsManager.h

mitkConnectomicsNetwork.cpp

mitkConnectomicsNetwork.h

mitkConnectomicsNetworkProperties.h

Rendering/

mitkConnectomicsEnumerationSubclassesSerializer.cpp

mitkConnectomicsNetworkMapper3D.cpp

mitkConnectomicsNetworkMapper3D.h

mitkConnectomicsRenderingEdgeColorParameterProperty.cpp

mitkConnectomicsRenderingEdgeColorParameterProperty.h

mitkConnectomicsRenderingEdgeFilteringProperty.cpp

mitkConnectomicsRenderingEdgeFilteringProperty.h

mitkConnectomicsRenderingEdgeRadiusParameterProperty.cpp

mitkConnectomicsRenderingEdgeRadiusParameterProperty.h

mitkConnectomicsRenderingEdgeThresholdParameterProperty.cpp

mitkConnectomicsRenderingEdgeThresholdParameterProperty.h

mitkConnectomicsRenderingNodeColorParameterProperty.cpp

mitkConnectomicsRenderingNodeColorParameterProperty.h

mitkConnectomicsRenderingNodeFilteringProperty.cpp

mitkConnectomicsRenderingNodeFilteringProperty.h

mitkConnectomicsRenderingNodeRadiusParameterProperty.cpp

mitkConnectomicsRenderingNodeRadiusParameterProperty.h

mitkConnectomicsRenderingNodeThresholdParameterProperty.cpp

mitkConnectomicsRenderingNodeThresholdParameterProperty.h

mitkConnectomicsRenderingProperties.h

mitkConnectomicsRenderingSchemeProperty.cpp

mitkConnectomicsRenderingSchemeProperty.h

Testing/

mitkConnectomicsNetworkCreationTest.cpp

mitkConnectomicsNetworkTest.cpp

mitkConnectomicsStatisticsCalculatorTest.cpp

mitkCorrelationCalculatorTest.cpp

DiffusionCmdApps/

Connectomics/

NetworkCreation.cpp

NetworkStatistics.cpp

FiberProcessing/

FiberClustering.cpp

FiberDirectionExtraction.cpp

FiberExtraction.cpp

FiberExtractionRoi.cpp

TractDensityFilter.cpp

Fiberfox/

Fiberfox.cpp

RandomFiberPhantom.cpp

Misc/

CopyGeometry.cpp

DImp.cpp

DReg.cpp

DiffusionDICOMLoader.cpp

DmriDenoising.cpp

FileFormatConverter.cpp

FlipPeaks.cpp

HeadMotionCorrection.cpp

ImageResampler.cpp

PeakExtraction.cpp

Registration.cpp

ResampleGradients.cpp

Python/

Quantification/

DiffusionKurtosisFit.cpp

MultishellMethods.cpp

QballReconstruction.cpp

TensorReconstruction.cpp

Tractography/

GlobalTractography.cpp

RfTraining.cpp

StreamlineTractography.cpp

TractographyEvaluation/

AnchorConstrainedPlausibility.cpp

CalculateOverlap.cpp

CheckEpsAndOverlap.cpp

ExtractSimilarTracts.cpp

GetOverlappingTracts.cpp

MergeOverlappingTracts.cpp

PeaksAngularError.cpp

ReferenceSimilarity.cpp

TractDistance.cpp

mitkDiffusionCommandLineParser.cpp

mitkDiffusionCommandLineParser.h

mitkDiffusionDataIOHelper.cpp

mitkDiffusionDataIOHelper.h

DiffusionCore/

Algorithms/

Reconstruction/

FittingFunctions/

mitkAbstractFitter.h

mitkBallStickFitter.h

mitkMultiTensorFitter.h

MultishellProcessing/

itkADCAverageFunctor.cpp

itkADCAverageFunctor.h

itkADCFitFunctor.cpp

itkADCFitFunctor.h

itkBiExpFitFunctor.cpp

itkBiExpFitFunctor.h

itkDWIVoxelFunctor.h

itkKurtosisFitFunctor.cpp

itkKurtosisFitFunctor.h

itkRadialMultishellToSingleshellImageFilter.cpp

itkRadialMultishellToSingleshellImageFilter.h

itkAnalyticalDiffusionQballReconstructionImageFilter.cpp

itkAnalyticalDiffusionQballReconstructionImageFilter.h

itkBallAndSticksImageFilter.h

itkBallAndSticksImageFilter.txx

itkDiffusionIntravoxelIncoherentMotionReconstructionImageFilter.cpp

itkDiffusionIntravoxelIncoherentMotionReconstructionImageFilter.h

itkDiffusionKurtosisReconstructionImageFilter.cxx

itkDiffusionKurtosisReconstructionImageFilter.h

itkDiffusionMultiShellQballReconstructionImageFilter.cpp

itkDiffusionMultiShellQballReconstructionImageFilter.h

itkDiffusionQballReconstructionImageFilter.h

itkDiffusionQballReconstructionImageFilter.txx

itkMultiTensorImageFilter.h

itkMultiTensorImageFilter.txx

itkOrientationDistributionFunction.h

itkOrientationDistributionFunction.txx

itkPointShell.h

itkPointShell.txx

mitkTeemDiffusionTensor3DReconstructionImageFilter.cpp

mitkTeemDiffusionTensor3DReconstructionImageFilter.h

Registration/

mitkDWIHeadMotionCorrectionFilter.cpp

mitkDWIHeadMotionCorrectionFilter.h

mitkPyramidImageRegistrationMethod.cpp

mitkPyramidImageRegistrationMethod.h

mitkPyramidRegistrationMethodHelper.h

itkAdcImageFilter.h

itkAdcImageFilter.txx

itkB0ImageExtractionImageFilter.h

itkB0ImageExtractionImageFilter.txx

itkB0ImageExtractionToSeparateImageFilter.h

itkB0ImageExtractionToSeparateImageFilter.txx

itkBrainMaskExtractionImageFilter.h

itkBrainMaskExtractionImageFilter.txx

itkCartesianToPolarVectorImageFilter.h

itkDiffusionOdfGeneralizedFaImageFilter.h

itkDiffusionOdfGeneralizedFaImageFilter.txx

itkDiffusionOdfPrepareVisualizationImageFilter.cpp

itkDiffusionOdfPrepareVisualizationImageFilter.h

itkDiffusionTensorPrincipalDirectionImageFilter.h

itkDiffusionTensorPrincipalDirectionImageFilter.txx

itkDistanceMapFilter.h

itkDistanceMapFilter.txx

itkDwiGradientLengthCorrectionFilter.cpp

itkDwiGradientLengthCorrectionFilter.h

itkDwiNormilzationFilter.h

itkDwiNormilzationFilter.txx

itkElectrostaticRepulsionDiffusionGradientReductionFilter.h

itkElectrostaticRepulsionDiffusionGradientReductionFilter.txx

itkExtractChannelFromRgbaImageFilter.cpp

itkExtractChannelFromRgbaImageFilter.h

itkExtractDwiChannelFilter.h

itkExtractDwiChannelFilter.txx

itkFlipPeaksFilter.cpp

itkFourDToVectorImageFilter.cpp

itkGaussianInterpolateImageFunction.h

itkGaussianInterpolateImageFunction.txx

itkMergeDiffusionImagesFilter.h

itkMergeDiffusionImagesFilter.txx

itkNonLocalMeansDenoisingFilter.h

itkNonLocalMeansDenoisingFilter.txx

itkOdfMaximaExtractionFilter.cpp

itkOdfToRgbImageFilter.h

itkPolarToCartesianVectorImageFilter.h

itkRegularizedIVIMLocalVariationImageFilter.h

itkRegularizedIVIMLocalVariationImageFilter.txx

itkRegularizedIVIMReconstructionFilter.h

itkRegularizedIVIMReconstructionFilter.txx

itkRegularizedIVIMReconstructionSingleIteration.h

itkRegularizedIVIMReconstructionSingleIteration.txx

itkRemoveDwiChannelFilter.h

itkRemoveDwiChannelFilter.txx

itkResampleDwiImageFilter.h

itkResampleDwiImageFilter.txx

itkResidualImageFilter.h

itkResidualImageFilter.txx

itkShCoefficientImageExporter.cpp

itkShCoefficientImageImporter.cpp

itkShToOdfImageFilter.cpp

itkShToRgbImageFilter.h

itkSplitDWImageFilter.h

itkSplitDWImageFilter.txx

itkSplitVectorImageFilter.cpp

itkTensorDerivedMeasurementsFilter.h

itkTensorDerivedMeasurementsFilter.txx

itkTensorImageToDiffusionImageFilter.h

itkTensorImageToDiffusionImageFilter.txx

itkTensorImageToOdfImageFilter.h

itkTensorImageToOdfImageFilter.txx

itkTensorReconstructionWithEigenvalueCorrectionFilter.h

itkTensorReconstructionWithEigenvalueCorrectionFilter.txx

itkTensorToL2NormImageFilter.h

itkTensorToL2NormImageFilter.txx

itkTensorToRgbImageFilter.h

itkVectorImageToFourDImageFilter.cpp

itkVectorImageToImageFilter.h

itkVectorImageToImageFilter.txx

mitkPartialVolumeAnalysisClusteringCalculator.cpp

mitkPartialVolumeAnalysisClusteringCalculator.h

mitkPartialVolumeAnalysisHistogramCalculator.cpp

mitkPartialVolumeAnalysisHistogramCalculator.h

DicomImport/

mitkDicomDiffusionImageHeaderReader.cpp

mitkDicomDiffusionImageHeaderReader.h

mitkDicomDiffusionImageReader.cpp

mitkDicomDiffusionImageReader.h

mitkDiffusionDICOMFileReader.cpp

mitkDiffusionDICOMFileReader.h

mitkDiffusionHeaderDICOMFileReader.cpp

mitkDiffusionHeaderDICOMFileReader.h

mitkDiffusionHeaderPhilipsDICOMFileReader.cpp

mitkDiffusionHeaderPhilipsDICOMFileReader.h

mitkDiffusionHeaderSiemensDICOMFileReader.cpp

mitkDiffusionHeaderSiemensDICOMFileReader.h

mitkDiffusionHeaderSiemensMosaicDICOMFileReader.h

mitkGEDicomDiffusionImageHeaderReader.cpp

mitkGEDicomDiffusionImageHeaderReader.h

mitkGroupDiffusionHeadersFilter.cpp

mitkGroupDiffusionHeadersFilter.h

mitkPhilipsDicomDiffusionImageHeaderReader.cpp

mitkPhilipsDicomDiffusionImageHeaderReader.h

mitkSiemensDicomDiffusionImageHeaderReader.cpp

mitkSiemensDicomDiffusionImageHeaderReader.h

mitkSiemensMosaicDicomDiffusionImageHeaderReader.cpp

mitkSiemensMosaicDicomDiffusionImageHeaderReader.h

IODataStructures/

DiffusionWeightedImages/

mitkDiffusionImageCorrectionFilter.cpp

mitkDiffusionImageCorrectionFilter.h

mitkDiffusionImageCreationFilter.cpp

mitkDiffusionImageCreationFilter.h

mitkDiffusionImageHeaderInformation.cpp

mitkDiffusionImageHeaderInformation.h

mitkDiffusionImageTransformedCreationFilter.cxx

mitkDiffusionImageTransformedCreationFilter.h

Properties/

mitkBValueMapProperty.cpp

mitkBValueMapProperty.h

mitkBValueMapPropertySerializer.cpp

mitkDiffusionPropertyHelper.cpp

mitkDiffusionPropertyHelper.h

mitkGradientDirectionsProperty.cpp

mitkGradientDirectionsProperty.h

mitkGradientDirectionsPropertySerializer.cpp

mitkMeasurementFrameProperty.cpp

mitkMeasurementFrameProperty.h

mitkMeasurementFramePropertySerializer.cpp

mitkNodePredicateIsDWI.cpp

mitkNodePredicateIsDWI.h

mitkPlanarFigureComposite.cpp

mitkPlanarFigureComposite.h

mitkRegistrationObject.cpp

mitkRegistrationObject.h

mitkTractographyForest.cpp

mitkTractographyForest.h

PythonRequirements.txt

Rendering/

mitkCompositeMapper.cpp

mitkCompositeMapper.h

mitkFiberBundleMapper2D.cpp

mitkFiberBundleMapper2D.h

mitkFiberBundleMapper3D.cpp

mitkFiberBundleMapper3D.h

mitkOdfNormalizationMethodProperty.cpp

mitkOdfNormalizationMethodProperty.h

mitkOdfScaleByProperty.cpp

mitkOdfScaleByProperty.h

mitkOdfVtkMapper2D.h

mitkOdfVtkMapper2D.txx

mitkPeakImageMapper2D.cpp

mitkPeakImageMapper2D.h

mitkPeakImageMapper3D.cpp

mitkPeakImageMapper3D.h

mitkVectorImageVtkGlyphMapper3D.cpp

mitkVectorImageVtkGlyphMapper3D.h

vtkMaskedProgrammableGlyphFilter.cpp

vtkMaskedProgrammableGlyphFilter.h

vtkOdfSource.h

vtkThickPlane.h

Testing/

mitkB0ExtractionToSeparateImagesFilterTest.cpp

mitkConvertDWITypeTest.cpp

mitkDWHeadMotionCorrectionTest.cpp

mitkDiffusionDICOMFileReaderTest.cpp

mitkDiffusionDICOMFileReaderTestHelper.h

mitkDiffusionPropertySerializerTest.cpp

mitkExtractSingleShellTest.cpp

mitkImageReconstructionTest.cpp

mitkNonLocalMeansDenoisingTest.cpp

mitkPyramidImageRegistrationMethodTest.cpp

mitkDiffusionFunctionCollection.cpp

mitkDiffusionFunctionCollection.h

DiffusionIO/

ObjectFactories/

mitkConnectomicsObjectFactory.cpp

mitkConnectomicsObjectFactory.h

mitkDiffusionCoreObjectFactory.cpp

mitkDiffusionCoreObjectFactory.h

ReaderWriter/

mitkConnectomicsNetworkCSVWriter.cpp

mitkConnectomicsNetworkCSVWriter.h

mitkConnectomicsNetworkDefinitions.cpp

mitkConnectomicsNetworkDefinitions.h

mitkConnectomicsNetworkMatrixWriter.cpp

mitkConnectomicsNetworkMatrixWriter.h

mitkConnectomicsNetworkReader.cpp

mitkConnectomicsNetworkReader.h

mitkConnectomicsNetworkSerializer.cpp

mitkConnectomicsNetworkSerializer.h

mitkConnectomicsNetworkWriter.cpp

mitkConnectomicsNetworkWriter.h

mitkDiffusionImageDicomReader.cpp

mitkDiffusionImageDicomReader.h

mitkDiffusionImageNiftiReader.cpp

mitkDiffusionImageNiftiReader.h

mitkDiffusionImageNiftiWriter.cpp

mitkDiffusionImageNiftiWriter.h

mitkDiffusionImageNrrdReader.cpp

mitkDiffusionImageNrrdReader.h

mitkDiffusionImageNrrdWriter.cpp

mitkDiffusionImageNrrdWriter.h

mitkFiberBundleDicomReader.cpp

mitkFiberBundleDicomReader.h

mitkFiberBundleDicomWriter.cpp

mitkFiberBundleDicomWriter.h

mitkFiberBundleSerializer.cpp

mitkFiberBundleSerializer.h

mitkFiberBundleTckReader.cpp

mitkFiberBundleTckReader.h

mitkFiberBundleTrackVisReader.cpp

mitkFiberBundleTrackVisReader.h

mitkFiberBundleTrackVisWriter.cpp

mitkFiberBundleTrackVisWriter.h

mitkFiberBundleVtkReader.cpp

mitkFiberBundleVtkReader.h

mitkFiberBundleVtkWriter.cpp

mitkFiberBundleVtkWriter.h

mitkNrrdOdfImageReader.cpp

mitkNrrdOdfImageReader.h

mitkNrrdOdfImageWriter.cpp

mitkNrrdOdfImageWriter.h

mitkNrrdTensorImageReader.cpp

mitkNrrdTensorImageReader.h

mitkNrrdTensorImageWriter.cpp

mitkNrrdTensorImageWriter.h

mitkOdfImageSerializer.cpp

mitkOdfImageSerializer.h

mitkPeakImageReader.cpp

mitkPeakImageReader.h

mitkPeakImageSerializer.cpp

mitkPeakImageSerializer.h

mitkPlanarFigureCompositeReader.cpp

mitkPlanarFigureCompositeReader.h

mitkPlanarFigureCompositeSerializer.cpp

mitkPlanarFigureCompositeSerializer.h

mitkPlanarFigureCompositeWriter.cpp

mitkPlanarFigureCompositeWriter.h

mitkShImageReader.cpp

mitkShImageReader.h

mitkShImageSerializer.cpp

mitkShImageSerializer.h

mitkShImageWriter.cpp

mitkShImageWriter.h

mitkTensorImageSerializer.cpp

mitkTensorImageSerializer.h

mitkTractographyForestReader.cpp

mitkTractographyForestReader.h

mitkTractographyForestSerializer.cpp

mitkTractographyForestSerializer.h

mitkTractographyForestWriter.cpp

mitkTractographyForestWriter.h

mitkDiffusionIOMimeTypes.cpp

mitkDiffusionIOMimeTypes.h

mitkDiffusionServiceActivator.cpp

FiberTracking/

Algorithms/

ClusteringMetrics/

mitkClusteringMetric.h

mitkClusteringMetricAnatomic.h

mitkClusteringMetricEuclideanMax.h

mitkClusteringMetricEuclideanMean.h

mitkClusteringMetricEuclideanStd.h

mitkClusteringMetricInnerAngles.h

mitkClusteringMetricLength.h

mitkClusteringMetricScalarMap.h

GibbsTracking/

mitkEnergyComputer.cpp

mitkEnergyComputer.h

mitkFiberBuilder.cpp

mitkFiberBuilder.h

mitkMetropolisHastingsSampler.cpp

mitkMetropolisHastingsSampler.h

mitkSphereInterpolator.cpp

mitkSphereInterpolator.h

StochasticTracking/

itkSlowPolyLineParametricPath.h

itkSlowPolyLineParametricPath.txx

itkStochasticTractographyFilter_SD.txx

TrackingHandlers/

mitkTrackingDataHandler.cpp

mitkTrackingDataHandler.h

mitkTrackingHandlerOdf.cpp

mitkTrackingHandlerOdf.h

mitkTrackingHandlerPeaks.cpp

mitkTrackingHandlerPeaks.h

mitkTrackingHandlerRandomForest.cpp

mitkTrackingHandlerRandomForest.h

mitkTrackingHandlerTensor.cpp

mitkTrackingHandlerTensor.h

itkEvaluateDirectionImagesFilter.cpp

itkEvaluateDirectionImagesFilter.h

itkEvaluateTractogramDirectionsFilter.cpp

itkEvaluateTractogramDirectionsFilter.h

itkFiberCurvatureFilter.cpp

itkFiberCurvatureFilter.h

itkFiberExtractionFilter.cpp

itkFiberExtractionFilter.h

itkGibbsTrackingFilter.cpp

itkGibbsTrackingFilter.h

itkStochasticTractographyFilter.h

itkStochasticTractographyFilter.txx

itkStreamlineTrackingFilter.cpp

itkStreamlineTrackingFilter.h

itkTdiToVolumeFractionFilter.cpp

itkTdiToVolumeFractionFilter.h

itkTractClusteringFilter.cpp

itkTractClusteringFilter.h

itkTractDensityImageFilter.cpp

itkTractDensityImageFilter.h

itkTractDistanceFilter.cpp

itkTractDistanceFilter.h

itkTractsToFiberEndingsImageFilter.cpp

itkTractsToFiberEndingsImageFilter.h

itkTractsToRgbaImageFilter.cpp

itkTractsToRgbaImageFilter.h

Testing/

mitkFiberBundleReaderWriterTest.cpp

mitkFiberExtractionTest.cpp

mitkFiberMapper3DTest.cpp

mitkFiberProcessingTest.cpp

mitkFiberTransformationTest.cpp

mitkGibbsTrackingTest.cpp

mitkMachineLearningTrackingTest.cpp

mitkPeakShImageReaderTest.cpp

mitkStreamlineTractographyTest.cpp

mitkStreamlineTractographyParameters.cpp

mitkStreamlineTractographyParameters.h

MriSimulation/

Algorithms/

itkDftImageFilter.cpp

itkDftImageFilter.h

itkFibersFromPlanarFiguresFilter.cpp

itkFibersFromPlanarFiguresFilter.h

itkFieldmapGeneratorFilter.cpp

itkFieldmapGeneratorFilter.h

itkKspaceImageFilter.cpp

itkKspaceImageFilter.h

itkRandomPhantomFilter.cpp

itkRandomPhantomFilter.h

itkTractsToDWIImageFilter.cpp

itkTractsToDWIImageFilter.h

Sequences/

mitkAcquisitionType.h

mitkConventionalSpinEcho.h

mitkFastSpinEcho.h

mitkSingleShotEpi.h

SignalModels/

mitkAstroStickModel.cpp

mitkAstroStickModel.h

mitkBallModel.cpp

mitkBallModel.h

mitkChiSquareNoiseModel.cpp

mitkChiSquareNoiseModel.h

mitkDiffusionNoiseModel.h

mitkDiffusionSignalModel.h

mitkRicianNoiseModel.cpp

mitkRicianNoiseModel.h

Testing/

mitkFiberGenerationTest.cpp

mitkFiberfoxSignalGenerationBrainSliceTest.cpp

mitkFiberfoxSignalGenerationTest.cpp

mitkFiberfoxParameters.cpp

mitkFiberfoxParameters.h

Plugins/

org.mitk.gui.qt.diffusionimaging.connectomics/

manifest_headers.cmake

src/

QmitkFreeSurferParcellationHandler.cpp

QmitkFreeSurferParcellationHandler.h

QmitkFreeSurferParcellationWidget.cpp

QmitkFreeSurferParcellationWidget.h

internal/

Perspectives/

QmitkConnectomicsPerspective.cpp

QmitkConnectomicsPerspective.h

QmitkConnectomicsDataView.cpp

QmitkConnectomicsDataView.h

QmitkConnectomicsNetworkOperationsView.cpp

QmitkConnectomicsNetworkOperationsView.h

QmitkConnectomicsStatisticsView.cpp

QmitkConnectomicsStatisticsView.h

QmitkNetworkHistogramCanvas.cpp

QmitkNetworkHistogramCanvas.h

QmitkRandomParcellationView.cpp

QmitkRandomParcellationView.h

mitkPluginActivator.cpp

mitkPluginActivator.h

org.mitk.gui.qt.diffusionimaging.denoising/

manifest_headers.cmake

src/

internal/

QmitkDenoisingView.cpp

QmitkDenoisingView.h

mitkPluginActivator.cpp

mitkPluginActivator.h

org.mitk.gui.qt.diffusionimaging.fiberfox/

manifest_headers.cmake

src/

QmitkAstrosticksModelParametersWidget.cpp

QmitkAstrosticksModelParametersWidget.h

QmitkBallModelParametersWidget.cpp

QmitkBallModelParametersWidget.h

QmitkDotModelParametersWidget.cpp

QmitkDotModelParametersWidget.h

QmitkPrototypeSignalParametersWidget.cpp

QmitkPrototypeSignalParametersWidget.h

QmitkStickModelParametersWidget.cpp

QmitkStickModelParametersWidget.h

QmitkTensorModelParametersWidget.cpp

QmitkTensorModelParametersWidget.h

QmitkZeppelinModelParametersWidget.cpp

QmitkZeppelinModelParametersWidget.h

internal/

Perspectives/

QmitkDIAppSyntheticDataGenerationPerspective.cpp

QmitkDIAppSyntheticDataGenerationPerspective.h

QmitkFiberGenerationView.cpp

QmitkFiberGenerationView.h

QmitkFiberfoxView.cpp

QmitkFiberfoxView.h

QmitkFieldmapGeneratorView.cpp

QmitkFieldmapGeneratorView.h

mitkPluginActivator.cpp

mitkPluginActivator.h

org.mitk.gui.qt.diffusionimaging.fiberprocessing/

manifest_headers.cmake

src/

internal/

Perspectives/

QmitkFiberProcessingPerspective.cpp

QmitkFiberProcessingPerspective.h

QmitkFiberClusteringView.cpp

QmitkFiberClusteringView.h

QmitkFiberFitView.cpp

QmitkFiberFitView.h

QmitkFiberProcessingView.cpp

QmitkFiberProcessingView.h

QmitkFiberQuantificationView.cpp

QmitkFiberQuantificationView.h

QmitkTractometryView.cpp

QmitkTractometryView.h

mitkPluginActivator.cpp

mitkPluginActivator.h

org.mitk.gui.qt.diffusionimaging.ivim/

manifest_headers.cmake

src/

QmitkIVIMWidget.cpp

QmitkIVIMWidget.h

QmitkKurtosisWidget.cpp

QmitkKurtosisWidget.h

internal/

Perspectives/

QmitkDIAppIVIMPerspective.cpp

QmitkDIAppIVIMPerspective.h

QmitkIVIMView.cpp

QmitkIVIMView.h

mitkPluginActivator.cpp

mitkPluginActivator.h

org.mitk.gui.qt.diffusionimaging.odfpeaks/

manifest_headers.cmake

src/

internal/

QmitkOdfMaximaExtractionView.cpp

QmitkOdfMaximaExtractionView.h

mitkPluginActivator.cpp

mitkPluginActivator.h

org.mitk.gui.qt.diffusionimaging.partialvolume/

manifest_headers.cmake

src/

QmitkPartialVolumeAnalysisWidget.cpp

QmitkPartialVolumeAnalysisWidget.h

internal/

QmitkPartialVolumeAnalysisView.cpp

QmitkPartialVolumeAnalysisView.h

mitkPluginActivator.cpp

mitkPluginActivator.h

org.mitk.gui.qt.diffusionimaging.preprocessing/

manifest_headers.cmake

src/

internal/

QmitkDwiPreprocessingPerspective.cpp

QmitkDwiPreprocessingPerspective.h

QmitkPreprocessingView.cpp

QmitkPreprocessingView.h

mitkPluginActivator.cpp

mitkPluginActivator.h

org.mitk.gui.qt.diffusionimaging.python/

manifest_headers.cmake

src/

internal/

QmitkBrainExtractionView.cpp

QmitkBrainExtractionView.h

QmitkDipyReconstructionsView.cpp

QmitkDipyReconstructionsView.h

QmitkTractSegView.cpp

QmitkTractSegView.h

mitkPluginActivator.cpp

mitkPluginActivator.h

org.mitk.gui.qt.diffusionimaging.reconstruction/

manifest_headers.cmake

src/

QmitkODFDetailsWidget.cpp

QmitkODFDetailsWidget.h

QmitkODFRenderWidget.cpp

QmitkODFRenderWidget.h

QmitkResidualAnalysisWidget.cpp

QmitkResidualAnalysisWidget.h

QmitkResidualViewWidget.cpp

QmitkResidualViewWidget.h

internal/

Perspectives/

QmitkQuantificationPerspective.cpp

QmitkQuantificationPerspective.h

QmitkReconstructionPerspective.cpp

QmitkReconstructionPerspective.h

QmitkDiffusionQuantificationView.cpp

QmitkDiffusionQuantificationView.h

QmitkODFDetailsView.cpp

QmitkODFDetailsView.h

QmitkQBallReconstructionView.cpp

QmitkQBallReconstructionView.h

QmitkTensorReconstructionView.cpp

QmitkTensorReconstructionView.h

mitkPluginActivator.cpp

mitkPluginActivator.h

org.mitk.gui.qt.diffusionimaging.registration/

manifest_headers.cmake

src/

internal/

QmitkHeadMotionCorrectionView.cpp

QmitkHeadMotionCorrectionView.h

QmitkSimpleRegistrationView.cpp

QmitkSimpleRegistrationView.h

mitkPluginActivator.cpp

mitkPluginActivator.h

org.mitk.gui.qt.diffusionimaging.tbss/

manifest_headers.cmake

src/

QmitkTbssRoiAnalysisWidget.cpp

QmitkTbssRoiAnalysisWidget.h

internal/

QmitkTbssMetaTableModel.cpp

QmitkTbssMetaTableModel.h

QmitkTbssSkeletonizationView.cpp

QmitkTbssSkeletonizationView.h

QmitkTbssTableModel.cpp

QmitkTbssTableModel.h

QmitkTractbasedSpatialStatisticsView.cpp

QmitkTractbasedSpatialStatisticsView.h

mitkPluginActivator.cpp

mitkPluginActivator.h

org.mitk.gui.qt.diffusionimaging.tractography/

manifest_headers.cmake

src/

internal/

Perspectives/

QmitkGibbsTractographyPerspective.cpp

QmitkGibbsTractographyPerspective.h

QmitkStreamlineTractographyPerspective.cpp

QmitkStreamlineTractographyPerspective.h

QmitkGibbsTrackingView.cpp

QmitkGibbsTrackingView.h

QmitkStreamlineTrackingView.cpp

QmitkStreamlineTrackingView.h

mitkPluginActivator.cpp

mitkPluginActivator.h

org.mitk.gui.qt.diffusionimaging/

manifest_headers.cmake

src/

internal/

Perspectives/

QmitkDiffusionDefaultPerspective.cpp

QmitkDiffusionDefaultPerspective.h

QmitkSegmentationPerspective.cpp

QmitkSegmentationPerspective.h

QmitkControlVisualizationPropertiesView.h

QmitkDicomTractogramTagEditorView.cpp

QmitkDicomTractogramTagEditorView.h

QmitkDiffusionDicomImportView.cpp

QmitkDiffusionDicomImportView.h

deprecated/

QmitkDiffusionTensorEstimation.cpp

QmitkDiffusionTensorEstimation.h

QmitkDiffusionTensorIcon.h

mitkPluginActivator.cpp

mitkPluginActivator.h

org.mitk.gui.qt.diffusionimagingapp/

manifest_headers.cmake

src/

QmitkDiffusionImagingAppApplication.cpp

QmitkDiffusionImagingAppApplication.h

QmitkDiffusionImagingAppWorkbenchAdvisor.cpp

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internal/

Perspectives/

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QmitkWelcomePerspective.h

QmitkDiffusionApplicationPlugin.cpp

QmitkDiffusionApplicationPlugin.h

QmitkDiffusionImagingAppIntroPart.cpp

QmitkDiffusionImagingAppIntroPart.h

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Plugins/org.mitk.gui.qt.diffusionimagingapp/src/internal/QmitkDiffusionApplicationPlugin.h

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Plugins/org.mitk.gui.qt.diffusionimagingapp/src/internal/QmitkDiffusionImagingAppIntroPart.cpp

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Plugins/org.mitk.gui.qt.diffusionimagingapp/src/internal/QmitkDiffusionImagingAppIntroPart.h

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Merge branch 'T26894-Copyright'308f897735b8Actions

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rMITKDIFF308f897735b8

Applications/Diffusion/MitkDiffusion.cpp

Applications/Diffusion/QDiffusionImagingSplashScreen.cpp

Applications/Diffusion/QDiffusionImagingSplashScreen.h

CMakeExternals/BetData.h.in

Modules/Connectomics/Algorithms/BrainParcellation/mitkCostFunctionBase.cpp

Modules/Connectomics/Algorithms/BrainParcellation/mitkCostFunctionBase.h

Modules/Connectomics/Algorithms/BrainParcellation/mitkRandomParcellationGenerator.cpp

Modules/Connectomics/Algorithms/BrainParcellation/mitkRandomParcellationGenerator.h

Modules/Connectomics/Algorithms/BrainParcellation/mitkRegionVoxelCounter.cpp

Modules/Connectomics/Algorithms/BrainParcellation/mitkRegionVoxelCounter.h

Modules/Connectomics/Algorithms/itkConnectomicsNetworkToConnectivityMatrixImageFilter.cpp

Modules/Connectomics/Algorithms/itkConnectomicsNetworkToConnectivityMatrixImageFilter.h

Modules/Connectomics/Algorithms/mitkConnectomicsBetweennessHistogram.cpp

Modules/Connectomics/Algorithms/mitkConnectomicsBetweennessHistogram.h

Modules/Connectomics/Algorithms/mitkConnectomicsDegreeHistogram.cpp

Modules/Connectomics/Algorithms/mitkConnectomicsDegreeHistogram.h

Modules/Connectomics/Algorithms/mitkConnectomicsHistogramBase.cpp

Modules/Connectomics/Algorithms/mitkConnectomicsHistogramBase.h

Modules/Connectomics/Algorithms/mitkConnectomicsHistogramCache.cpp

Modules/Connectomics/Algorithms/mitkConnectomicsHistogramCache.h

Modules/Connectomics/Algorithms/mitkConnectomicsNetworkConverter.cpp

Modules/Connectomics/Algorithms/mitkConnectomicsNetworkConverter.h

Modules/Connectomics/Algorithms/mitkConnectomicsNetworkCreator.cpp

Modules/Connectomics/Algorithms/mitkConnectomicsNetworkCreator.h

Modules/Connectomics/Algorithms/mitkConnectomicsNetworkThresholder.cpp

Modules/Connectomics/Algorithms/mitkConnectomicsNetworkThresholder.h

Modules/Connectomics/Algorithms/mitkConnectomicsShortestPathHistogram.cpp

Modules/Connectomics/Algorithms/mitkConnectomicsShortestPathHistogram.h

Modules/Connectomics/Algorithms/mitkConnectomicsSimulatedAnnealingCostFunctionBase.cpp

Modules/Connectomics/Algorithms/mitkConnectomicsSimulatedAnnealingCostFunctionBase.h

Modules/Connectomics/Algorithms/mitkConnectomicsSimulatedAnnealingCostFunctionModularity.cpp

Modules/Connectomics/Algorithms/mitkConnectomicsSimulatedAnnealingCostFunctionModularity.h

Modules/Connectomics/Algorithms/mitkConnectomicsSimulatedAnnealingManager.cpp

Modules/Connectomics/Algorithms/mitkConnectomicsSimulatedAnnealingManager.h

Modules/Connectomics/Algorithms/mitkConnectomicsSimulatedAnnealingPermutationBase.cpp

Modules/Connectomics/Algorithms/mitkConnectomicsSimulatedAnnealingPermutationBase.h

Modules/Connectomics/Algorithms/mitkConnectomicsSimulatedAnnealingPermutationModularity.cpp

Modules/Connectomics/Algorithms/mitkConnectomicsSimulatedAnnealingPermutationModularity.h

Modules/Connectomics/Algorithms/mitkConnectomicsStatisticsCalculator.cpp

Modules/Connectomics/Algorithms/mitkConnectomicsStatisticsCalculator.h

Modules/Connectomics/Algorithms/mitkConnectomicsSyntheticNetworkGenerator.cpp

Modules/Connectomics/Algorithms/mitkConnectomicsSyntheticNetworkGenerator.h

Modules/Connectomics/Algorithms/mitkCorrelationCalculator.h

Modules/Connectomics/Algorithms/mitkCorrelationCalculator.txx

Modules/Connectomics/Algorithms/mitkFreeSurferParcellationTranslator.cpp

Modules/Connectomics/Algorithms/mitkFreeSurferParcellationTranslator.h

Modules/Connectomics/IODataStructures/mitkConnectomicsConstantsManager.cpp

Modules/Connectomics/IODataStructures/mitkConnectomicsConstantsManager.h

Modules/Connectomics/IODataStructures/mitkConnectomicsNetwork.cpp

Modules/Connectomics/IODataStructures/mitkConnectomicsNetwork.h

Modules/Connectomics/IODataStructures/mitkConnectomicsNetworkProperties.h

Modules/Connectomics/Rendering/mitkConnectomicsEnumerationSubclassesSerializer.cpp

Modules/Connectomics/Rendering/mitkConnectomicsNetworkMapper3D.cpp

Modules/Connectomics/Rendering/mitkConnectomicsNetworkMapper3D.h

Modules/Connectomics/Rendering/mitkConnectomicsRenderingEdgeColorParameterProperty.cpp

Modules/Connectomics/Rendering/mitkConnectomicsRenderingEdgeColorParameterProperty.h

Modules/Connectomics/Rendering/mitkConnectomicsRenderingEdgeFilteringProperty.cpp

Modules/Connectomics/Rendering/mitkConnectomicsRenderingEdgeFilteringProperty.h

Modules/Connectomics/Rendering/mitkConnectomicsRenderingEdgeRadiusParameterProperty.cpp

Modules/Connectomics/Rendering/mitkConnectomicsRenderingEdgeRadiusParameterProperty.h

Modules/Connectomics/Rendering/mitkConnectomicsRenderingEdgeThresholdParameterProperty.cpp

Modules/Connectomics/Rendering/mitkConnectomicsRenderingEdgeThresholdParameterProperty.h

Modules/Connectomics/Rendering/mitkConnectomicsRenderingNodeColorParameterProperty.cpp

Modules/Connectomics/Rendering/mitkConnectomicsRenderingNodeColorParameterProperty.h

Modules/Connectomics/Rendering/mitkConnectomicsRenderingNodeFilteringProperty.cpp

Modules/Connectomics/Rendering/mitkConnectomicsRenderingNodeFilteringProperty.h

Modules/Connectomics/Rendering/mitkConnectomicsRenderingNodeRadiusParameterProperty.cpp

Modules/Connectomics/Rendering/mitkConnectomicsRenderingNodeRadiusParameterProperty.h

Modules/Connectomics/Rendering/mitkConnectomicsRenderingNodeThresholdParameterProperty.cpp

Modules/Connectomics/Rendering/mitkConnectomicsRenderingNodeThresholdParameterProperty.h

Modules/Connectomics/Rendering/mitkConnectomicsRenderingProperties.h

Modules/Connectomics/Rendering/mitkConnectomicsRenderingSchemeProperty.cpp

Merge branch 'T26894-Copyright'
308f897735b8
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