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kislinsk (Stefan Dinkelacker)
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User Since
Aug 1 2016, 11:50 AM (373 w, 3 d)
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Recent Activity

Today

kislinsk added a revision to T30213: Poco fails to build if the library names of OpenSSL are not libcrypto.lib and libssl.lib: Unknown Object (Differential Revision).
Thu, Sep 28, 11:57 AM · MITK (v2023.10)
kislinsk updated the task description for T30213: Poco fails to build if the library names of OpenSSL are not libcrypto.lib and libssl.lib.
Thu, Sep 28, 11:01 AM · MITK (v2023.10)
kislinsk triaged T30213: Poco fails to build if the library names of OpenSSL are not libcrypto.lib and libssl.lib as High priority.
Thu, Sep 28, 11:00 AM · MITK (v2023.10)

Aug 17 2023

kislinsk added a comment to T30186: PixelDumper view in MITK release.

As far as I understand the plugin's purpose it is basically an export of an image as CSV file? And the request is to add it to MITK instead of eMITK? Is there some additional functionality involved or could we just add it as another MIME type for images instead of a dedicated plugin?

Aug 17 2023, 9:16 PM · MITK

Aug 16 2023

kislinsk closed T30176: [Segmentation Task List] Improve task selection for long task lists as Resolved.
Aug 16 2023, 1:17 PM · MITK
kislinsk closed T30177: Add command-line app for converting contours like RTSTRUCT to masks as Resolved.
Aug 16 2023, 1:17 PM · MITK
kislinsk added a comment to T30177: Add command-line app for converting contours like RTSTRUCT to masks.

Deleted branch from rMITK MITK: feature/T30177-ContourModelSetToSegmentationApp.

Aug 16 2023, 1:17 PM · MITK
kislinsk committed rMITK3bc0b8d26171: Add ContourModelSetToImage command-line app (authored by kislinsk).
Add ContourModelSetToImage command-line app
Aug 16 2023, 1:17 PM
kislinsk committed rMITKb4402515969c: Add options for label pixel type and painting pixel value (authored by kislinsk).
Add options for label pixel type and painting pixel value
Aug 16 2023, 1:17 PM
kislinsk committed rMITK2811bc9d2476: Improve ContoursToImage command-line app (authored by kislinsk).
Improve ContoursToImage command-line app
Aug 16 2023, 1:17 PM
kislinsk committed rMITKa68787e50b06: Improve function names (authored by kislinsk).
Improve function names
Aug 16 2023, 1:17 PM
kislinsk committed rMITK574e1c240c78: Reduce unnecessary image copies (authored by kislinsk).
Reduce unnecessary image copies
Aug 16 2023, 1:17 PM
kislinsk committed rMITK9809a154d92d: Handle unknown output format (authored by kislinsk).
Handle unknown output format
Aug 16 2023, 1:17 PM
kislinsk committed rMITK0b48e640e3b3: Add segmentation app(s) to WorkbenchRelease config (authored by kislinsk).
Add segmentation app(s) to WorkbenchRelease config
Aug 16 2023, 1:17 PM
kislinsk committed rMITKeb2946f86234: Merge branch 'feature/T30177-ContourModelSetToSegmentationApp' into develop (authored by kislinsk).
Merge branch 'feature/T30177-ContourModelSetToSegmentationApp' into develop
Aug 16 2023, 1:16 PM
kislinsk added a comment to T30176: [Segmentation Task List] Improve task selection for long task lists.

Deleted branch from rMITK MITK: feature/T30176-FindTask.

Aug 16 2023, 9:30 AM · MITK
kislinsk committed rMITKb2bce4897cbd: Remove include duplicate (authored by kislinsk).
Remove include duplicate
Aug 16 2023, 9:30 AM
kislinsk committed rMITK77bcb83705ed: Add icon for find actions (authored by kislinsk).
Add icon for find actions
Aug 16 2023, 9:30 AM
kislinsk committed rMITK3b7e78f56fac: Add basic dialog for finding segmentation tasks (authored by kislinsk).
Add basic dialog for finding segmentation tasks
Aug 16 2023, 9:30 AM
kislinsk committed rMITK7ff18b4ad1b8: Add tool button for finding tasks (authored by kislinsk).
Add tool button for finding tasks
Aug 16 2023, 9:30 AM
kislinsk committed rMITK5fdaf96e55bf: Set tabstop order and label buddies (authored by kislinsk).
Set tabstop order and label buddies
Aug 16 2023, 9:30 AM
kislinsk committed rMITK0a64cf1b3e8e: Only load found task if it is not the active task already (authored by kislinsk).
Only load found task if it is not the active task already
Aug 16 2023, 9:30 AM
kislinsk committed rMITK217d4ea27ca6: Use enum for column identification (authored by kislinsk).
Use enum for column identification
Aug 16 2023, 9:30 AM
kislinsk committed rMITK5f2c58dd0f89: Hide dialog's "What's this?" button (authored by kislinsk).
Hide dialog's "What's this?" button
Aug 16 2023, 9:30 AM
kislinsk committed rMITKfed87c6fbbd4: Add task filtering (authored by kislinsk).
Add task filtering
Aug 16 2023, 9:30 AM
kislinsk committed rMITK32754559ec5b: Persist dialog geometry and column widths (authored by kislinsk).
Persist dialog geometry and column widths
Aug 16 2023, 9:30 AM
kislinsk committed rMITK559da5ef6110: Fix comparisons of integers of different signs (authored by kislinsk).
Fix comparisons of integers of different signs
Aug 16 2023, 9:30 AM
kislinsk committed rMITK20c6e43b1e5b: Extend user guide (authored by kislinsk).
Extend user guide
Aug 16 2023, 9:30 AM
kislinsk committed rMITKc98ae6b71841: Merge branch 'feature/T30176-FindTask' into develop (authored by kislinsk).
Merge branch 'feature/T30176-FindTask' into develop
Aug 16 2023, 9:30 AM

Aug 6 2023

kislinsk added a revision to T30176: [Segmentation Task List] Improve task selection for long task lists: Unknown Object (Differential Revision).
Aug 6 2023, 11:41 AM · MITK

Aug 3 2023

kislinsk added a revision to T30177: Add command-line app for converting contours like RTSTRUCT to masks: Unknown Object (Differential Revision).
Aug 3 2023, 10:26 PM · MITK
kislinsk added a comment to T30177: Add command-line app for converting contours like RTSTRUCT to masks.
Example 1
MitkContoursToImage.bat --reference image.dcm --input rtstruct_contours.dcm --output output.nrrd
Aug 3 2023, 3:54 PM · MITK
kislinsk added a comment to T30177: Add command-line app for converting contours like RTSTRUCT to masks.

The app is now called MitkContoursToImage. By default it outputs classic binary images for each contour set in the input. Use the --format/-f flag (defaults to binary) to change the output format to label or multilabel. The former outputs single-label segmentations for each contour set in the input and the latter outputs a single multi-label segmentation with labels for each contour set. Note that each label will be in its own layer/group to allow for overlapping labels.

Aug 3 2023, 3:48 PM · MITK
kislinsk added a comment to T30177: Add command-line app for converting contours like RTSTRUCT to masks.

Pushed new branch to rMITK MITK: feature/T30177-ContourModelSetToSegmentationApp.

Aug 3 2023, 2:20 PM · MITK

Aug 2 2023

kislinsk moved T30180: [Statistics] Median is approximated and completely off if sample size is small from Backlog to MITK Meeting on the Request for Discussion board.
Aug 2 2023, 4:33 PM · MITK (v2023.10), Request for Discussion
kislinsk triaged T30180: [Statistics] Median is approximated and completely off if sample size is small as Unbreak Now! priority.
Aug 2 2023, 4:33 PM · MITK (v2023.10), Request for Discussion
kislinsk triaged T30177: Add command-line app for converting contours like RTSTRUCT to masks as Wishlist priority.
Aug 2 2023, 11:48 AM · MITK
kislinsk renamed T30169: Hot keys for iterating through slices (while segmenting) from Hot keys for iterating throw slices (while segmenting) to Hot keys for iterating through slices (while segmenting).
Aug 2 2023, 11:44 AM · Request for Discussion, MITK
kislinsk added a comment to T30148: MITK FlowBench v2023.04 - crashes on "Accept segmentation".

Multiple reasons depending on the reference data. Mainly related to non-conforming images or at least images that are recognized as such by us or our third-party deps. Other reasons include 4-d images as you already mentioned. We talked about it a few days ago and this part of MITK and our third-party deps needs a little bit of love and affection as it seems.

Aug 2 2023, 9:35 AM · MITK (v2023.10)

Aug 1 2023

kislinsk added a comment to T30176: [Segmentation Task List] Improve task selection for long task lists.

Pushed new branch to rMITK MITK: feature/T30176-FindTask.

Aug 1 2023, 4:50 PM · MITK
kislinsk added a comment to T29650: mitk-flow " Please reinitialize the selected segmentation image!" problem.

I just did the Pic3D/brain test mentioned above and it works with v2023.04.

Aug 1 2023, 3:36 PM · Next Milestone, Request for Discussion, MITK
kislinsk closed T30148: MITK FlowBench v2023.04 - crashes on "Accept segmentation" as Wontfix.

@gaoh Since we released MITK v2023.04.2 yesterday specifically addressing a DICOM-SEG issue I kind of got an overview of the overall situation in MITK regarding saving DICOM-SEGs.

Aug 1 2023, 3:29 PM · MITK (v2023.10)
kislinsk triaged T30176: [Segmentation Task List] Improve task selection for long task lists as High priority.
Aug 1 2023, 3:15 PM · MITK
kislinsk triaged T29650: mitk-flow " Please reinitialize the selected segmentation image!" problem as Normal priority.
Aug 1 2023, 3:11 PM · Next Milestone, Request for Discussion, MITK
kislinsk added a comment to T29650: mitk-flow " Please reinitialize the selected segmentation image!" problem.

We could set up a test case to check if it is still an issue in the context of segmentation task lists. A segmentation task list with two tasks, one task referencing Pic3D.nrrd, the other task referencing the tilted brain.nrrd image. If this is working with the latest release it should be a proof that is not an issue anymore.

Aug 1 2023, 3:11 PM · Next Milestone, Request for Discussion, MITK
kislinsk closed T30167: Volumetric feature calculation limited to voxels with label == 1 in MITK Radiomics as Wontfix.

Thanks for the report. We recently removed this functionality from MITK so I would like to close this task as Wontfix if you are fine with the workaround you mentioned?

Aug 1 2023, 3:04 PM · MITK
kislinsk triaged T30169: Hot keys for iterating through slices (while segmenting) as Wishlist priority.
Aug 1 2023, 3:02 PM · Request for Discussion, MITK
kislinsk added a comment to T29649: Classification Module clean up.

Deleted branch from rMITK MITK: bugfix/T29649-ClassificationModuleCleanUp.

Aug 1 2023, 11:49 AM · MITK (v2023.10), Request for Discussion
kislinsk committed rMITKe77010059eea: Remove unused stubs and files (authored by kislinsk).
Remove unused stubs and files
Aug 1 2023, 11:44 AM
kislinsk committed rMITKfd7b28e57261: Remove classification plugins (authored by kislinsk).
Remove classification plugins
Aug 1 2023, 11:44 AM
kislinsk committed rMITKf91d514bd007: Remove abandoned command-line apps (authored by kislinsk).
Remove abandoned command-line apps
Aug 1 2023, 11:44 AM
kislinsk committed rMITK9ed9e1dd2da0: Remove abandoned modules (authored by kislinsk).
Remove abandoned modules
Aug 1 2023, 11:44 AM
kislinsk committed rMITK897ce8f134c5: Remove Vigra as third-party dependency (authored by kislinsk).
Remove Vigra as third-party dependency
Aug 1 2023, 11:44 AM
kislinsk committed rMITK9211eb4366e7: Remove broken build configurations and whitelists (authored by kislinsk).
Remove broken build configurations and whitelists
Aug 1 2023, 11:44 AM
kislinsk committed rMITKfbcfd9071d9c: Remove dangling references from documentation (authored by kislinsk).
Remove dangling references from documentation
Aug 1 2023, 11:44 AM
kislinsk committed rMITKe42874b1722a: Clean up Classification module and plugins (authored by kislinsk).
Clean up Classification module and plugins
Aug 1 2023, 11:44 AM
kislinsk closed T29649: Classification Module clean up as Resolved by committing rMITKe42874b1722a: Clean up Classification module and plugins.
Aug 1 2023, 11:44 AM · MITK (v2023.10), Request for Discussion

Jul 31 2023

kislinsk updated subscribers of T29640: Verboseness in MatchPoint Algorithm Control.
Jul 31 2023, 2:41 PM · Missing Info, MITK (v2023.10)
kislinsk added a comment to T30163: MITK v2023.04.2.

The tag v2023.04.2 was created on the branch hotfix/T30163-v2023.04.2, which should not be deleted.

Jul 31 2023, 12:28 PM · MITK
kislinsk closed T30163: MITK v2023.04.2 as Resolved.
Jul 31 2023, 12:26 PM · MITK
kislinsk edited the content of Changelog.
Jul 31 2023, 12:16 PM · MITK
kislinsk edited the content of MITK v2023.04.2.
Jul 31 2023, 12:14 PM
kislinsk edited the content of MITK v2023.04.
Jul 31 2023, 11:14 AM
kislinsk deleted MITK v2023.04.2.
Jul 31 2023, 10:26 AM
kislinsk created an object: MITK v2023.04.2.
Jul 31 2023, 10:24 AM

Jul 26 2023

kislinsk added a revision to T29649: Classification Module clean up: Unknown Object (Differential Revision).
Jul 26 2023, 3:42 PM · MITK (v2023.10), Request for Discussion
kislinsk added a comment to T29649: Classification Module clean up.

Pushed new branch to rMITK MITK: bugfix/T29649-ClassificationModuleCleanUp.

Jul 26 2023, 3:38 PM · MITK (v2023.10), Request for Discussion
kislinsk claimed T29649: Classification Module clean up.
Jul 26 2023, 1:29 PM · MITK (v2023.10), Request for Discussion

Jul 18 2023

kislinsk added a comment to T30156: Level Window contrast effect in SAM tool.

You seem to mix a few things here.

Jul 18 2023, 4:05 PM · MITK (v2023.10)

Jul 17 2023

kislinsk added a comment to T30163: MITK v2023.04.2.

Pushed new branch to rMITK MITK: hotfix/T30163-v2023.04.2.

Jul 17 2023, 10:44 AM · MITK
kislinsk triaged T30163: MITK v2023.04.2 as Normal priority.
Jul 17 2023, 10:40 AM · MITK
kislinsk created an object: MITK v2023.04.2.
Jul 17 2023, 10:38 AM

Jul 13 2023

kislinsk removed a project from T30148: MITK FlowBench v2023.04 - crashes on "Accept segmentation": Request for Discussion.

I can reproduce the crash.

Jul 13 2023, 9:18 AM · MITK (v2023.10)
kislinsk triaged T29616: [DICOM] Add option to save images as DICOM as Wishlist priority.

It is technically possible but it would require about a person month to complete, so we decided for now we do not want start implementation as it is as important as other tasks that we have to accomplish.

Jul 13 2023, 9:14 AM · MITK (v2023.10)
kislinsk moved T30160: Move MITK to our GitLab instance from Backlog to Cycle on the MITK (v2023.10) board.
Jul 13 2023, 8:51 AM · MITK (v2023.10)
kislinsk triaged T30160: Move MITK to our GitLab instance as Normal priority.
Jul 13 2023, 8:51 AM · MITK (v2023.10)
kislinsk moved T29406: Make MITK compatible with Qt 6 from Backlog to Cycle on the MITK (v2023.10) board.
Jul 13 2023, 8:48 AM · MITK (v2023.10)
kislinsk edited projects for T29406: Make MITK compatible with Qt 6, added: MITK (v2023.10); removed MITK.
Jul 13 2023, 8:47 AM · MITK (v2023.10)
kislinsk moved T30155: Bounding boxes / ROIs in MITK from Backlog to Cycle on the MITK (v2023.10) board.
Jul 13 2023, 8:47 AM · MITK (v2023.10)
kislinsk triaged T30148: MITK FlowBench v2023.04 - crashes on "Accept segmentation" as High priority.
Jul 13 2023, 8:47 AM · MITK (v2023.10)
kislinsk moved T30148: MITK FlowBench v2023.04 - crashes on "Accept segmentation" from Backlog to MITK Meeting on the Request for Discussion board.
Jul 13 2023, 8:46 AM · MITK (v2023.10)
kislinsk moved T30148: MITK FlowBench v2023.04 - crashes on "Accept segmentation" from Backlog to Cycle on the MITK (v2023.10) board.
Jul 13 2023, 8:46 AM · MITK (v2023.10)
kislinsk edited projects for T30148: MITK FlowBench v2023.04 - crashes on "Accept segmentation", added: Request for Discussion, MITK (v2023.10); removed MITK.
Jul 13 2023, 8:46 AM · MITK (v2023.10)

Jul 12 2023

kislinsk closed T30159: Disable ITK path length checks as Resolved.
Jul 12 2023, 3:39 PM · MITK
kislinsk added a comment to T30159: Disable ITK path length checks.

Deleted branch from rMITK MITK: bugfix/T30159-DisableITKPathLengthCheckOnWindows.

Jul 12 2023, 3:39 PM · MITK
kislinsk committed rMITK8031eb847f66: Skip ITK's path length check on Windows (authored by kislinsk).
Skip ITK's path length check on Windows
Jul 12 2023, 3:39 PM
kislinsk committed rMITK93cad3033b15: Merge branch 'bugfix/T30159-DisableITKPathLengthCheckOnWindows' into develop (authored by kislinsk).
Merge branch 'bugfix/T30159-DisableITKPathLengthCheckOnWindows' into develop
Jul 12 2023, 3:39 PM
kislinsk added a comment to T30159: Disable ITK path length checks.

Pushed new branch to rMITK MITK: bugfix/T30159-DisableITKPathLengthCheckOnWindows.

Jul 12 2023, 3:38 PM · MITK
kislinsk triaged T30159: Disable ITK path length checks as High priority.
Jul 12 2023, 3:35 PM · MITK
kislinsk changed the status of T29622: How to Download Instagram Videos Easily and Quickly Using instafinstaHD from Invalid to Spite.
Jul 12 2023, 2:56 PM
kislinsk claimed T30148: MITK FlowBench v2023.04 - crashes on "Accept segmentation".

@floca Is this something we are already aware of (saving as .dcm crashes)?

Jul 12 2023, 2:51 PM · MITK (v2023.10)

Jul 10 2023

kislinsk updated the task description for T30155: Bounding boxes / ROIs in MITK.
Jul 10 2023, 1:04 PM · MITK (v2023.10)
kislinsk added a comment to T30155: Bounding boxes / ROIs in MITK.
  1. Done
  2. If the geometry is to be defined right in the file itself, I vote against a ReferenceGeometry type of "Geometry" but rather actually a "Geometry" JSON object. So it is either having a reference to something else that defines the geometry or specifying the geometry right in the file without any redirections.
  3. Done, also added "Type" to "Frames", which is "Box" for, well... boxes.
Jul 10 2023, 10:48 AM · MITK (v2023.10)
kislinsk updated the task description for T30155: Bounding boxes / ROIs in MITK.
Jul 10 2023, 10:43 AM · MITK (v2023.10)

Jul 8 2023

kislinsk awarded T30152: Create an MITK extension for IGT&co and move code a Love token.
Jul 8 2023, 8:35 AM · MITK (v2023.10)
kislinsk awarded T29649: Classification Module clean up a Love token.
Jul 8 2023, 8:35 AM · MITK (v2023.10), Request for Discussion
kislinsk added a comment to T30155: Bounding boxes / ROIs in MITK.

Thanks for the feedback. 🙏

Jul 8 2023, 8:33 AM · MITK (v2023.10)
kislinsk updated the task description for T30155: Bounding boxes / ROIs in MITK.
Jul 8 2023, 8:21 AM · MITK (v2023.10)

Jul 7 2023

kislinsk triaged T30155: Bounding boxes / ROIs in MITK as High priority.
Jul 7 2023, 12:48 PM · MITK (v2023.10)

Jun 30 2023

kislinsk added a comment to T30146: SAMtool: Problem while downloading pretrained models.

Qt 5.15 is built against OpenSSL 1.1.1, however, Ubuntu 22.04 provides only the incompatible OpenSSL 3, which is why the calls cannot be resolved. The Qt 5 apt packages (resp. system Qt 5) is probably patched to work with OpenSSL 3, though, which is why it works on build machines that use system Qt 5 instead of the Qt5 online installer. System libs are not packed into installers, though, so it only works in the build tree and installers will be broken on other systems.

Jun 30 2023, 12:50 PM · MITK (v2023.10)