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Diffusion MITK a8ebddc1f12e

Moved cmdapps
a8ebddc1f12e
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Description

Moved cmdapps

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Provenance
neherAuthored on Aug 8 2018, 12:56 PM
neherPushed on Aug 8 2018, 12:58 PM
Parents
rMITK2612255ce0cb: Added tract distance calculation
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PathSizePackages
CMake/
BuildConfigurations/
O1: MITK Reviewer Group I
O1: MITK Reviewer Group I
Modules/
DiffusionImaging/
Connectomics/
DiffusionCmdApps/
Connectomics/
Connectomics/
cmdapps/
DiffusionCmdApps/
FiberTracking/
cmdapps/
FiberProcessing/
Fiberfox/
Misc/
Tractography/
TractographyEvaluation/
TractographyEvaluation/
cmdapps/
FiberProcessing/
DiffusionCmdApps/
DiffusionCore/
Misc/
cmdapps/
Python/
cmdapps_python/
DiffusionCmdApps/
Quantification/
Quantification/
cmdapps/
DiffusionCore/
FiberTracking/
Algorithms/
Quantification/
Plugins/
org.mitk.gui.qt.diffusionimaging.fiberprocessing/
src/
internal/

rMITKa8ebddc1f12e

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CMake/BuildConfigurations/DiffusionAll.cmake

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CMake/BuildConfigurations/DiffusionRelease.cmake

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Modules/DiffusionImaging/CMakeLists.txt

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Modules/DiffusionImaging/Connectomics/CMakeLists.txt

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Modules/DiffusionImaging/Connectomics/cmdapps

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Modules/DiffusionImaging/Connectomics/cmdapps/CMakeLists.txt

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Modules/DiffusionImaging/Connectomics/cmdapps/NetworkCreation.cpp

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Modules/DiffusionImaging/Connectomics/cmdapps/NetworkStatistics.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/CMakeLists.txt

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Modules/DiffusionImaging/DiffusionCmdApps/Connectomics/CMakeLists.txt

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Modules/DiffusionImaging/DiffusionCmdApps/Connectomics/NetworkCreation.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Connectomics/NetworkStatistics.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/FiberProcessing/CMakeLists.txt

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Modules/DiffusionImaging/DiffusionCmdApps/FiberProcessing/FiberClustering.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/FiberProcessing/FiberDirectionExtraction.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/FiberProcessing/FiberExtraction.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/FiberProcessing/FiberExtractionRoi.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/FiberProcessing/FiberJoin.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/FiberProcessing/FiberProcessing.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/FiberProcessing/FitFibersToImage.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/FiberProcessing/Sift2WeightCopy.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/FiberProcessing/TractDensity.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/FiberProcessing/TractDensityFilter.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Fiberfox/CMakeLists.txt

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Modules/DiffusionImaging/DiffusionCmdApps/Fiberfox/Fiberfox.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Fiberfox/FiberfoxOptimization.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Misc/CMakeLists.txt

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Modules/DiffusionImaging/DiffusionCmdApps/Misc/CopyGeometry.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Misc/DICOMLoader.cmake

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Modules/DiffusionImaging/DiffusionCmdApps/Misc/DImp.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Misc/DReg.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Misc/DiffusionDICOMLoader.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Misc/DmriDenoising.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Misc/FileFormatConverter.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Misc/FlipPeaks.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Misc/HeadMotionCorrection.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Misc/ImageResampler.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Misc/PeakExtraction.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Misc/Registration.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Misc/ResampleGradients.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Misc/RoundBvalues.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Misc/ShToOdfImage.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Python/BrainExtraction.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Python/CMakeLists.txt

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Modules/DiffusionImaging/DiffusionCmdApps/Quantification/CMakeLists.txt

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Modules/DiffusionImaging/DiffusionCmdApps/Quantification/DiffusionIndices.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Quantification/DiffusionKurtosisFit.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Quantification/MultishellMethods.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Quantification/QballReconstruction.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Quantification/TensorDerivedMapsExtraction.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Quantification/TensorReconstruction.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Tractography/CMakeLists.txt

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Modules/DiffusionImaging/DiffusionCmdApps/Tractography/GlobalTractography.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Tractography/RfTraining.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/Tractography/StreamlineTractography.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/TractographyEvaluation/AnchorConstrainedPlausibility.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/TractographyEvaluation/CMakeLists.txt

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Modules/DiffusionImaging/DiffusionCmdApps/TractographyEvaluation/CalculateOverlap.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/TractographyEvaluation/CheckEpsAndOverlap.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/TractographyEvaluation/ExtractSimilarTracts.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/TractographyEvaluation/GetOverlappingTracts.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/TractographyEvaluation/LocalDirectionalFiberPlausibility.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/TractographyEvaluation/MergeOverlappingTracts.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/TractographyEvaluation/PeaksAngularError.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/TractographyEvaluation/ReferenceSimilarity.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/TractographyEvaluation/TractDistance.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/TractographyEvaluation/TractometerMetrics.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/files.cmake

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Modules/DiffusionImaging/DiffusionCmdApps/mitkDiffusionDataIOHelper.cpp

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Modules/DiffusionImaging/DiffusionCmdApps/mitkDiffusionDataIOHelper.h

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Modules/DiffusionImaging/DiffusionCore/CMakeLists.txt

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Modules/DiffusionImaging/DiffusionCore/cmdapps

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Modules/DiffusionImaging/DiffusionCore/cmdapps/CMakeLists.txt

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Modules/DiffusionImaging/DiffusionCore/cmdapps/CopyGeometry.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/DICOMLoader.cmake

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Modules/DiffusionImaging/DiffusionCore/cmdapps/DImp.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/DReg.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/DiffusionDICOMLoader.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/DmriDenoising.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/HeadMotionCorrection.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/ImageResampler.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/Registration.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/ResampleGradients.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/RoundBvalues.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/ShToOdfImage.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps_python

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Modules/DiffusionImaging/DiffusionCore/cmdapps_python/BrainExtraction.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps_python/CMakeLists.txt

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Modules/DiffusionImaging/FiberTracking/Algorithms/itkFiberExtractionFilter.cpp

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Modules/DiffusionImaging/FiberTracking/Algorithms/itkTractDistanceFilter.cpp

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Modules/DiffusionImaging/FiberTracking/Algorithms/itkTractDistanceFilter.h

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Modules/DiffusionImaging/FiberTracking/CMakeLists.txt

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Modules/DiffusionImaging/FiberTracking/cmdapps

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/CMakeLists.txt

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberClustering.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberDirectionExtraction.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberExtraction.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberExtractionRoi.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberJoin.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberProcessing.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FitFibersToImage.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/GetOverlappingTracts.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/Sift2WeightCopy.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/TractDensity.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/TractDensityFilter.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/TractDistance.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Fiberfox

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Modules/DiffusionImaging/FiberTracking/cmdapps/Fiberfox/CMakeLists.txt

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Modules/DiffusionImaging/FiberTracking/cmdapps/Fiberfox/Fiberfox.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Fiberfox/FiberfoxOptimization.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Misc

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Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/CMakeLists.txt

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Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/FileFormatConverter.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/FlipPeaks.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/PeakExtraction.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/PythonTest.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography

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Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/CMakeLists.txt

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Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/GlobalTractography.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/RfTraining.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/StreamlineTractography.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/AnchorConstrainedPlausibility.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/CMakeLists.txt

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/CalculateOverlap.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/CheckEpsAndOverlap.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/ExtractSimilarTracts.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/LocalDirectionalFiberPlausibility.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/MergeOverlappingTracts.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/PeaksAngularError.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/TractometerMetrics.cpp

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Modules/DiffusionImaging/MiniApps

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Modules/DiffusionImaging/MiniApps/ExtractAllGradients.cpp

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Modules/DiffusionImaging/Quantification/CMakeLists.txt

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Modules/DiffusionImaging/Quantification/cmdapps

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Modules/DiffusionImaging/Quantification/cmdapps/CMakeLists.txt

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Modules/DiffusionImaging/Quantification/cmdapps/DiffusionIndices.cpp

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Modules/DiffusionImaging/Quantification/cmdapps/DiffusionKurtosisFit.cpp

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Modules/DiffusionImaging/Quantification/cmdapps/MultishellMethods.cpp

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Modules/DiffusionImaging/Quantification/cmdapps/QballReconstruction.cpp

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Modules/DiffusionImaging/Quantification/cmdapps/TensorDerivedMapsExtraction.cpp

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Modules/DiffusionImaging/Quantification/cmdapps/TensorReconstruction.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingView.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingView.h

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingViewControls.ui

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