Merge branch 'T24606-SpectralUnmixingFilter' into T24606-MergeSpectralUnmixing
b876b4ba980a
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Description

Merge branch 'T24606-SpectralUnmixingFilter' into T24606-MergeSpectralUnmixing

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holzwart	Authored on Jul 27 2018, 10:35 AM
holzwart	Pushed on Jul 27 2018, 10:37 AM

Parents

rMITKe066839578f0: Corrected volume data extraction
rMITK6830e7beeada: adds significance level to so2 filter

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holzwart committed rMITKb876b4ba980a: Merge branch 'T24606-SpectralUnmixingFilter' into T24606-MergeSpectralUnmixing (authored by holzwart).Jul 27 2018, 10:35 AM

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

6830e7beeada adds significance level to so2 filter
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holzwart
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3125db623bed fixed build warnings/errors for gcc
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• kirchnth
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b6242df7aa21 adds a rounding correction to the sO2 filter and changes some GUI default values
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holzwart
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f6c09c1bed07 test for correct outputs.
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holzwart
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bf088f006a64 simplified check preconditions and checks now if pixel type is float correctly…
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holzwart
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af2b5f20afa6 add SO2 filter test for wrong inputs.
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holzwart
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99428241123e implemented many exception tests and added so far unhandeled exceptions to…
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holzwart
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787b2c8f246d fixed smaller bugs during testing.
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holzwart
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cf028da4045a pulled test on latest changes of plugin to be able to start adding test cases…
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holzwart
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78e9d46a8256 added qt waitcurser.
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holzwart
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59236f5c053a better error handling for llt and ldlt algorihtm.
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holzwart
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718d98e55075 refactoring of SO2 filter class.
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holzwart
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b0bc3a6f24ef add relative error settings to Plugin.
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holzwart
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c9f27410a404 added ToolTips into the GUI.
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holzwart
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cde60c59c65f fixed a implementation bug from refacotring the write buffer.
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holzwart
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422235a6cdf6 updated user manual.
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holzwart
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b2288bdd0242 fixed error handling for usage in the working thread.
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holzwart
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59e108fd655a reimplementation of the write buffer outside the loop over all pixels to save…
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holzwart
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f72d72a0058d refactoring of the SU plugin.
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holzwart
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335539addec9 workthread works now for SU Plugin. Class needs refactoring now.
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holzwart
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a3844ee50e2b reasonable error handling of the Plugin with a QMessageBox.
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holzwart
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976dad21007d finaly solved output problem and add relative error image to output.
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holzwart
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3b47b81304cb solved 'number of output problem'.
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holzwart
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6fbb8afb61cc fixed spacing.
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holzwart
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895b06931fd5 documentation and small changes of the SO2 filter.
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holzwart
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771b02179424 added verbose mode and added show/hide for GUI tables (weights, SO2Settings).
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holzwart
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a899c255254c docu and refactoring(more encapsulation) of the spectral unmixing Plugin.
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holzwart
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04a60cc3511e start with refactoring of Plugin.
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holzwart
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4638ebc18621 additional small changes for the vigra/linear filter and test.
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holzwart
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5a05a5fa3c7a documentation and small changes of the linear spectral unmixing filter as well…
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holzwart
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90e208ccb17c documentation and small changes of the spectral unmixing vigra filter.
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holzwart
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8a06a8a346e5 transfered weights method into vigra class.
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holzwart
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4d36b1f3c1e6 documentation and small changes of the spectral unmixing filter base.
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holzwart
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d5bb1c7779ec minor changes.
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holzwart
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d5428e5a43d9 add float-double cast to vigra class.
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holzwart
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e49298735935 GetFilterInstance Method + renew ouput counter.
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holzwart
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86f17959c4b9 SO2 test works now.
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holzwart
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76c5159c8cda SO2 filter can deal with NAN now.
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holzwart
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32fba71b258d try to implement SO2 settings to test.
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holzwart
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d1bf9b785440 insert SO2 test.
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holzwart
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81dc92b4fb82 now Test allows to test all algorithms in one go.
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holzwart
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f2cfc29a216c minor changes.
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holzwart
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2cabe112ecc2 add Test for Vigra and Simplex class.
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holzwart
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e247fdbb10c2 finalized weighted LS and add write into Simplex file.
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holzwart
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df04799da50d extend sequencing to SO2 filter + add sequence counter.
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holzwart
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f51648aab0a7 add sequenctial image processing.
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holzwart
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78eec625f09c updated test class.
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holzwart
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94c6d617e37a add vigra LS to algrothms.
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holzwart
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4af8458a6579 removed repetitiv code @ vigra class.
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holzwart
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cfdc1a80bdbc refactoring comments & add output counter.
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holzwart
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Changes (43)

Path

Size

Modules/

PhotoacousticsLib/

files.cmake

include/

mitkPALinearSpectralUnmixingFilter.h

mitkPAPropertyCalculator.h

mitkPASpectralUnmixingFilterBase.h

mitkPASpectralUnmixingFilterLagrange.h

mitkPASpectralUnmixingFilterSimplex.h

mitkPASpectralUnmixingFilterVigra.h

mitkPASpectralUnmixingSO2.h

src/

SUFilter

mitkPALinearSpectralUnmixingFilter.cpp

mitkPASpectralUnmixingFilterBase.cpp

mitkPASpectralUnmixingFilterLagrange.cpp

mitkPASpectralUnmixingFilterSimplex.cpp

mitkPASpectralUnmixingFilterVigra.cpp

mitkPASpectralUnmixingSO2.cpp

Utils/

mitkPAPropertyCalculator.cpp

test/

files.cmake

mitkSpectralUnmixingTest.cpp

Plugins/

PluginList.cmake

org.mitk.gui.qt.photoacoustics.spectralunmixing

manifest_headers.cmake

SpectralUnmixingControls.ui

org_mitk_gui_qt_photoacoustics_spectralunmixing_Activator.cpp

org_mitk_gui_qt_photoacoustics_spectralunmixing_Activator.h

rMITKb876b4ba980a

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Modules/PhotoacousticsLib/files.cmake

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Modules/PhotoacousticsLib/include/mitkPALinearSpectralUnmixingFilter.h

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Modules/PhotoacousticsLib/include/mitkPAPropertyCalculator.h

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Modules/PhotoacousticsLib/include/mitkPASpectralUnmixingFilterBase.h

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Modules/PhotoacousticsLib/include/mitkPASpectralUnmixingFilterLagrange.h

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Modules/PhotoacousticsLib/include/mitkPASpectralUnmixingFilterSimplex.h

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Modules/PhotoacousticsLib/include/mitkPASpectralUnmixingFilterVigra.h

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Modules/PhotoacousticsLib/include/mitkPASpectralUnmixingSO2.h

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Modules/PhotoacousticsLib/src/SUFilter/mitkPALinearSpectralUnmixingFilter.cpp

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Modules/PhotoacousticsLib/src/SUFilter/mitkPASpectralUnmixingFilterBase.cpp

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Modules/PhotoacousticsLib/src/SUFilter/mitkPASpectralUnmixingFilterLagrange.cpp

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Modules/PhotoacousticsLib/src/SUFilter/mitkPASpectralUnmixingFilterSimplex.cpp

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Modules/PhotoacousticsLib/src/SUFilter/mitkPASpectralUnmixingFilterVigra.cpp

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Modules/PhotoacousticsLib/src/SUFilter/mitkPASpectralUnmixingSO2.cpp

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Modules/PhotoacousticsLib/src/Utils/mitkPAPropertyCalculator.cpp

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Modules/PhotoacousticsLib/test/files.cmake

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Modules/PhotoacousticsLib/test/mitkSpectralUnmixingTest.cpp

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Plugins/PluginList.cmake

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/CMakeLists.txt

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/documentation/UserManual/GUI.PNG

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/documentation/UserManual/Manual.dox

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/documentation/UserManual/cpp.PNG

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/documentation/UserManual/header.PNG

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/documentation/UserManual/icon.png

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/documentation/UserManual/plugin.PNG

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/documentation/doxygen/modules.dox

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/files.cmake

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/manifest_headers.cmake

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/plugin.xml

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/resources/spectralunmixing.svg

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/src/internal/SpectralUnmixing.cpp

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/src/internal/SpectralUnmixing.h

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/src/internal/SpectralUnmixingControls.ui

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/src/internal/org_mitk_gui_qt_photoacoustics_spectralunmixing_Activator.cpp

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/src/internal/org_mitk_gui_qt_photoacoustics_spectralunmixing_Activator.h

Merge branch 'T24606-SpectralUnmixingFilter' into T24606-MergeSpectralUnmixingb876b4ba980aActions

Description

Details

Event Timeline

Merged Changes

Changes (43)

rMITKb876b4ba980a

Modules/PhotoacousticsLib/files.cmake

Modules/PhotoacousticsLib/include/mitkPALinearSpectralUnmixingFilter.h

Modules/PhotoacousticsLib/include/mitkPAPropertyCalculator.h

Modules/PhotoacousticsLib/include/mitkPASpectralUnmixingFilterBase.h

Modules/PhotoacousticsLib/include/mitkPASpectralUnmixingFilterLagrange.h

Modules/PhotoacousticsLib/include/mitkPASpectralUnmixingFilterSimplex.h

Modules/PhotoacousticsLib/include/mitkPASpectralUnmixingFilterVigra.h

Modules/PhotoacousticsLib/include/mitkPASpectralUnmixingSO2.h

Modules/PhotoacousticsLib/src/SUFilter/mitkPALinearSpectralUnmixingFilter.cpp

Modules/PhotoacousticsLib/src/SUFilter/mitkPASpectralUnmixingFilterBase.cpp

Modules/PhotoacousticsLib/src/SUFilter/mitkPASpectralUnmixingFilterLagrange.cpp

Modules/PhotoacousticsLib/src/SUFilter/mitkPASpectralUnmixingFilterSimplex.cpp

Modules/PhotoacousticsLib/src/SUFilter/mitkPASpectralUnmixingFilterVigra.cpp

Modules/PhotoacousticsLib/src/SUFilter/mitkPASpectralUnmixingSO2.cpp

Modules/PhotoacousticsLib/src/Utils/mitkPAPropertyCalculator.cpp

Modules/PhotoacousticsLib/test/files.cmake

Modules/PhotoacousticsLib/test/mitkSpectralUnmixingTest.cpp

Plugins/PluginList.cmake

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/CMakeLists.txt

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/documentation/UserManual/GUI.PNG

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/documentation/UserManual/Manual.dox

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/documentation/UserManual/cpp.PNG

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/documentation/UserManual/header.PNG

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/documentation/UserManual/icon.png

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/documentation/UserManual/plugin.PNG

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/documentation/doxygen/modules.dox

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/files.cmake

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/manifest_headers.cmake

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/plugin.xml

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/resources/spectralunmixing.svg

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/src/internal/SpectralUnmixing.cpp

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/src/internal/SpectralUnmixing.h

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/src/internal/SpectralUnmixingControls.ui

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/src/internal/org_mitk_gui_qt_photoacoustics_spectralunmixing_Activator.cpp

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/src/internal/org_mitk_gui_qt_photoacoustics_spectralunmixing_Activator.h

Merge branch 'T24606-SpectralUnmixingFilter' into T24606-MergeSpectralUnmixing
b876b4ba980a
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