Merge remote-tracking branch 'origin/bug-16744-integration-master' into bug…
f5cf04bfe717
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Description

Merge remote-tracking branch 'origin/bug-16744-integration-master' into bug-16813-dcm-refactor-diffusion-master

Details

Provenance

Authored on Jan 29 2014, 12:54 PM

Parents

rMITKa643625406a2: Merge branch 'bug-16780-RemoveWarningsInDiffusionImaging'
rMITKcb1efb86579c: Merge branch 'bug-16744-develop' into bug-16744-integration-master

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Event Timeline

• hering committed rMITKf5cf04bfe717: Merge remote-tracking branch 'origin/bug-16744-integration-master' into bug… (authored by • hering).Jan 29 2014, 12:54 PM

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

cb1efb86579c Merge branch 'bug-16744-develop' into bug-16744-integration-master
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maleike
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e81135cb5809 Fix issues with threaded loading (remove statics)
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maleike
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20d184f8bd17 Fix reference to temporary
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36e816901c8e Merge branch 'bug-16744-develop' into bug-16744-integration-master
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maleike
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f9424cc12220 Fix build system to MITK master
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maleike
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8a0a227108b5 Relax test code as in MITK master
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f7d9787b221c Adapt CMake code to recent master build system changes
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699469f0fe43 Add include guards
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maleike
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5ff709d50ebe Adapting microservices calls to v2
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maleike
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855e4a5c6c31 Resolve forgotten merge conflict
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maleike
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9f4cef68d6a1 Merge remote-tracking branch 'origin/master' into bug-16744-integration-master
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maleike
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0822f83ae687 Fix copy c'tors and operator= (Markus' review)
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maleike
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5f3bf580a2a1 Clean origin of required tags, check on assumed "tilt bug"
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maleike
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f72f48508eba Nicer timing output
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maleike
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e6795f5a13d9 Make DICOMGDCMTagScanner::GetTagValue() more robust, document class and…
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maleike
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630443933cc0 Update obsolete TODOs and includes
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maleike
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19be44e3f851 Prepare external tags scanning
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maleike
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42cff34552de Move some code into GetTagsOfInterst for later reuse
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maleike
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94908d80ca1e Move actual tag scanning out of DICOMITKSeriesGDCMReader
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maleike
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067126a2ffc7 Make tilt and 3D+t properties of ClassicReader configurable
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maleike
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7e0ad7f8696b Make sure that level/windows for CR images (values around 16000) work
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maleike
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95f030017358 Implement two more options: "strict sorting" and "accept two slices in group"
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maleike
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5742e00c3624 Require version attribute in config files
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maleike
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0250699ec319 Fix DICOMTagBasedSorter::operator==()
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maleike
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b0326b6d09b8 Add serialization capability to DICOMReaderConfigurator
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maleike
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645531e776c3 Fix code
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maleike
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9fc54d3da7a8 Make sure an empty NumberOfFrames tag does not keep us from reading a file
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maleike
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b4587a273d73 Add method to add whole readers to the selection process
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maleike
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fb3779e0c265 Export classes used by other modules (or test drivers)
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maleike
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985d6ee7b864 Restore old DICOMTesting module and tests as DCMTesting module
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maleike
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8c6ba2c66115 Minimum optimization
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maleike
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25735ea09733 Make precision of image orientation configurable; make CutDecimalPlaces generic
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maleike
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3dd416e508c0 Provide properties to pre-loaded mitk::Images. Lets the…
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maleike
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0fba7d203a3f Let reader check for DICOMness of inputs, reject processing otherwise
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maleike
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7e6a28ed4032 Add option for tolerated origin error in EquiDistantBlocksSorter
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maleike
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ba90ed4ba77b Fix gantry tilt loading, which was broken by prior commits
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maleike
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3b3f76e793ef Don't always split by acquisition number
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maleike
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c99e8326c1c2 Document potential bug
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maleike
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e54e8ed11d8a Load 3D if we have only one timestep
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maleike
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c652b3735190 Provide method to load mitk::Image from a block descriptor only
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maleike
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f91b398dc519 Provide photometric interpretation and level/window from DICOM images
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maleike
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9938e7a5dadb Fix implementation of DICOMTag::operator<
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9c5e6d65a6de Return actual readers from selector class
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b2ab2b8948b9 Lazy generation of properties for imageblockdescriptors
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691980ce2990 Use Acquisition Time instead of ContentTime
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ffc8088351cb Check if the complete string was converted to a number
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60e654a187d9 Trim whitespace after tag values
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9b2f8befc9b5 More information into log file
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44ea34449c3c Make compile on Windows
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e093d9dfe794 Compile on Windows and fix error
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Changes (139)

Path

Size

Packages

Core/

Code/

DataManagement/

mitkLevelWindow.cpp

IO/

mitkDicomSeriesReader.cpp

Rendering/

mitkImageVtkMapper2D.cpp

Testing/

	DCMTesting/
	DICOMTesting/

	DumpDCMMitkImage.cpp
	DumpDICOMMitkImage.cpp

Testing/

CMakeLists.txt

files.cmake

	mitkDCMPreloadedVolumeTest.cpp
	mitkDICOMPreloadedVolumeTest.cpp

	mitkDCMTestingSanityTest.cpp
	mitkDICOMTestingSanityTest.cpp

	VerifyDCMMitkImageDump.cpp
	VerifyDICOMMitkImageDump.cpp

	mitkTestDCMLoading.cpp
	mitkTestDICOMLoading.cpp

	mitkTestDCMLoading.h
	mitkTestDICOMLoading.h

DICOMTesting

CMakeLists.txt

DumpDICOMMitkImage.cpp

Testing

CMakeLists.txt

files.cmake

mitkDICOMPreloadedVolumeTest.cpp

mitkDICOMTestingSanityTest.cpp

VerifyDICOMMitkImageDump.cpp

files.cmake

mitkTestDICOMLoading.cpp

mitkTestDICOMLoading.h

files.cmake

mitkDicomSeriesReaderTest.cpp

mitkLevelWindowTest.cpp

TestingHelper/

mitkTestingMacros.h

Documentation/

Doxygen/

Concepts/

DICOMTesting.dox

images/

tilt-correction.jpg

Examples/

CMakeLists.txt

Plugins/

org.mitk.example.gui.opencv/

Modules/

implementeditkseriesgdcmreader.jpg

imageposition_byacquisition.xml

mitkDICOMFileReaderTest.cpp

mitkDICOMFileReaderTestHelper.h

mitkDICOMFilenameSorter.cpp

mitkDICOMFilenameSorter.h

mitkDICOMITKSeriesGDCMReaderBasicsTest.cpp

mitkDICOMNullFileReader.cpp

mitkDICOMNullFileReader.h

mitkDICOMReaderConfiguratorTest.cpp

files.cmake

mitkClassicDICOMSeriesReader.cpp

mitkClassicDICOMSeriesReader.h

mitkDICOMDatasetAccess.h

mitkDICOMDatasetSorter.cpp

mitkDICOMDatasetSorter.h

mitkDICOMEnums.cpp

mitkDICOMEnums.h

mitkDICOMFileReader.cpp

mitkDICOMFileReader.h

mitkDICOMFileReaderSelector.cpp

mitkDICOMFileReaderSelector.h

mitkDICOMGDCMImageFrameInfo.cpp

mitkDICOMGDCMImageFrameInfo.h

mitkDICOMGDCMTagScanner.cpp

mitkDICOMGDCMTagScanner.h

mitkDICOMITKSeriesGDCMReader.cpp

mitkDICOMITKSeriesGDCMReader.h

mitkDICOMImageBlockDescriptor.cpp

mitkDICOMImageBlockDescriptor.h

mitkDICOMImageFrameInfo.cpp

mitkDICOMImageFrameInfo.h

mitkDICOMReaderConfigurator.cpp

mitkDICOMReaderConfigurator.h

mitkDICOMSortByTag.cpp

mitkDICOMSortByTag.h

mitkDICOMSortCriterion.cpp

mitkDICOMSortCriterion.h

mitkDICOMTag.cpp

mitkDICOMTag.h

mitkDICOMTagBasedSorter.cpp

mitkDICOMTagBasedSorter.h

mitkDICOMTagCache.cpp

mitkDICOMTagCache.h

mitkEquiDistantBlocksSorter.cpp

mitkEquiDistantBlocksSorter.h

mitkGantryTiltInformation.cpp

mitkGantryTiltInformation.h

mitkITKDICOMSeriesReaderHelper.cpp

mitkITKDICOMSeriesReaderHelper.h

mitkITKDICOMSeriesReaderHelper.txx

mitkNormalDirectionConsistencySorter.cpp

mitkNormalDirectionConsistencySorter.h

mitkSortByImagePositionPatient.cpp

mitkSortByImagePositionPatient.h

mitkThreeDnTDICOMSeriesReader.cpp

mitkThreeDnTDICOMSeriesReader.h

DICOMTesting

O3: MITK Reviewer Group II

CMakeLists.txt

O3: MITK Reviewer Group II

Testing

O3: MITK Reviewer Group II

mitkDICOMLocaleTest.cpp

O3: MITK Reviewer Group II

ImageStatistics/

Testing/

CMakeLists.txt

O1: MITK Reviewer Group I

mitkImageStatisticsCalculatorTest.cpp

O1: MITK Reviewer Group I

	Modules/	DICOMReader/	Documentation/
		Core/	Documentation/

	Doxygen/
	images/

tilt-correction.jpg

images/

tilt-correction.jpg

	Modules/			DICOMTesting/
	Core/	Code/	Testing/	DICOMTesting/

DumpDICOMMitkImage.cpp

O3: MITK Reviewer Group II

Testing/

CMakeLists.txt

O3: MITK Reviewer Group II

files.cmake

O3: MITK Reviewer Group II

mitkDICOMPreloadedVolumeTest.cpp

O3: MITK Reviewer Group II

mitkDICOMTestingSanityTest.cpp

O3: MITK Reviewer Group II

VerifyDICOMMitkImageDump.cpp

O3: MITK Reviewer Group II

files.cmake

O3: MITK Reviewer Group II

mitkTestDICOMLoading.cpp

O3: MITK Reviewer Group II

mitkTestDICOMLoading.h

O3: MITK Reviewer Group II

rMITKf5cf04bfe717

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Core/Code/DataManagement/mitkLevelWindow.cpp

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Core/Code/IO/mitkDicomSeriesReader.cpp

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Core/Code/Rendering/mitkImageVtkMapper2D.cpp

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Core/Code/Testing/CMakeLists.txt

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Core/Code/Testing/DCMTesting/CMakeLists.txt

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Core/Code/Testing/DCMTesting/DumpDCMMitkImage.cpp

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Core/Code/Testing/DCMTesting/Testing/CMakeLists.txt

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Core/Code/Testing/DCMTesting/Testing/files.cmake

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Core/Code/Testing/DCMTesting/Testing/mitkDCMPreloadedVolumeTest.cpp

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Core/Code/Testing/DCMTesting/Testing/mitkDCMTestingSanityTest.cpp

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Core/Code/Testing/DCMTesting/VerifyDCMMitkImageDump.cpp

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Core/Code/Testing/DCMTesting/files.cmake

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Core/Code/Testing/DCMTesting/mitkTestDCMLoading.cpp

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Core/Code/Testing/DCMTesting/mitkTestDCMLoading.h

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Core/Code/Testing/DICOMTesting

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Core/Code/Testing/DICOMTesting/CMakeLists.txt

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Core/Code/Testing/DICOMTesting/DumpDICOMMitkImage.cpp

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Core/Code/Testing/DICOMTesting/Testing

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Core/Code/Testing/DICOMTesting/Testing/CMakeLists.txt

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Core/Code/Testing/DICOMTesting/Testing/files.cmake

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Core/Code/Testing/DICOMTesting/Testing/mitkDICOMPreloadedVolumeTest.cpp

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Core/Code/Testing/DICOMTesting/Testing/mitkDICOMTestingSanityTest.cpp

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Core/Code/Testing/DICOMTesting/VerifyDICOMMitkImageDump.cpp

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Core/Code/Testing/DICOMTesting/files.cmake

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Core/Code/Testing/DICOMTesting/mitkTestDICOMLoading.cpp

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Core/Code/Testing/DICOMTesting/mitkTestDICOMLoading.h

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Core/Code/Testing/files.cmake

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Core/Code/Testing/mitkDicomSeriesReaderTest.cpp

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Core/Code/Testing/mitkLevelWindowTest.cpp

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Core/Code/TestingHelper/mitkTestingMacros.h

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Core/Documentation/Doxygen/Concepts/DICOMTesting.dox

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Core/Documentation/images/tilt-correction.jpg

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Examples/CMakeLists.txt

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Examples/Plugins/org.mitk.example.gui.opencv/CMakeLists.txt

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Examples/mitkdump/CMakeLists.txt

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Examples/mitkdump/files.cmake

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Examples/mitkdump/mitkdump.cpp

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Examples/mitkdumpdir/CMakeLists.txt

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Examples/mitkdumpdir/files.cmake

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Examples/mitkdumpdir/mitkdumpdir.cpp

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Modules/CMakeLists.txt

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Modules/DICOMReader/CMakeLists.txt

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Modules/DICOMReader/Documentation/Doxygen/Modules.dox

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Modules/DICOMReader/Documentation/Doxygen/tilt-correction.jpg

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Modules/DICOMReader/Documentation/images/implementeditkseriesgdcmreader.jpg

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Modules/DICOMReader/Documentation/images/tilt-correction.jpg

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Modules/DICOMReader/Resources/configurations/3D/classicreader.xml

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Modules/DICOMReader/Resources/configurations/3D/imageposition.xml

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Modules/DICOMReader/Resources/configurations/3D/imageposition_byacquisition.xml

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Modules/DICOMReader/Resources/configurations/3D/imagetime.xml

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Modules/DICOMReader/Resources/configurations/3D/instancenumber.xml

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Modules/DICOMReader/Resources/configurations/3D/slicelocation.xml

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Modules/DICOMReader/Resources/configurations/3DnT/classicreader.xml

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Modules/DICOMReader/TODOs.txt

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Modules/DICOMReader/Testing/CMakeLists.txt

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Modules/DICOMReader/Testing/files.cmake

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Modules/DICOMReader/Testing/mitkDICOMFileReaderTest.cpp

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Modules/DICOMReader/Testing/mitkDICOMFileReaderTestHelper.h

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Modules/DICOMReader/Testing/mitkDICOMFilenameSorter.cpp

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Modules/DICOMReader/Testing/mitkDICOMFilenameSorter.h

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Modules/DICOMReader/Testing/mitkDICOMITKSeriesGDCMReaderBasicsTest.cpp

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Modules/DICOMReader/Testing/mitkDICOMNullFileReader.cpp

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Modules/DICOMReader/Testing/mitkDICOMNullFileReader.h

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Modules/DICOMReader/Testing/mitkDICOMReaderConfiguratorTest.cpp

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Modules/DICOMReader/files.cmake

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Modules/DICOMReader/mitkClassicDICOMSeriesReader.cpp

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Modules/DICOMReader/mitkClassicDICOMSeriesReader.h

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Modules/DICOMReader/mitkDICOMDatasetAccess.h

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Modules/DICOMReader/mitkDICOMDatasetSorter.cpp

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Modules/DICOMReader/mitkDICOMDatasetSorter.h

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Modules/DICOMReader/mitkDICOMEnums.cpp

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Modules/DICOMReader/mitkDICOMEnums.h

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Modules/DICOMReader/mitkDICOMFileReader.cpp

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Modules/DICOMReader/mitkDICOMFileReader.h

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Modules/DICOMReader/mitkDICOMFileReaderSelector.cpp

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Modules/DICOMReader/mitkDICOMFileReaderSelector.h

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Modules/DICOMReader/mitkDICOMGDCMImageFrameInfo.cpp

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Modules/DICOMReader/mitkDICOMGDCMImageFrameInfo.h

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Modules/DICOMReader/mitkDICOMGDCMTagScanner.cpp

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Modules/DICOMReader/mitkDICOMGDCMTagScanner.h

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Modules/DICOMReader/mitkDICOMITKSeriesGDCMReader.cpp

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Modules/DICOMReader/mitkDICOMITKSeriesGDCMReader.h

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Modules/DICOMReader/mitkDICOMImageBlockDescriptor.cpp

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Modules/DICOMReader/mitkDICOMImageBlockDescriptor.h

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Modules/DICOMReader/mitkDICOMImageFrameInfo.cpp

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Modules/DICOMReader/mitkDICOMImageFrameInfo.h

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Modules/DICOMReader/mitkDICOMReaderConfigurator.cpp

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Modules/DICOMReader/mitkDICOMReaderConfigurator.h

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Modules/DICOMReader/mitkDICOMSortByTag.cpp

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Modules/DICOMReader/mitkDICOMSortByTag.h

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Modules/DICOMReader/mitkDICOMSortCriterion.cpp

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Modules/DICOMReader/mitkDICOMSortCriterion.h

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Modules/DICOMReader/mitkDICOMTag.cpp

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Modules/DICOMReader/mitkDICOMTag.h

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Modules/DICOMReader/mitkDICOMTagBasedSorter.cpp

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Modules/DICOMReader/mitkDICOMTagBasedSorter.h

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Modules/DICOMReader/mitkDICOMTagCache.cpp

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Modules/DICOMReader/mitkDICOMTagCache.h

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Modules/DICOMReader/mitkEquiDistantBlocksSorter.cpp

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Modules/DICOMReader/mitkEquiDistantBlocksSorter.h

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Modules/DICOMReader/mitkGantryTiltInformation.cpp

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Modules/DICOMReader/mitkGantryTiltInformation.h

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Modules/DICOMReader/mitkITKDICOMSeriesReaderHelper.cpp

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Modules/DICOMReader/mitkITKDICOMSeriesReaderHelper.h

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Modules/DICOMReader/mitkITKDICOMSeriesReaderHelper.txx

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Modules/DICOMReader/mitkNormalDirectionConsistencySorter.cpp

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Modules/DICOMReader/mitkNormalDirectionConsistencySorter.h

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Modules/DICOMReader/mitkSortByImagePositionPatient.cpp

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Modules/DICOMReader/mitkSortByImagePositionPatient.h

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Modules/DICOMReader/mitkThreeDnTDICOMSeriesReader.cpp

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Modules/DICOMReader/mitkThreeDnTDICOMSeriesReader.h

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Modules/DICOMTesting/CMakeLists.txt

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Modules/DICOMTesting/DumpDICOMMitkImage.cpp

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Modules/DICOMTesting/Testing/CMakeLists.txt

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Modules/DICOMTesting/Testing/files.cmake

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Modules/DICOMTesting/Testing/mitkDICOMLocaleTest.cpp

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Modules/DICOMTesting/Testing/mitkDICOMPreloadedVolumeTest.cpp

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Modules/DICOMTesting/Testing/mitkDICOMTestingSanityTest.cpp

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Modules/DICOMTesting/VerifyDICOMMitkImageDump.cpp

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Modules/DICOMTesting/files.cmake

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Modules/DICOMTesting/mitkTestDICOMLoading.cpp

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Modules/DICOMTesting/mitkTestDICOMLoading.h

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Modules/ImageStatistics/Testing/CMakeLists.txt

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Modules/ImageStatistics/Testing/mitkImageStatisticsCalculatorTest.cpp

Merge remote-tracking branch 'origin/bug-16744-integration-master' into bug…f5cf04bfe717Actions

Description

Details

Event Timeline

Merged Changes

Changes (139)

rMITKf5cf04bfe717

Core/Code/DataManagement/mitkLevelWindow.cpp

Core/Code/IO/mitkDicomSeriesReader.cpp

Core/Code/Rendering/mitkImageVtkMapper2D.cpp

Core/Code/Testing/CMakeLists.txt

Core/Code/Testing/DCMTesting/CMakeLists.txt

Core/Code/Testing/DCMTesting/DumpDCMMitkImage.cpp

Core/Code/Testing/DCMTesting/Testing/CMakeLists.txt

Core/Code/Testing/DCMTesting/Testing/files.cmake

Core/Code/Testing/DCMTesting/Testing/mitkDCMPreloadedVolumeTest.cpp

Core/Code/Testing/DCMTesting/Testing/mitkDCMTestingSanityTest.cpp

Core/Code/Testing/DCMTesting/VerifyDCMMitkImageDump.cpp

Core/Code/Testing/DCMTesting/files.cmake

Core/Code/Testing/DCMTesting/mitkTestDCMLoading.cpp

Core/Code/Testing/DCMTesting/mitkTestDCMLoading.h

Core/Code/Testing/DICOMTesting

Core/Code/Testing/DICOMTesting/CMakeLists.txt

Core/Code/Testing/DICOMTesting/DumpDICOMMitkImage.cpp

Core/Code/Testing/DICOMTesting/Testing

Core/Code/Testing/DICOMTesting/Testing/CMakeLists.txt

Core/Code/Testing/DICOMTesting/Testing/files.cmake

Core/Code/Testing/DICOMTesting/Testing/mitkDICOMPreloadedVolumeTest.cpp

Core/Code/Testing/DICOMTesting/Testing/mitkDICOMTestingSanityTest.cpp

Core/Code/Testing/DICOMTesting/VerifyDICOMMitkImageDump.cpp

Core/Code/Testing/DICOMTesting/files.cmake

Core/Code/Testing/DICOMTesting/mitkTestDICOMLoading.cpp

Core/Code/Testing/DICOMTesting/mitkTestDICOMLoading.h

Core/Code/Testing/files.cmake

Core/Code/Testing/mitkDicomSeriesReaderTest.cpp

Core/Code/Testing/mitkLevelWindowTest.cpp

Core/Code/TestingHelper/mitkTestingMacros.h

Core/Documentation/Doxygen/Concepts/DICOMTesting.dox

Core/Documentation/images/tilt-correction.jpg

Examples/CMakeLists.txt

Examples/Plugins/org.mitk.example.gui.opencv/CMakeLists.txt

Examples/mitkdump/CMakeLists.txt

Examples/mitkdump/files.cmake

Examples/mitkdump/mitkdump.cpp

Examples/mitkdumpdir/CMakeLists.txt

Examples/mitkdumpdir/files.cmake

Examples/mitkdumpdir/mitkdumpdir.cpp

Modules/CMakeLists.txt

Modules/DICOMReader/CMakeLists.txt

Modules/DICOMReader/Documentation/Doxygen/Modules.dox

Modules/DICOMReader/Documentation/Doxygen/tilt-correction.jpg

Modules/DICOMReader/Documentation/images/implementeditkseriesgdcmreader.jpg

Modules/DICOMReader/Documentation/images/tilt-correction.jpg

Modules/DICOMReader/Resources/configurations/3D/classicreader.xml

Modules/DICOMReader/Resources/configurations/3D/imageposition.xml

Modules/DICOMReader/Resources/configurations/3D/imageposition_byacquisition.xml

Modules/DICOMReader/Resources/configurations/3D/imagetime.xml

Modules/DICOMReader/Resources/configurations/3D/instancenumber.xml

Modules/DICOMReader/Resources/configurations/3D/slicelocation.xml

Modules/DICOMReader/Resources/configurations/3DnT/classicreader.xml

Modules/DICOMReader/TODOs.txt

Modules/DICOMReader/Testing/CMakeLists.txt

Modules/DICOMReader/Testing/files.cmake

Modules/DICOMReader/Testing/mitkDICOMFileReaderTest.cpp

Modules/DICOMReader/Testing/mitkDICOMFileReaderTestHelper.h

Modules/DICOMReader/Testing/mitkDICOMFilenameSorter.cpp

Modules/DICOMReader/Testing/mitkDICOMFilenameSorter.h

Modules/DICOMReader/Testing/mitkDICOMITKSeriesGDCMReaderBasicsTest.cpp

Modules/DICOMReader/Testing/mitkDICOMNullFileReader.cpp

Modules/DICOMReader/Testing/mitkDICOMNullFileReader.h

Modules/DICOMReader/Testing/mitkDICOMReaderConfiguratorTest.cpp

Modules/DICOMReader/files.cmake

Modules/DICOMReader/mitkClassicDICOMSeriesReader.cpp

Modules/DICOMReader/mitkClassicDICOMSeriesReader.h

Modules/DICOMReader/mitkDICOMDatasetAccess.h

Modules/DICOMReader/mitkDICOMDatasetSorter.cpp

Modules/DICOMReader/mitkDICOMDatasetSorter.h

Modules/DICOMReader/mitkDICOMEnums.cpp

Modules/DICOMReader/mitkDICOMEnums.h

Modules/DICOMReader/mitkDICOMFileReader.cpp

Merge remote-tracking branch 'origin/bug-16744-integration-master' into bug…
f5cf04bfe717
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