Diffusion MITK aaa758a4a876

integrated work from bachelor thesis
aaa758a4a876Unpublished
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Description

integrated work from bachelor thesis
Includes a new python service implementation which executes python code with the Python/C API including unit test for it.
The code for this is in the Modules Python and PythonService. The old python service implementation is moved to QtPythonService.
Also, a interface was implemented to integrate deep learning python projects for segmentation in MITK.
New methods that are integrated should appear in the Workbench in the segmentation plugin -> 3D Tools.
The code for this is in the Module DeepLearningSegmentation and the plugin org.mitk.gui.qt.deeplearningsegmentation.

Details

Provenance

kahl	Authored on Nov 4 2020, 4:36 PM
kahl	Pushed on Nov 4 2020, 4:37 PM

Parents

rMITKc39570ddfcb0: Merge branch 'bugfix/T26745-MinorFixes' into develop

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Changes (82)

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Packages

Documentation/

Doxygen/

3-DeveloperManual/

MITKModuleManualsList.dox

Toolkit/

ModuleManuals/

MITKModuleManualsList.dox

Modules/

DeepLearningSegmentation

DeepLearningSegmentationTool.cpp

DeepLearningSegmentationTool.h

DeveloperManual

DeepLearningSegmentation.dox

ModuleList.cmake

Python/

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PythonPath.h.in

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mitkPythonActivator.cpp

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mitkPythonService.cpp

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mitkPythonService.h

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documentation/

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mitkIPythonService.cpp

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mitkIPythonService.h

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hello_world_project

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call_hello_in_subfolder.py

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hello_subfolder

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hello_to_call.py

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mitkPythonObserverMock.cpp

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mitkPythonTest.cpp

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mitkQtPythonTest.cpp

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	test/

	mitkPythonObserverMock.h
	mitkIPythonService.cpp

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	Python/	test/	hello_world_project/
	Biophotonics/	python/	iMC/


	mc/

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	hello_subfolder/
	mc/

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mitkPythonService.cpp

			PythonService/
	Python/	autoload/	PythonService/

PythonPath.h.in

mitkPythonActivator.cpp

mitkPythonService.h

QtPython/

QmitkCtkPythonShell.cpp

Testing/

	mitkPythonConsoleTest.cpp
	mitkPythonTest.cpp

mitkPythonTest.cpp

QtPythonService

mitkQtPythonTest.cpp

	QtPythonService/
	Python/


	autoload/	PythonService/

PythonPath.h.in

	mitkQtPythonActivator.cpp/
	autoload/	PythonService/


	mitkPythonActivator.cpp

	mitkQtPythonService.cpp/
	autoload/	PythonService/


	mitkPythonService.cpp

	mitkQtPythonService.h/
	autoload/	PythonService/


	mitkPythonService.h

	Modules/
	Examples/

	Python/		test/
	FirstSteps/	NewModule/	test/

O3: MITK Reviewer Group II

	QtPythonService/		test/
	FirstSteps/	NewModule/	test/

Plugins/

PluginList.cmake

org.mitk.gui.qt.deeplearningsegmentation

manifest_headers.cmake

DeepLearningSegmentationGUI.cpp

DeepLearningSegmentationGUI.h

DeepLearningSegmentationGUI.ui

SegmentationResultHandler.cpp

SegmentationResultHandler.h

SegmentationWorker.cpp

SegmentationWorker.h

org_mitk_gui_qt_deeplearningsegmentation_Activator.h

	Plugins/	org.mitk.gui.qt.deeplearningsegmentation/		resources/
	Applications/	PluginGenerator/	PluginTemplate/	resources/

	Plugins/	org.mitk.gui.qt.deeplearningsegmentation/	src/	internal/
			Modules/	Python/

	org_mitk_gui_qt_deeplearningsegmentation_Activator.cpp
	mitkIPythonService.cpp

rMITKaaa758a4a876

Documentation/Doxygen/3-DeveloperManual/MITKModuleManualsList.dox

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Documentation/Doxygen/3-DeveloperManual/Toolkit/ModuleManuals/MITKModuleManualsList.dox

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Modules/DeepLearningSegmentation/CMakeLists.txt

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Modules/DeepLearningSegmentation/DeepLearningSegmentationTool.cpp

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Modules/DeepLearningSegmentation/DeepLearningSegmentationTool.h

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Modules/DeepLearningSegmentation/documentation/DeveloperManual/DeepLearningSegmentation.dox

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Modules/DeepLearningSegmentation/files.cmake

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Modules/ModuleList.cmake

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Modules/Python/CMakeLists.txt

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Modules/Python/autoload

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Modules/Python/autoload/PythonService

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Modules/Python/autoload/PythonService/CMakeLists.txt

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Modules/Python/autoload/PythonService/PythonPath.h.in

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Modules/Python/autoload/PythonService/files.cmake

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Modules/Python/autoload/PythonService/mitkPythonActivator.cpp

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Modules/Python/autoload/PythonService/mitkPythonService.cpp

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Modules/Python/autoload/PythonService/mitkPythonService.h

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Modules/Python/documentation/mitkPython.dox

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Modules/Python/mitkIPythonService.cpp

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Modules/Python/mitkIPythonService.h

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Modules/Python/test/CMakeLists.txt

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Modules/Python/test/files.cmake

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Modules/Python/test/hello_world_project/init.py

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Modules/Python/test/hello_world_project/call_hello.py

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Modules/Python/test/hello_world_project/call_hello_in_subfolder.py

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Modules/Python/test/hello_world_project/hello.py

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Modules/Python/test/hello_world_project/hello_subfolder/init.py

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Modules/Python/test/hello_world_project/hello_subfolder/hello.py

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Modules/Python/test/hello_world_project/hello_to_call.py

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Modules/Python/test/mitkPythonObserverMock.cpp

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Modules/Python/test/mitkPythonObserverMock.h

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Modules/Python/test/mitkPythonTest.cpp

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Modules/Python/test/mitkQtPythonTest.cpp

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Modules/PythonService/CMakeLists.txt

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Modules/PythonService/PythonPath.h.in

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Modules/PythonService/files.cmake

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Modules/PythonService/mitkPythonActivator.cpp

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Modules/PythonService/mitkPythonService.cpp

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Modules/PythonService/mitkPythonService.h

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Modules/PythonService/swigpyrun.h

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Modules/QtPython/QmitkCtkPythonShell.cpp

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Modules/QtPython/Testing/CMakeLists.txt

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Modules/QtPython/Testing/files.cmake

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Modules/QtPython/Testing/mitkPythonConsoleTest.cpp

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Modules/QtPython/Testing/mitkPythonTest.cpp

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Modules/QtPythonService/CMakeLists.txt

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Modules/QtPythonService/PythonPath.h.in

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Modules/QtPythonService/files.cmake

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Modules/QtPythonService/mitkQtPythonActivator.cpp

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Modules/QtPythonService/mitkQtPythonService.cpp

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Modules/QtPythonService/mitkQtPythonService.h

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Modules/QtPythonService/test/CMakeLists.txt

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Modules/QtPythonService/test/files.cmake

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Modules/QtPythonService/test/mitkQtPythonTest.cpp

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Plugins/PluginList.cmake

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Plugins/org.mitk.gui.qt.deeplearningsegmentation/CMakeLists.txt

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Plugins/org.mitk.gui.qt.deeplearningsegmentation/files.cmake

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Plugins/org.mitk.gui.qt.deeplearningsegmentation/manifest_headers.cmake

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Plugins/org.mitk.gui.qt.deeplearningsegmentation/plugin.xml

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Plugins/org.mitk.gui.qt.deeplearningsegmentation/resources/icon.xpm

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Plugins/org.mitk.gui.qt.deeplearningsegmentation/src/internal/DeepLearningSegmentationGUI.cpp

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Plugins/org.mitk.gui.qt.deeplearningsegmentation/src/internal/DeepLearningSegmentationGUI.h

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Plugins/org.mitk.gui.qt.deeplearningsegmentation/src/internal/DeepLearningSegmentationGUI.ui

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Plugins/org.mitk.gui.qt.deeplearningsegmentation/src/internal/SegmentationResultHandler.cpp

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Plugins/org.mitk.gui.qt.deeplearningsegmentation/src/internal/SegmentationResultHandler.h

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Plugins/org.mitk.gui.qt.deeplearningsegmentation/src/internal/SegmentationWorker.cpp

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Plugins/org.mitk.gui.qt.deeplearningsegmentation/src/internal/SegmentationWorker.h

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Plugins/org.mitk.gui.qt.deeplearningsegmentation/src/internal/org_mitk_gui_qt_deeplearningsegmentation_Activator.cpp

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Plugins/org.mitk.gui.qt.deeplearningsegmentation/src/internal/org_mitk_gui_qt_deeplearningsegmentation_Activator.h

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