Merge branch 'bug-16680-MiniAppIntegrationBranch'
c100f2d2dd83
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Merge branch 'bug-16680-MiniAppIntegrationBranch'

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Authored on Jan 9 2014, 3:33 PM

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rMITK26f78d1d5d24: Merge branch 'bug-16680-FiberfoxWorkerThread'
rMITKfeaa724010af: Merge branch 'bug-16763-DicomImportFix_master'

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neher committed rMITKc100f2d2dd83: Merge branch 'bug-16680-MiniAppIntegrationBranch' (authored by neher).Jan 9 2014, 3:33 PM

Merged Changes

26f78d1d5d24 Merge branch 'bug-16680-FiberfoxWorkerThread'
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09effa153106 added core test for epsilon in mitk image equal method
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8d5079fd905c added some status messages
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18d75688b194 fixed NaN direction
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e146f59f698d Fiberfox is not blocking GUI anymore
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c2a75530cc15 added some default selection heuristic
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e987ae83c5db added autosave
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0b0ca79941ae adapted miniapp to multi tensor tracking
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55b0aedfb6b9 external FA image working
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edac57d26d49 nn interpolation working
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ff8b7853f3e8 cleanup
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ce5aeda2dc32 Merge branch 'bug-16492-DiffusionTests' into bug-16248-Headmotion
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3f1678d73e0c added test for qball and tensor reconstruction. fixed the necessary image equal…
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032dd657c1fb added fiber genration test and chi-square noise model
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73fa517b7af7 testing LDFP with ignored missing directions
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11ecef471f3d testing bunlde subtraction and addition
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89e7761bf5ff added testing of binary image fiber extraction
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9608e1b75fcf added fiber extraction test
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65f08f3054c3 added fiber transformation test
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da8b6ccf254c added test for local directional fiber plausibility
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879f1ce2a56d added maxima extraction test
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867e97973e63 added streamline tracking test
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9924fcce4093 finished motion artrifact
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09ce847a8a02 mask image working with motion artifact
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c317bc78ed69 wip
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cf601d9abbca wip
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0505a102558c todo: mask and astrosticks
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9e46eec21b22 wip
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9e9b9ffe872d old peaks
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Changes (104)
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Core/

Code/

Algorithms/

mitkCompareImageDataFilter.cpp

mitkCompareImageDataFilter.h

mitkMultiComponentImageDataComparisonFilter.cpp

DataManagement/

mitkImage.cpp

Testing/

CMakeLists.txt

mitkImageEqualTest.cpp

Modules/

DiffusionImaging/

DiffusionCore/

Algorithms/

Reconstruction/

itkAnalyticalDiffusionQballReconstructionImageFilter.cpp

itkAnalyticalDiffusionQballReconstructionImageFilter.h

itkMrtrixPeakImageConverter.cpp

itkShCoefficientImageExporter.cpp

itkShCoefficientImageExporter.h

IODataStructures/

TensorImages/

mitkNrrdTensorImageReader.cpp

Testing/

CMakeLists.txt

files.cmake

mitkImageReconstructionTest.cpp

files.cmake

FiberTracking/

Algorithms/

itkAddArtifactsToDwiImageFilter.cpp

itkAddArtifactsToDwiImageFilter.h

itkEvaluateDirectionImagesFilter.cpp

itkFibersFromPlanarFiguresFilter.cpp

itkStreamlineTrackingFilter.cpp

itkStreamlineTrackingFilter.h

itkTractsToDWIImageFilter.cpp

itkTractsToDWIImageFilter.h

itkTractsToVectorImageFilter.cpp

IODataStructures/

FiberBundleX/

mitkFiberBundleX.cpp

mitkFiberBundleX.h

SignalModels/

mitkAstroStickModel.cpp

mitkAstroStickModel.h

mitkBallModel.cpp

mitkBallModel.h

	mitkChiSquareNoiseModel.cpp
	mitkDotModel.cpp

	mitkChiSquareNoiseModel.h
	mitkRicianNoiseModel.h

	mitkChisquareNoiseModel.cpp
	mitkDotModel.cpp

	mitkChisquareNoiseModel.h
	mitkRicianNoiseModel.h

mitkDiffusionNoiseModel.h

mitkDiffusionSignalModel.h

mitkDotModel.cpp

mitkDotModel.h

mitkKspaceArtifact.h

mitkRicianNoiseModel.h

Testing/

mitkFiberBundleXTest.cpp

mitkFiberExtractionTest.cpp

mitkFiberGenerationTest.cpp

mitkFiberTransformationTest.cpp

mitkLocalFiberPlausibilityTest.cpp

mitkPeakExtractionTest.cpp

mitkStreamlineTrackingTest.cpp

files.cmake

MiniApps/

CMakeLists.txt

ExportShImage.cpp

FiberFoxProcessing.cpp

GibbsTracking.cpp

	LocalDirectionalFiberPlausibility.cpp
	TractometerAngularErrorTool.cpp

MiniAppManager.cpp

PeakExtraction.cpp

QballReconstruction.cpp

StreamlineTracking.cpp

TensorReconstruction.cpp

TractometerAngularErrorTool.cpp

files.cmake

Plugins/

org.mitk.gui.qt.diffusionimaging/

documentation/

UserManual/

QmitkFiberfoxViewUserManual.dox

resources/

QmitkDiffusionImaging.qrc

src/

internal/

QmitkDiffusionDicomImportView.cpp

QmitkFiberExtractionView.cpp

QmitkFiberExtractionView.h

QmitkFiberfoxView.cpp

QmitkFiberfoxView.h

QmitkFiberfoxViewControls.ui

QmitkOdfMaximaExtractionView.cpp

QmitkStreamlineTrackingView.cpp

QmitkStreamlineTrackingView.h

QmitkStreamlineTrackingViewControls.ui

rMITKc100f2d2dd83

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Core/Code/Algorithms/mitkCompareImageDataFilter.cpp

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Core/Code/Algorithms/mitkCompareImageDataFilter.h

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Core/Code/Algorithms/mitkMultiComponentImageDataComparisonFilter.cpp

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Core/Code/DataManagement/mitkImage.cpp

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Core/Code/Testing/CMakeLists.txt

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Core/Code/Testing/mitkImageEqualTest.cpp

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Modules/DiffusionImaging/DiffusionCore/Algorithms/Reconstruction/itkAnalyticalDiffusionQballReconstructionImageFilter.cpp

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Modules/DiffusionImaging/DiffusionCore/Algorithms/Reconstruction/itkAnalyticalDiffusionQballReconstructionImageFilter.h

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Modules/DiffusionImaging/DiffusionCore/Algorithms/itkMrtrixPeakImageConverter.cpp

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Modules/DiffusionImaging/FiberTracking/Algorithms/itkEvaluateDirectionImagesFilter.cpp

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Modules/DiffusionImaging/FiberTracking/Algorithms/itkFibersFromPlanarFiguresFilter.cpp

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Modules/DiffusionImaging/FiberTracking/Algorithms/itkTractsToDWIImageFilter.cpp

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Modules/DiffusionImaging/FiberTracking/Algorithms/itkTractsToDWIImageFilter.h

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Modules/DiffusionImaging/FiberTracking/Algorithms/itkTractsToVectorImageFilter.cpp

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Modules/DiffusionImaging/FiberTracking/SignalModels/mitkChiSquareNoiseModel.cpp

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Modules/DiffusionImaging/FiberTracking/SignalModels/mitkChisquareNoiseModel.cpp

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Modules/DiffusionImaging/FiberTracking/SignalModels/mitkChisquareNoiseModel.h

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Modules/DiffusionImaging/FiberTracking/SignalModels/mitkDiffusionNoiseModel.h

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Modules/DiffusionImaging/FiberTracking/SignalModels/mitkDotModel.cpp

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Modules/DiffusionImaging/FiberTracking/SignalModels/mitkDotModel.h

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Modules/DiffusionImaging/FiberTracking/SignalModels/mitkRicianNoiseModel.h

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Modules/DiffusionImaging/FiberTracking/SignalModels/mitkTensorModel.cpp

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Modules/DiffusionImaging/FiberTracking/SignalModels/mitkTensorModel.h

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Modules/DiffusionImaging/FiberTracking/Testing/files.cmake

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Modules/DiffusionImaging/FiberTracking/Testing/mitkFiberBundleXTest.cpp

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Modules/DiffusionImaging/FiberTracking/Testing/mitkFiberTransformationTest.cpp

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Modules/DiffusionImaging/FiberTracking/Testing/mitkLocalFiberPlausibilityTest.cpp

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Modules/DiffusionImaging/FiberTracking/Testing/mitkPeakExtractionTest.cpp

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Modules/DiffusionImaging/MiniApps/CMakeLists.txt

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Modules/DiffusionImaging/MiniApps/ExportShImage.cpp

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Modules/DiffusionImaging/MiniApps/FiberFoxProcessing.cpp

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Modules/DiffusionImaging/MiniApps/LocalDirectionalFiberPlausibility.cpp

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Modules/DiffusionImaging/MiniApps/MiniAppManager.cpp

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Modules/DiffusionImaging/MiniApps/PeakExtraction.cpp

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Modules/DiffusionImaging/MiniApps/QballReconstruction.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkDiffusionDicomImportView.cpp

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Merge branch 'bug-16680-MiniAppIntegrationBranch'c100f2d2dd83Actions

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Merged Changes

Changes (104)Show All Changes

Very Large Commit

rMITKc100f2d2dd83

Core/Code/Algorithms/mitkCompareImageDataFilter.cpp

Core/Code/Algorithms/mitkCompareImageDataFilter.h

Core/Code/Algorithms/mitkMultiComponentImageDataComparisonFilter.cpp

Core/Code/DataManagement/mitkImage.cpp

Core/Code/Testing/CMakeLists.txt

Core/Code/Testing/mitkImageEqualTest.cpp

Modules/DiffusionImaging/DiffusionCore/Algorithms/Reconstruction/itkAnalyticalDiffusionQballReconstructionImageFilter.cpp

Modules/DiffusionImaging/DiffusionCore/Algorithms/Reconstruction/itkAnalyticalDiffusionQballReconstructionImageFilter.h

Modules/DiffusionImaging/DiffusionCore/Algorithms/itkMrtrixPeakImageConverter.cpp

Modules/DiffusionImaging/DiffusionCore/Algorithms/itkShCoefficientImageExporter.cpp

Modules/DiffusionImaging/DiffusionCore/Algorithms/itkShCoefficientImageExporter.h

Modules/DiffusionImaging/DiffusionCore/IODataStructures/TensorImages/mitkNrrdTensorImageReader.cpp

Modules/DiffusionImaging/DiffusionCore/Testing/CMakeLists.txt

Modules/DiffusionImaging/DiffusionCore/Testing/files.cmake

Modules/DiffusionImaging/DiffusionCore/Testing/mitkImageReconstructionTest.cpp

Modules/DiffusionImaging/DiffusionCore/files.cmake

Modules/DiffusionImaging/FiberTracking/Algorithms/itkAddArtifactsToDwiImageFilter.cpp

Modules/DiffusionImaging/FiberTracking/Algorithms/itkAddArtifactsToDwiImageFilter.h

Modules/DiffusionImaging/FiberTracking/Algorithms/itkEvaluateDirectionImagesFilter.cpp

Modules/DiffusionImaging/FiberTracking/Algorithms/itkFibersFromPlanarFiguresFilter.cpp

Modules/DiffusionImaging/FiberTracking/Algorithms/itkStreamlineTrackingFilter.cpp

Modules/DiffusionImaging/FiberTracking/Algorithms/itkStreamlineTrackingFilter.h

Modules/DiffusionImaging/FiberTracking/Algorithms/itkTractsToDWIImageFilter.cpp

Modules/DiffusionImaging/FiberTracking/Algorithms/itkTractsToDWIImageFilter.h

Modules/DiffusionImaging/FiberTracking/Algorithms/itkTractsToVectorImageFilter.cpp

Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundleX/mitkFiberBundleX.cpp

Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundleX/mitkFiberBundleX.h

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkAstroStickModel.cpp

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkAstroStickModel.h

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkBallModel.cpp

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkBallModel.h

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkChiSquareNoiseModel.cpp

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkChiSquareNoiseModel.h

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkChisquareNoiseModel.cpp

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkChisquareNoiseModel.h

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkDiffusionNoiseModel.h

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkDiffusionSignalModel.h

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkDotModel.cpp

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkDotModel.h

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkKspaceArtifact.h

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkRicianNoiseModel.h

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkStickModel.cpp

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkStickModel.h

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkTensorModel.cpp

Modules/DiffusionImaging/FiberTracking/SignalModels/mitkTensorModel.h

Modules/DiffusionImaging/FiberTracking/Testing/CMakeLists.txt

Modules/DiffusionImaging/FiberTracking/Testing/files.cmake

Modules/DiffusionImaging/FiberTracking/Testing/mitkFiberBundleXTest.cpp

Modules/DiffusionImaging/FiberTracking/Testing/mitkFiberExtractionTest.cpp

Modules/DiffusionImaging/FiberTracking/Testing/mitkFiberGenerationTest.cpp

Modules/DiffusionImaging/FiberTracking/Testing/mitkFiberTransformationTest.cpp

Modules/DiffusionImaging/FiberTracking/Testing/mitkLocalFiberPlausibilityTest.cpp

Modules/DiffusionImaging/FiberTracking/Testing/mitkPeakExtractionTest.cpp

Modules/DiffusionImaging/FiberTracking/Testing/mitkStreamlineTrackingTest.cpp

Modules/DiffusionImaging/FiberTracking/files.cmake

Modules/DiffusionImaging/MiniApps/CMakeLists.txt

Modules/DiffusionImaging/MiniApps/ExportShImage.cpp

Modules/DiffusionImaging/MiniApps/FiberFoxProcessing.cpp

Modules/DiffusionImaging/MiniApps/GibbsTracking.cpp

Modules/DiffusionImaging/MiniApps/LocalDirectionalFiberPlausibility.cpp

Modules/DiffusionImaging/MiniApps/MiniAppManager.cpp

Modules/DiffusionImaging/MiniApps/PeakExtraction.cpp

Modules/DiffusionImaging/MiniApps/QballReconstruction.cpp

Modules/DiffusionImaging/MiniApps/StreamlineTracking.cpp

Modules/DiffusionImaging/MiniApps/TensorReconstruction.cpp

Modules/DiffusionImaging/MiniApps/TractometerAngularErrorTool.cpp

Modules/DiffusionImaging/MiniApps/files.cmake

Plugins/org.mitk.gui.qt.diffusionimaging/documentation/UserManual/QmitkFiberfoxViewUserManual.dox

Plugins/org.mitk.gui.qt.diffusionimaging/resources/QmitkDiffusionImaging.qrc

Plugins/org.mitk.gui.qt.diffusionimaging/resources/general_icons/abort.ico

Plugins/org.mitk.gui.qt.diffusionimaging/resources/general_icons/copy1.ico

Plugins/org.mitk.gui.qt.diffusionimaging/resources/general_icons/copy2.ico

Merge branch 'bug-16680-MiniAppIntegrationBranch'
c100f2d2dd83
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Changes (104)
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