Cleanup prototype signal generation

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User neher has pushed new remote branch:

bug-18038-PrototypeCleanup

[ec644b]: Merge branch 'bug-18038-PrototypeCleanup'

Merged commits:

2014-09-02 14:21:55 Peter Neher [a26859]
finished parameter refactoring. mitk data update

2014-09-01 19:05:34 Peter Neher [bff849]
refactoring parameters

2014-09-01 16:31:42 Peter Neher [8acf6a]
refactoring parameters

2014-08-29 19:48:25 Peter Neher [37bfa4]
moved loading and saving of fiberfox parameters to parameter class

2014-08-27 14:02:32 Peter Neher [659f38]
removed volume fraction writer

2014-08-22 13:34:15 Peter Neher [d02d6f]
separation angle parameter

2014-08-22 12:34:22 Peter Neher [b9760b]
moved motion to dedicated method

2014-08-22 11:50:46 Peter Neher [7db44d]
moved simulation of non-fiber compartments into dedicated method

2014-08-22 10:52:32 Peter Neher [2f4538]
correctly using all compartments with main fiber directions

2014-08-22 10:25:13 Peter Neher [459aaf]
randomizing sticks and prototype signals correctly