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T23325 adapt file header
33163e5385af
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Description

T23325 adapt file header

Summary:
adapt algorithms

adapt bioModelCalc

adapt boost masks

adapt core

adapt dicom

adapt dose

adapt example tests

adapt io

adapt indices

adapt interpolation

adapt models

adapt validation

adapt voxelizer tool

adapt missing files

Merge branch 'T23325-adaptFileHeader'

change encoding to utf8

Test Plan: run tests and check executable names

Reviewers: hentsch

Reviewed By: hentsch

Differential Revision: https://phabricator.mitk.org/D150

Details

Provenance
• wiesetAuthored on Jul 26 2018, 3:07 PM
• wiesetPushed on Jul 26 2018, 3:09 PM
Reviewer
hentsch
Differential Revision
Restricted Differential Revision
Parents
rRTTB8a75c455ff56: Added strict voxelization option also in BoostMaskGenerateMaskVoxelListThread.
Branches
Unknown
Tags
Unknown

Changes (342)
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Very Large Commit

This commit is very large. Load each file individually.
PathSize
apps/
BioModelCalc/
DoseAcc/
DoseMap/
DoseTool/
VoxelizerTool/
cmake/
code/
algorithms/
core/
indices/
interpolation/
ITKTransformation/
MatchPointTransformation/
io/
dicom/
helax/
itk/
models/
other/
masks/
models/
testing/
algorithms/
apps/
BioModelCalc/
DoseAcc/
DoseMap/
DoseTool/
VoxelizerTool/
core/
examples/
interpolation/
InterpolationITKTransformation/
InterpolationMatchPointTransformation/
io/
dicom/
helax/
itk/
models/
other/
masks/
models/
validation/

rRTTB33163e5385af

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RTToolboxConfigure.h.in

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apps/BioModelCalc/BioModelCalc.cpp

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apps/BioModelCalc/BioModelCalcHelper.cpp

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apps/BioModelCalc/BioModelCalcHelper.h

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apps/BioModelCalc/BioModelCmdLineParser.h

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apps/DoseAcc/DoseAcc.cpp

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apps/DoseAcc/DoseAccCmdLineParser.h

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apps/DoseAcc/DoseAccHelper.cpp

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apps/DoseAcc/DoseAccHelper.h

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apps/DoseMap/DoseMap.cpp

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apps/DoseMap/DoseMapApplicationData.h

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apps/DoseMap/DoseMapCmdLineParser.h

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apps/DoseMap/DoseMapHelper.cpp

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apps/DoseMap/DoseMapHelper.h

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apps/DoseTool/DoseToolCmdLineParser.h

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apps/DoseTool/DoseToolHelper.h

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apps/VoxelizerTool/VoxelizerTool.cpp

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apps/VoxelizerTool/VoxelizerToolApplicationData.h

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apps/VoxelizerTool/VoxelizerToolCmdLineParser.h

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apps/VoxelizerTool/VoxelizerToolHelper.cpp

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apps/VoxelizerTool/VoxelizerToolHelper.h

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cmake/moduleExports.h.in

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code/algorithms/rttbArithmetic.cpp

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code/algorithms/rttbArithmetic.h

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code/algorithms/rttbArithmetic.tpp

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code/algorithms/rttbBinaryFunctorAccessor.h

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code/algorithms/rttbBinaryFunctorAccessor.tpp

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code/algorithms/rttbDoseStatistics.cpp

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code/algorithms/rttbDoseStatistics.h

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code/algorithms/rttbDoseStatisticsCalculator.cpp

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code/algorithms/rttbDoseStatisticsCalculator.h

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code/algorithms/rttbDoseToVolumeMeasureCollection.cpp

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code/algorithms/rttbDoseToVolumeMeasureCollection.h

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code/algorithms/rttbDoseToVolumeMeasureCollectionCalculator.cpp

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code/algorithms/rttbDoseToVolumeMeasureCollectionCalculator.h

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code/algorithms/rttbDxVolumeToDoseMeasureCollectionCalculator.cpp

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code/algorithms/rttbDxVolumeToDoseMeasureCollectionCalculator.h

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code/algorithms/rttbMOCxVolumeToDoseMeasureCollectionCalculator.cpp

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code/algorithms/rttbMOCxVolumeToDoseMeasureCollectionCalculator.h

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code/algorithms/rttbMOHxVolumeToDoseMeasureCollectionCalculator.cpp

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code/algorithms/rttbMOHxVolumeToDoseMeasureCollectionCalculator.h

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code/algorithms/rttbMaxOHxVolumeToDoseMeasureCollectionCalculator.cpp

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code/algorithms/rttbMaxOHxVolumeToDoseMeasureCollectionCalculator.h

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code/algorithms/rttbMeasureCollection.cpp

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code/algorithms/rttbMeasureCollection.h

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code/algorithms/rttbMinOCxVolumeToDoseMeasureCollectionCalculator.cpp

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code/algorithms/rttbMinOCxVolumeToDoseMeasureCollectionCalculator.h

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code/algorithms/rttbVolumeToDoseMeasureCollection.cpp

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code/algorithms/rttbVolumeToDoseMeasureCollection.h

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code/algorithms/rttbVolumeToDoseMeasureCollectionCalculator.cpp

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code/algorithms/rttbVolumeToDoseMeasureCollectionCalculator.h

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code/algorithms/rttbVxDoseToVolumeMeasureCollectionCalculator.cpp

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code/algorithms/rttbVxDoseToVolumeMeasureCollectionCalculator.h

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code/core/rttbAccessorInterface.h

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code/core/rttbAccessorWithGeoInfoBase.cpp

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code/core/rttbAccessorWithGeoInfoBase.h

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code/core/rttbBaseType.h

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code/core/rttbDVH.cpp

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code/core/rttbDVH.h

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code/core/rttbDVHCalculator.cpp

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code/core/rttbDVHCalculator.h

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code/core/rttbDVHGeneratorInterface.h

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code/core/rttbDVHSet.cpp

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code/core/rttbDVHSet.h

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code/core/rttbDataNotAvailableException.h

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code/core/rttbDoseAccessorGeneratorBase.h

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code/core/rttbDoseAccessorGeneratorInterface.h

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code/core/rttbDoseAccessorInterface.h

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code/core/rttbDoseIteratorInterface.cpp

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code/core/rttbDoseIteratorInterface.h

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code/core/rttbException.h

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code/core/rttbExceptionMacros.h

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code/core/rttbGenericDoseIterator.cpp

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code/core/rttbGenericDoseIterator.h

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code/core/rttbGenericMaskedDoseIterator.cpp

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code/core/rttbGenericMaskedDoseIterator.h

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code/core/rttbGeometricInfo.cpp

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code/core/rttbGeometricInfo.h

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code/core/rttbIndexConversionInterface.h

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code/core/rttbIndexOutOfBoundsException.h

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code/core/rttbInvalidDoseException.h

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code/core/rttbInvalidParameterException.h

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code/core/rttbMappingOutsideOfImageException.h

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code/core/rttbMaskAccessorGeneratorBase.h

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code/core/rttbMaskAccessorGeneratorInterface.h

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code/core/rttbMaskAccessorInterface.h

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code/core/rttbMaskAccessorProcessorBase.h

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code/core/rttbMaskAccessorProcessorInterface.h

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code/core/rttbMaskVoxel.cpp

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code/core/rttbMaskVoxel.h

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code/core/rttbMaskedDoseIteratorInterface.cpp

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code/core/rttbMaskedDoseIteratorInterface.h

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code/core/rttbMutableDoseAccessorInterface.h

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code/core/rttbMutableMaskAccessorInterface.h

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code/core/rttbNullPointerException.h

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code/core/rttbPaddingException.h

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code/core/rttbStrVectorStructureSetGenerator.cpp

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code/core/rttbStrVectorStructureSetGenerator.h

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code/core/rttbStructure.cpp

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code/core/rttbStructure.h

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code/core/rttbStructureSet.cpp

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code/core/rttbStructureSet.h

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code/core/rttbStructureSetGeneratorInterface.h

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code/indices/rttbConformalIndex.cpp

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code/indices/rttbConformalIndex.h

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code/indices/rttbConformationNumber.cpp

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code/indices/rttbConformationNumber.h

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code/indices/rttbConformityIndex.cpp

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code/indices/rttbConformityIndex.h

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code/indices/rttbCoverageIndex.cpp

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code/indices/rttbCoverageIndex.h

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code/indices/rttbDoseIndex.cpp

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code/indices/rttbDoseIndex.h

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code/indices/rttbDvhBasedDoseIndex.cpp

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code/indices/rttbDvhBasedDoseIndex.h

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code/indices/rttbHomogeneityIndex.cpp

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code/indices/rttbHomogeneityIndex.h

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code/interpolation/ITKTransformation/rttbITKTransformation.cpp

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code/interpolation/ITKTransformation/rttbITKTransformation.h

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code/interpolation/MatchPointTransformation/rttbMatchPointTransformation.cpp

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code/interpolation/MatchPointTransformation/rttbMatchPointTransformation.h

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code/interpolation/rttbInterpolationBase.cpp

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code/interpolation/rttbInterpolationBase.h

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code/interpolation/rttbLinearInterpolation.cpp

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code/interpolation/rttbLinearInterpolation.h

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code/interpolation/rttbMappableDoseAccessorInterface.h

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code/interpolation/rttbNearestNeighborInterpolation.cpp

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code/interpolation/rttbNearestNeighborInterpolation.h

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code/interpolation/rttbRosuMappableDoseAccessor.h

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code/interpolation/rttbSimpleMappableDoseAccessor.h

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code/interpolation/rttbTransformationInterface.h

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code/io/dicom/rttbDVHDicomFileReader.cpp

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code/io/dicom/rttbDVHDicomFileReader.h

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code/io/dicom/rttbDcmrtException.h

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code/io/dicom/rttbDicomDoseAccessor.cpp

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code/io/dicom/rttbDicomDoseAccessor.h

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code/io/dicom/rttbDicomFileDoseAccessorGenerator.h

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code/io/dicom/rttbDicomFileDoseAccessorWriter.cpp

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code/io/dicom/rttbDicomFileDoseAccessorWriter.h

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code/io/dicom/rttbDicomFileReaderHelper.h

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code/io/dicom/rttbDicomFileStructureSetGenerator.h

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code/io/dicom/rttbDicomIODDoseAccessorGenerator.cpp

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code/io/dicom/rttbDicomIODDoseAccessorGenerator.h

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code/io/dicom/rttbDicomIODStructureSetGenerator.cpp

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code/io/dicom/rttbDicomIODStructureSetGenerator.h

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code/io/helax/rttbDicomHelaxDoseAccessor.cpp

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code/io/helax/rttbDicomHelaxDoseAccessor.h

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code/io/helax/rttbDicomHelaxFileDoseAccessorGenerator.cpp

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code/io/helax/rttbDicomHelaxFileDoseAccessorGenerator.h

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code/io/helax/rttbDicomHelaxIODVecDoseAccessorGenerator.cpp

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code/io/helax/rttbDicomHelaxIODVecDoseAccessorGenerator.h

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code/io/helax/rttbDicomIODDoseAccessorGenerator.cpp

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code/io/itk/itkDoseAccessorImageFilter.cpp

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code/io/itk/itkDoseAccessorImageFilter.h

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code/io/itk/itkMaskAccessorImageSource.cpp

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code/io/itk/itkMaskAccessorImageSource.h

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code/io/itk/rttbDoseAccessorConversionSettingInterface.h

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code/io/itk/rttbDoseAccessorProcessorBase.h

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code/io/itk/rttbDoseAccessorProcessorInterface.h

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code/io/itk/rttbFileDispatch.cpp

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code/io/itk/rttbFileDispatch.h

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code/io/itk/rttbGenericImageReader.cpp

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code/io/itk/rttbGenericImageReader.h

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code/io/itk/rttbITKException.h

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code/io/itk/rttbITKIOHelper.cpp

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code/io/itk/rttbITKIOHelper.h

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code/io/itk/rttbITKIOHelper.tpp

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code/io/itk/rttbITKImageAccessor.cpp

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code/io/itk/rttbITKImageAccessor.h

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code/io/itk/rttbITKImageAccessorConverter.cpp

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code/io/itk/rttbITKImageAccessorConverter.h

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code/io/itk/rttbITKImageAccessorGenerator.cpp

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code/io/itk/rttbITKImageAccessorGenerator.h

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code/io/itk/rttbITKImageFileAccessorGenerator.cpp

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code/io/itk/rttbITKImageFileAccessorGenerator.h

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code/io/itk/rttbITKImageFileMaskAccessorGenerator.cpp

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code/io/itk/rttbITKImageFileMaskAccessorGenerator.h

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code/io/itk/rttbITKImageMaskAccessor.cpp

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code/io/itk/rttbITKImageMaskAccessor.h

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code/io/itk/rttbITKImageMaskAccessorConverter.cpp

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code/io/itk/rttbITKImageMaskAccessorConverter.h

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code/io/itk/rttbITKImageMaskAccessorGenerator.cpp

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code/io/itk/rttbITKImageMaskAccessorGenerator.h

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code/io/itk/rttbImageReader.h

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code/io/itk/rttbImageReader.tpp

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code/io/itk/rttbImageWriter.cpp

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code/io/itk/rttbImageWriter.h

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code/io/models/rttbModelXMLWriter.cpp

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code/io/models/rttbModelXMLWriter.h

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code/io/other/rttbDVHXMLFileReader.cpp

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code/io/other/rttbDVHXMLFileReader.h

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code/io/other/rttbDVHXMLFileWriter.cpp

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code/io/other/rttbDVHXMLFileWriter.h

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code/io/other/rttbDoseStatisticsXMLReader.cpp

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code/io/other/rttbDoseStatisticsXMLReader.h

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code/io/rttbDVHWriterInterface.h

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code/masks/rttbBoostMask.cpp

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code/masks/rttbBoostMask.h

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code/masks/rttbBoostMaskAccessor.cpp

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code/masks/rttbBoostMaskAccessor.h

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code/masks/rttbBoostMaskGenerateMaskVoxelListThread.cpp

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code/masks/rttbBoostMaskGenerateMaskVoxelListThread.h

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code/masks/rttbBoostMaskVoxelizationThread.cpp

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code/masks/rttbBoostMaskVoxelizationThread.h

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code/masks/rttbGenericMutableMaskAccessor.cpp

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code/masks/rttbGenericMutableMaskAccessor.h

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code/models/rttbBaseTypeModels.h

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code/models/rttbBioModel.cpp

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code/models/rttbBioModel.h

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code/models/rttbBioModelCurve.cpp

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code/models/rttbBioModelCurve.h

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code/models/rttbBioModelScatterPlots.cpp

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code/models/rttbBioModelScatterPlots.h

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code/models/rttbDoseBasedModels.cpp

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code/models/rttbDoseBasedModels.h

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code/models/rttbDvhBasedModels.cpp

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code/models/rttbDvhBasedModels.h

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code/models/rttbIntegration.cpp

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code/models/rttbIntegration.h

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code/models/rttbLQModelAccessor.cpp

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code/models/rttbLQModelAccessor.h

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code/models/rttbNTCPLKBModel.cpp

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code/models/rttbNTCPLKBModel.h

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code/models/rttbNTCPModel.h

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code/models/rttbNTCPRSModel.cpp

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code/models/rttbNTCPRSModel.h

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code/models/rttbTCPLQModel.cpp

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code/models/rttbTCPLQModel.h

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code/models/rttbTCPModel.cpp

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code/models/rttbTCPModel.h

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testing/algorithms/ArithmeticTest.cpp

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testing/algorithms/BinaryFunctorAccessorTest.cpp

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testing/algorithms/DoseStatisticsCalculatorTest.cpp

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testing/algorithms/DoseStatisticsTest.cpp

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testing/algorithms/rttbAlgorithmsTests.cpp

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testing/apps/BioModelCalc/BioModelCalcInvalidParametersTest.cpp

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testing/apps/BioModelCalc/BioModelCalcParameterMapsTest.cpp

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testing/apps/BioModelCalc/BioModelCalcSimpleTest.cpp

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testing/apps/BioModelCalc/BioModelCalcTests.cpp

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testing/apps/DoseAcc/DoseAccInvalidParametersTest.cpp

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testing/apps/DoseAcc/DoseAccNeutralWeightTest.cpp

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testing/apps/DoseAcc/DoseAccSimpleTest.cpp

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testing/apps/DoseAcc/DoseAccTests.cpp

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testing/apps/DoseMap/DoseMapInvalidParametersTest.cpp

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testing/apps/DoseMap/DoseMapSimpleTest.cpp

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testing/apps/DoseMap/DoseMapTests.cpp

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testing/apps/DoseTool/DoseToolDVHTest.cpp

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testing/apps/DoseTool/DoseToolDicomDoseTest.cpp

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testing/apps/DoseTool/DoseToolITKDoseTest.cpp

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testing/apps/DoseTool/DoseToolInvalidParametersTest.cpp

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testing/apps/DoseTool/DoseToolRegexTest.cpp

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testing/apps/DoseTool/DoseToolTests.cpp

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testing/apps/VoxelizerTool/VoxelizerToolDifferentCommandsTest.cpp

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testing/apps/VoxelizerTool/VoxelizerToolIncorrectCommandsTest.cpp

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testing/apps/VoxelizerTool/VoxelizerToolVoxelValueTest.cpp

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testing/core/BaseTypeTest.cpp

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testing/core/CreateTestStructure.cpp

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testing/core/CreateTestStructure.h

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testing/core/DVHCalculatorTest.cpp

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testing/core/DVHSetTest.cpp

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testing/core/DVHTest.cpp

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testing/core/DummyDVHGenerator.cpp

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testing/core/DummyDVHGenerator.h

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testing/core/DummyDoseAccessor.cpp

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testing/core/DummyDoseAccessor.h

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testing/core/DummyInhomogeneousDoseAccessor.cpp

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testing/core/DummyInhomogeneousDoseAccessor.h

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testing/core/DummyMaskAccessor.cpp

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testing/core/DummyMaskAccessor.h

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testing/core/DummyMutableDoseAccessor.cpp

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testing/core/DummyMutableDoseAccessor.h

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testing/core/DummyStructure.cpp

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testing/core/DummyStructure.h

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testing/core/GenericDoseIteratorTest.cpp

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testing/core/GenericMaskedDoseIteratorTest.cpp

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testing/core/GeometricInfoTest.cpp

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testing/core/MaskVoxelTest.cpp

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testing/core/StrVectorStructureSetGeneratorTest.cpp

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testing/core/StructureSetTest.cpp

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testing/core/StructureTest.cpp

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testing/core/rttbCoreTests.cpp

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testing/examples/RTBioModelExampleTest.cpp

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testing/examples/RTBioModelScatterPlotExampleTest.cpp

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testing/examples/RTDVHTest.cpp

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testing/examples/RTDoseIndexTest.cpp

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testing/examples/RTDoseStatisticsDicomTest.cpp

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testing/examples/rttbTestExamples.cpp

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testing/interpolation/DummyTransformation.cpp

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testing/interpolation/DummyTransformation.h

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testing/interpolation/InterpolationITKTransformation/SimpleMappableDoseAccessorWithITKTest.cpp

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testing/interpolation/InterpolationMatchPointTransformation/SimpleMappableDoseAccessorWithMatchPointTest.cpp

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testing/interpolation/InterpolationMatchPointTransformation/registrationHelper.cpp

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testing/interpolation/InterpolationMatchPointTransformation/registrationHelper.h

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testing/interpolation/InterpolationMatchPointTransformation/registrationTest.h

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testing/interpolation/InterpolationMatchPointTransformation/rttbInterpolationMatchPointTests.cpp

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testing/interpolation/InterpolationMatchPointTransformation/simpleRegistrationWorkflow.cpp

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testing/interpolation/InterpolationMatchPointTransformation/simpleRegistrationWorkflow.h

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testing/interpolation/RosuMappableDoseAccessorTest.cpp

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testing/interpolation/SimpleMappableDoseAccessorTest.cpp

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testing/interpolation/rttbInterpolationTests.cpp

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testing/io/dicom/DicomDoseAccessorConverterTest.cpp

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testing/io/dicom/DicomDoseAccessorGeneratorTest.cpp

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testing/io/dicom/DicomFileReaderHelperTest.cpp

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testing/io/dicom/DicomIOTest.cpp

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testing/io/dicom/DicomStructureSetGeneratorTest.cpp

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testing/io/dicom/rttbIOTests.cpp

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testing/io/helax/DicomHelaxDoseAccessorGeneratorTest.cpp

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testing/io/helax/DicomHelaxIOTest.cpp

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testing/io/helax/rttbHelaxIOTests.cpp

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testing/io/itk/ITKBioModelAccessorConverterTest.cpp

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testing/io/itk/ITKDoseAccessorConverterTest.cpp

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testing/io/itk/ITKDoseAccessorGeneratorTest.cpp

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testing/io/itk/ITKIOTest.cpp

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testing/io/itk/ITKMaskAccessorConverterTest.cpp

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testing/io/itk/ITKMaskAccessorGeneratorTest.cpp

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testing/io/itk/rttbITKIOTests.cpp

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testing/io/models/ModelsIOTest.cpp

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testing/io/models/rttbModelsIOTests.cpp

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testing/io/other/CompareDVH.cpp

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testing/io/other/CompareDVH.h

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testing/io/other/CompareDoseStatistic.cpp

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testing/io/other/CompareDoseStatistic.h

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testing/io/other/DVHXMLIOTest.cpp

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testing/io/other/DoseStatisticsIOTest.cpp

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testing/io/other/OtherIOTest.cpp

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testing/io/other/rttbIOTests.cpp

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testing/io/rttbDoseAccessorTester.cpp

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testing/io/rttbDoseAccessorTester.h

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testing/masks/BoostMaskTest.cpp

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testing/masks/rttbBoostMaskTests.cpp

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testing/models/BioModelScatterPlotTest.cpp

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testing/models/BioModelTest.cpp

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testing/models/DummyModel.cpp

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testing/models/DummyModel.h

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testing/models/DvhBasedModelsTest.cpp

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testing/models/LQModelAccessorTest.cpp

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testing/models/rttbModelsTest.cpp

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testing/models/rttbScatterTester.cpp

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testing/models/rttbScatterTester.h

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testing/validation/VoxelizationDVHComparisonTest.cpp

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testing/validation/VoxelizationValidationTest.cpp

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testing/validation/rttbValidationTests.cpp

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