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Diffusion MITK e42874b1722a

Clean up Classification module and plugins
e42874b1722a
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Description

Clean up Classification module and plugins

Summary:

  • Remove classification plugins
  • Remove unused stubs and files
  • Remove abandoned command-line apps
  • Remove abandoned modules
  • Remove Vigra as third-party dependency
  • Remove broken build configurations and whitelists

Fixes T29649

Test Plan: As nothing was really altered but only removed, a successful CI build and test run should suffice.

Reviewers: floca, O1 MITK Reviewer Group I

Reviewed By: floca, O1 MITK Reviewer Group I

Maniphest Tasks: T29649

Differential Revision: https://phabricator.mitk.org/D856

Details

Provenance
kislinskAuthored on Jul 26 2023, 4:12 PM
kislinskPushed on Aug 1 2023, 11:44 AM
Reviewer
O1: MITK Reviewer Group I
Differential Revision
Restricted Differential Revision
Parents
rMITKfbcfd9071d9c: Remove dangling references from documentation
rMITKe7a6ceb95e8d: Update interpolation documentation & fix some typos
Branches
Unknown
Tags
Unknown
Tasks
T29649: Classification Module clean up

Merged Changes

Changes (271)
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PathSizePackages
CMake/
BuildConfigurations/
O1: MITK Reviewer Group I
O1: MITK Reviewer Group I
PackageDepends/
O1: MITK Reviewer Group I
Whitelists/
O1: MITK Reviewer Group I
O1: MITK Reviewer Group I
CMakeExternals/
O1: MITK Reviewer Group I
O1: MITK Reviewer Group I
O1: MITK Reviewer Group I
Documentation/
Doxygen/
2-UserManual/
3-DeveloperManual/
Starting/
SettingUpMITK/
Modules/
Classification/
CLCore/
CLMRUtilities/
CLMiniApps/
CLUtilities/
test/
Plugins/

rMITKe42874b1722a

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CMake/BuildConfigurations/ClassificationCmdApps.cmake

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CMake/BuildConfigurations/PhenotypingRelease.cmake

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CMake/PackageDepends/MITK_Vigra_Config.cmake

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CMake/Whitelists/ClassificationCmdApps.cmake

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CMake/mitkFunctionGetLibrarySearchPaths.cmake

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CMakeExternals/ExternalProjectList.cmake

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CMakeExternals/Vigra.cmake

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CMakeExternals/Vigra.patch

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Documentation/Doxygen/2-UserManual/MITKPluginManualsList.dox

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Documentation/Doxygen/2-UserManual/MiniApps.dox

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Documentation/Doxygen/3-DeveloperManual/Starting/SettingUpMITK/ThirdPartyLibs.dox

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Modules/Classification/CLCore/CMakeLists.txt

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Modules/Classification/CLCore/test

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Modules/Classification/CLCore/test/CMakeLists.txt

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Modules/Classification/CLCore/test/files.cmake

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Modules/Classification/CLImportanceWeighting

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Modules/Classification/CLImportanceWeighting/CMakeLists.txt

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Modules/Classification/CLImportanceWeighting/files.cmake

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Modules/Classification/CLImportanceWeighting/include

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Modules/Classification/CLImportanceWeighting/include/mitkDistModels.h

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Modules/Classification/CLImportanceWeighting/include/mitkGeneralizedLinearModel.h

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Modules/Classification/CLImportanceWeighting/include/mitkLRDensityEstimation.h

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Modules/Classification/CLImportanceWeighting/include/mitkLinkModels.h

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Modules/Classification/CLImportanceWeighting/src

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Modules/Classification/CLImportanceWeighting/src/mitkDistModels.cpp

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Modules/Classification/CLImportanceWeighting/src/mitkGeneralizedLinearModel.cpp

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Modules/Classification/CLImportanceWeighting/src/mitkLRDensityEstimation.cpp

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Modules/Classification/CLImportanceWeighting/src/mitkLinkModels.cpp

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Modules/Classification/CLImportanceWeighting/test

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Modules/Classification/CLImportanceWeighting/test/CMakeLists.txt

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Modules/Classification/CLImportanceWeighting/test/files.cmake

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Modules/Classification/CLLibSVM

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Modules/Classification/CLLibSVM/CMakeLists.txt

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Modules/Classification/CLLibSVM/files.cmake

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Modules/Classification/CLLibSVM/include

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Modules/Classification/CLLibSVM/include/mitkLibSVMClassifier.h

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Modules/Classification/CLLibSVM/include/svm.h

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Modules/Classification/CLLibSVM/licence

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Modules/Classification/CLLibSVM/licence/COPYRIGHT

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Modules/Classification/CLLibSVM/licence/FAQ.html

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Modules/Classification/CLLibSVM/src/mitkLibSVMClassifier.cpp

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Modules/Classification/CLLibSVM/src/svm-predict.c

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Modules/Classification/CLLibSVM/src/svm-scale.c

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Modules/Classification/CLLibSVM/src/svm-train.c

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Modules/Classification/CLLibSVM/src/svm.cpp

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Modules/Classification/CLLibSVM/test/mitkLibSVMClassifierTest.cpp

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Modules/Classification/CLMRUtilities/CMakeLists.txt

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Modules/Classification/CLMRUtilities/test/mitkGlobalFeaturesTest.cpp

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Modules/Classification/CLMRUtilities/test/mitkSmoothedClassProbabilitesTest.cpp

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Modules/Classification/CLMiniApps/CL2Dto3DImage.cpp

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Modules/Classification/CLMiniApps/CLBrainMask.cpp

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Modules/Classification/CLMiniApps/CLDicom2Nrrd.cpp

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Modules/Classification/CLMiniApps/CLImageCropper.cpp

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Modules/Classification/CLMiniApps/CLLungSegmentation.cpp

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Modules/Classification/CLMiniApps/CLMatchPointReg.cpp

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Modules/Classification/CLMiniApps/CLMultiForestPrediction.cpp

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Modules/Classification/CLMiniApps/CLNrrdToPoly.cpp

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Modules/Classification/CLMiniApps/CLOverlayRoiCenterOfMass.cpp

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Modules/Classification/CLMiniApps/CLPlanarFigureToNrrd.cpp

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Modules/Classification/CLMiniApps/CLPointSetToSegmentation.cpp

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Modules/Classification/CLMiniApps/CLPolyToNrrd.cpp

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Modules/Classification/CLMiniApps/CLPurfVoxelClassification.cpp

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Modules/Classification/CLMiniApps/CLRandomSampling.cpp

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Modules/Classification/CLMiniApps/CLRemoveEmptyVoxels.cpp

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Modules/Classification/CLMiniApps/CLResampleImageToReference.cpp

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Modules/Classification/CLMiniApps/CLSimpleVoxelClassification.cpp

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Modules/Classification/CLMiniApps/CLSkullMask.cpp

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Modules/Classification/CLMiniApps/CLStaple.cpp

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Modules/Classification/CLMiniApps/CLSurWeighting.cpp

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Modules/Classification/CLMiniApps/CLVoxelClassification.cpp

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Modules/Classification/CLMiniApps/CLVoxelFeatures.cpp

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Modules/Classification/CLMiniApps/CLWeighting.cpp

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Modules/Classification/CLMiniApps/ManualSegmentationEvaluation.cpp

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Modules/Classification/CLMiniApps/NativeHeadCTSegmentation.cpp

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Modules/Classification/CLMiniApps/RandomForestTraining.cpp

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Modules/Classification/CLMiniApps/XRaxSimulationFromCT.cpp

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Modules/Classification/CLUtilities/test/files.cmake

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Modules/Classification/CLUtilities/test/mitkGlobalFeaturesTest.cpp

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Modules/Classification/CLUtilities/test/mitkSmoothedClassProbabilitesTest.cpp

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Modules/Classification/CLVigraRandomForest

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Modules/Classification/CLVigraRandomForest/CMakeLists.txt

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Modules/Classification/CLVigraRandomForest/include/itkHessianMatrixEigenvalueImageFilter.h

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Modules/Classification/CLVigraRandomForest/include/itkStructureTensorEigenvalueImageFilter.h

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Modules/Classification/CLVigraRandomForest/include/mitkAdditionalRFData.h

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Modules/Classification/CLVigraRandomForest/include/mitkLinearSplitting.h

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Modules/Classification/CLVigraRandomForest/include/mitkPUImpurityLoss.h

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Modules/Classification/CLVigraRandomForest/include/mitkPURFClassifier.h

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Modules/Classification/CLVigraRandomForest/include/mitkRandomForestIO.h

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Modules/Classification/CLVigraRandomForest/include/mitkThresholdSplit.h

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Modules/Classification/CLVigraRandomForest/include/mitkVigraRandomForestClassifier.h

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Modules/Classification/CLVigraRandomForest/include/mitkVigraRandomForestClassifierSerializer.h

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Modules/Classification/CLVigraRandomForest/src

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Modules/Classification/CLVigraRandomForest/src/Algorithm

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Modules/Classification/CLVigraRandomForest/src/Algorithm/itkHessianMatrixEigenvalueImageFilter.cpp

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Modules/Classification/CLVigraRandomForest/src/Algorithm/itkStructureTensorEigenvalueImageFilter.cpp

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Modules/Classification/CLVigraRandomForest/src/Classifier

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Modules/Classification/CLVigraRandomForest/src/Classifier/mitkPURFClassifier.cpp

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Modules/Classification/CLVigraRandomForest/src/Classifier/mitkVigraRandomForestClassifier.cpp

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Modules/Classification/CLVigraRandomForest/src/IO

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Modules/Classification/CLVigraRandomForest/src/IO/mitkDummyLsetReader.cpp

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Modules/Classification/CLVigraRandomForest/src/IO/mitkRandomForestIO.cpp

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Modules/Classification/CLVigraRandomForest/src/IO/mitkVigraRandomForestClassifierSerializer.cpp

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Modules/Classification/CLVigraRandomForest/src/Splitter

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Modules/Classification/CLVigraRandomForest/src/Splitter/mitkAdditionalRFData.cpp

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Modules/Classification/CLVigraRandomForest/src/Splitter/mitkImpurityLoss.cpp

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Modules/Classification/CLVigraRandomForest/src/Splitter/mitkLinearSplitting.cpp

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Modules/Classification/CLVigraRandomForest/src/Splitter/mitkPUImpurityLoss.cpp

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Modules/Classification/CLVigraRandomForest/src/Splitter/mitkThresholdSplit.cpp

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Modules/Classification/CLVigraRandomForest/src/mitkModuleActivator.cpp

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Modules/Classification/CLVigraRandomForest/test

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Modules/Classification/CLVigraRandomForest/test/CMakeLists.txt

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Modules/Classification/CLVigraRandomForest/test/files.cmake

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Modules/Classification/CLVigraRandomForest/test/mitkVigraRandomForestTest.cpp

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Modules/Classification/CMakeLists.txt

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Modules/Classification/DataCollection

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Modules/Classification/DataCollection/CMakeLists.txt

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Modules/Classification/DataCollection/DataHolder

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Modules/Classification/DataCollection/DataHolder/mitkDataCollection.cpp

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Modules/Classification/DataCollection/DataHolder/mitkDataCollection.h

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Modules/Classification/DataCollection/DataHolder/mitkDataCollectionUtility.cpp

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Modules/Classification/DataCollection/DataHolder/mitkDataCollectionUtility.h

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Modules/Classification/DataCollection/Iterators

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Modules/Classification/DataCollection/Iterators/mitkDataCollectionImageIterator.cxx

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Modules/Classification/DataCollection/Iterators/mitkDataCollectionImageIterator.h

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Modules/Classification/DataCollection/Iterators/mitkDataCollectionSingleImageIterator.cxx

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Modules/Classification/DataCollection/Iterators/mitkDataCollectionSingleImageIterator.h

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Modules/Classification/DataCollection/Iterators/mitkDataCollectionVectorImageIterator.cxx

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Modules/Classification/DataCollection/Iterators/mitkDataCollectionVectorImageIterator.h

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Modules/Classification/DataCollection/ReaderWriter

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Modules/Classification/DataCollection/ReaderWriter/mitkCollectionReader.cpp

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Modules/Classification/DataCollection/ReaderWriter/mitkCollectionReader.h

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Modules/Classification/DataCollection/ReaderWriter/mitkCollectionWriter.cpp

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Modules/Classification/DataCollection/ReaderWriter/mitkCollectionWriter.h

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Modules/Classification/DataCollection/Testing

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Modules/Classification/DataCollection/Testing/mitKnnClassificationTest.cpp

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Modules/Classification/DataCollection/Testing/mitkDataCollectionBySuffix.cpp

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Modules/Classification/DataCollection/Testing/mitkDataCollectionFromXMLTest.cpp

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Modules/Classification/DataCollection/Testing/mitkDataCollectionImageIteratorTest.cpp

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Modules/Classification/DataCollection/Testing/mitkDataCollectionReaderWriterTest.cpp

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Modules/Classification/DataCollection/Testing/mitkDataCollectionTest.cpp

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Modules/Classification/DataCollection/Testing/mitkGenerateFeatureVectFromImageTest.cpp

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Modules/Classification/DataCollection/Testing/mitkSherwoodTest.cpp

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Modules/Classification/DataCollection/Utilities/mitkCollectionStatistic.h

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Modules/Classification/DataCollection/Utilities/mitkCostingStatistic.cpp

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Modules/Classification/DataCollection/Utilities/mitkCostingStatistic.h

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Modules/Classification/DataCollection/Utilities/mitkDataCollectionUtilities.cpp

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Modules/Classification/DataCollection/Utilities/mitkDataCollectionUtilities.h

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Modules/Classification/DataCollection/files.cmake

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Modules/Classification/DataCollection/testcase.cpp

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Modules/Classification/DataCollection/testcase.h

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Modules/Classification/Scripts

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Modules/Classification/Scripts/xvfb-run-save.sh

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Plugins/org.mitk.gui.qt.classificationsegmentation

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Plugins/org.mitk.gui.qt.radiomics/src/internal/mitkBasicImageProcessingActivator.cpp

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Plugins/org.mitk.gui.qt.radiomics/src/internal/mitkBasicImageProcessingActivator.h

MITK · MIC · IMSY · DKFZ