This is irritating in releases as the filepath does propably not exist on the machine.
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The log system makes use of the FILE macro, which depends on the preprocessor parametrization. It therefore might be possible to adapt the build system to work with relative paths.
Another option would be string parsing during runtime in the LogMessage constructor and searching for the repository location. This is however time consuming and can be tricky, if someone renames the "MITK" repository directory.
Both options are unfavorable for the benefit they actually achieve.