Diffusion MITK 110279e34d11

MedSAM tool code
110279e34d11
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Description

MedSAM tool code

Summary: New MedSAM tool with boundbox.

Test Plan: Coming soon

Reviewers: floca, kislinsk, O1 MITK Reviewer Group I

Reviewed By: floca, O1 MITK Reviewer Group I

Differential Revision: https://phabricator.mitk.org/D911

Details

Provenance

a178n	Authored on Fri, Apr 26, 11:12 PM
a178n	Pushed on Sun, Apr 28, 10:17 PM

Reviewer

O1: MITK Reviewer Group I

Differential Revision

Restricted Differential Revision

Parents

rMITK7c26ba08e742: Change std::stringstream for std::string
rMITKb826bd4bc453: T30399-Fix_statistic_view_NA

Branches

Unknown

Tags

Unknown

Event Timeline

a178n committed rMITK110279e34d11: MedSAM tool code (authored by a178n).Sun, Apr 28, 10:17 PM

a178n added an edge: Restricted Differential Revision.

kislinsk mentioned this in T30407: 2024 Week 18 (Very Early May).Thu, May 2, 7:56 AM

Merged Changes

7c26ba08e742 Change std::stringstream for std::string
Author
a178n
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547fe487ac24 Medsam code refactoring changes
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a178n
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85eb9f1c4e42 Merge branch 'develop' into feature/T30355-medsam-tool
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a178n
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06812e8f1a0f Kill process immediately when stderr event to prevent invalid ProcessID pointer
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a178n
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8691a73a8e78 SAM tool install check updates
Author
a178n
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555bca428914 Model type preference change don't need reinit anymore
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a178n
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a768f541e094 Reset Preview will be more responsive
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a178n
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eb4eacd02549 Merge branch 'develop' into feature/T30355-medsam-tool
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a178n
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7e92989d521f MedSAM "Reset RoI" will also clear preview segmentation if any
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a178n
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2f365d2ccca4 Merge branch 'develop' into feature/T30355-medsam-tool
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a178n
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527b63478043 MedSAM boundingbox coordinate extraction logic update
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a178n
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11a0ed742065 MedSAM Preference UI update
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a178n
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3b1949e21053 Add MedSAM code documentation
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a178n
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064236383068 MedSAM boundingbox bugfixes
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a178n
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135db56eddb6 Register boundbox in segmentation plugin
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a178n
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2f44c0c6d55e MedSAM Bounding box changes
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a178n
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c0fc994e4e12 MedSAM tool minor update for testing
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a178n
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bf359a964484 MedSAM tool inital changes
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a178n
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Changes (21)

Path

Size

Packages

Modules/

ModuleList.cmake

Segmentation/

CMakeLists.txt

O1: MITK Reviewer Group I

Interactions/

mitkMedSAMTool.cpp

O1: MITK Reviewer Group I

mitkMedSAMTool.h

O1: MITK Reviewer Group I

mitkSegWithPreviewTool.cpp

O1: MITK Reviewer Group I

mitkSegmentAnythingProcessExecutor.cpp

O1: MITK Reviewer Group I

mitkSegmentAnythingPythonService.cpp

O1: MITK Reviewer Group I

mitkSegmentAnythingPythonService.h

O1: MITK Reviewer Group I

mitkSegmentAnythingTool.cpp

O1: MITK Reviewer Group I

mitkSegmentAnythingTool.h

O1: MITK Reviewer Group I

files.cmake

O1: MITK Reviewer Group I

SegmentationUI/

Qmitk/

	QmitkMedSAMGUIControls.ui
	QmitkSegmentAnythingGUIControls.ui

O1: MITK Reviewer Group I

	QmitkMedSAMToolGUI.cpp
	QmitkSegmentAnythingToolGUI.cpp

O1: MITK Reviewer Group I

	QmitkMedSAMToolGUI.h
	QmitkSegmentAnythingToolGUI.h

O1: MITK Reviewer Group I

QmitkSegmentAnythingToolGUI.cpp

O1: MITK Reviewer Group I

files.cmake

O1: MITK Reviewer Group I

Plugins/

org.mitk.gui.qt.segmentation/

src/

QmitkSegmentAnythingPreferencePage.cpp

O1: MITK Reviewer Group I

QmitkSegmentAnythingPreferencePage.h

O1: MITK Reviewer Group I

QmitkSegmentAnythingPreferencePage.ui

O1: MITK Reviewer Group I

internal/

QmitkSegmentationView.cpp

O1: MITK Reviewer Group I

mitkPluginActivator.cpp

O1: MITK Reviewer Group I

rMITK110279e34d11

View Options

Modules/ModuleList.cmake

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Modules/Segmentation/CMakeLists.txt

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Modules/Segmentation/Interactions/mitkMedSAMTool.cpp

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Modules/Segmentation/Interactions/mitkMedSAMTool.h

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Modules/Segmentation/Interactions/mitkSegWithPreviewTool.cpp

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Modules/Segmentation/Interactions/mitkSegmentAnythingProcessExecutor.cpp

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Modules/Segmentation/Interactions/mitkSegmentAnythingPythonService.cpp

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Modules/Segmentation/Interactions/mitkSegmentAnythingPythonService.h

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Modules/Segmentation/Interactions/mitkSegmentAnythingTool.cpp

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Modules/Segmentation/Interactions/mitkSegmentAnythingTool.h

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Modules/Segmentation/files.cmake

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Modules/SegmentationUI/Qmitk/QmitkMedSAMGUIControls.ui

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Modules/SegmentationUI/Qmitk/QmitkMedSAMToolGUI.cpp

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Modules/SegmentationUI/Qmitk/QmitkMedSAMToolGUI.h

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Modules/SegmentationUI/Qmitk/QmitkSegmentAnythingToolGUI.cpp

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Modules/SegmentationUI/files.cmake

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Plugins/org.mitk.gui.qt.segmentation/src/QmitkSegmentAnythingPreferencePage.cpp

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Plugins/org.mitk.gui.qt.segmentation/src/QmitkSegmentAnythingPreferencePage.h

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Plugins/org.mitk.gui.qt.segmentation/src/QmitkSegmentAnythingPreferencePage.ui

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Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationView.cpp

View Options

Plugins/org.mitk.gui.qt.segmentation/src/internal/mitkPluginActivator.cpp

MedSAM tool code110279e34d11Actions

Description

Details

Event Timeline

Merged Changes

Changes (21)

rMITK110279e34d11

Modules/ModuleList.cmake

Modules/Segmentation/CMakeLists.txt

Modules/Segmentation/Interactions/mitkMedSAMTool.cpp

Modules/Segmentation/Interactions/mitkMedSAMTool.h

Modules/Segmentation/Interactions/mitkSegWithPreviewTool.cpp

Modules/Segmentation/Interactions/mitkSegmentAnythingProcessExecutor.cpp

Modules/Segmentation/Interactions/mitkSegmentAnythingPythonService.cpp

Modules/Segmentation/Interactions/mitkSegmentAnythingPythonService.h

Modules/Segmentation/Interactions/mitkSegmentAnythingTool.cpp

Modules/Segmentation/Interactions/mitkSegmentAnythingTool.h

Modules/Segmentation/files.cmake

Modules/SegmentationUI/Qmitk/QmitkMedSAMGUIControls.ui

Modules/SegmentationUI/Qmitk/QmitkMedSAMToolGUI.cpp

Modules/SegmentationUI/Qmitk/QmitkMedSAMToolGUI.h

Modules/SegmentationUI/Qmitk/QmitkSegmentAnythingToolGUI.cpp

Modules/SegmentationUI/files.cmake

Plugins/org.mitk.gui.qt.segmentation/src/QmitkSegmentAnythingPreferencePage.cpp

Plugins/org.mitk.gui.qt.segmentation/src/QmitkSegmentAnythingPreferencePage.h

Plugins/org.mitk.gui.qt.segmentation/src/QmitkSegmentAnythingPreferencePage.ui

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationView.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/mitkPluginActivator.cpp

MedSAM tool code
110279e34d11
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