In previous versions I used (e.g. MITK v2022.04) :
<?xml version='1.0' encoding='utf-8'?> <node UID="Node_1"><data type="Image" file="get-input-data/1.3.12.2.1107.5.1.4.73104.30000020081307523376400012736.dcm" /><properties file="image_props" /></node>
If I try to open a scene file with such content in MITK v2022.10 , MITK closes/crashes directly:
=============================== Run an awesome MITK Application =============================== /data/batch/1.3.12.2.1107.5.1.4.73104.30000020081307523376400012735/ /data/batch/1.3.12.2.1107.5.1.4.73104.30000020081307523376400012735/application-mitk-flow [sudo] password for mitk: /data/batch/1.3.12.2.1107.5.1.4.73104.30000020081307523376400012735/application-mitk-flow exist /home/mitk/Desktop/startMITK.sh: 22: [[: not found /home/mitk/Desktop/startMITK.sh: 22: [[: not found /home/mitk/Desktop/startMITK.sh: 22: [[: not found /home/mitk/Desktop/startMITK.sh: 22: [[: not found /home/mitk/Desktop/startMITK.sh: 22: [[: not found /home/mitk/Desktop/startMITK.sh: 22: [[: not found /home/mitk/Desktop/startMITK.sh: 22: [[: not found /home/mitk/Desktop/startMITK.sh: 22: [[: not found /home/mitk/Desktop/startMITK.sh: 22: [[: not found /home/mitk/Desktop/startMITK.sh: 22: [[: not found QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-mitk' Using database: "/home/mitk/.local/share/DKFZ/MITK FlowBench_4056653626/plugins.db" Using database: "/home/mitk/.local/share/DKFZ/MITK FlowBench_4056653626/plugins.db" Using database: "/home/mitk/.local/share/DKFZ/MITK FlowBench_4056653626/plugins.db" Tue Dec 6 13:49:23 2022 Debug: org.commontk.eventadmin.LogLevel=2 in startOrUpdate, /home/ubuntu/jenkins-agent/MITK/Kaapana/FlowBench/build/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:215 Tue Dec 6 13:49:23 2022 Debug: org.commontk.eventadmin.CacheSize=30 in startOrUpdate, /home/ubuntu/jenkins-agent/MITK/Kaapana/FlowBench/build/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:217 Tue Dec 6 13:49:23 2022 Debug: org.commontk.eventadmin.ThreadPoolSize=20 in startOrUpdate, /home/ubuntu/jenkins-agent/MITK/Kaapana/FlowBench/build/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:219 Tue Dec 6 13:49:23 2022 Debug: org.commontk.eventadmin.Timeout=5000 in startOrUpdate, /home/ubuntu/jenkins-agent/MITK/Kaapana/FlowBench/build/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:221 Tue Dec 6 13:49:23 2022 Debug: org.commontk.eventadmin.RequireTopic=true in startOrUpdate, /home/ubuntu/jenkins-agent/MITK/Kaapana/FlowBench/build/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:223 Tue Dec 6 13:49:23 2022 Debug: org.commontk.eventadmin.LogLevel=2 in startOrUpdate, /home/ubuntu/jenkins-agent/MITK/Kaapana/FlowBench/build/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:215 Tue Dec 6 13:49:23 2022 Debug: org.commontk.eventadmin.CacheSize=30 in startOrUpdate, /home/ubuntu/jenkins-agent/MITK/Kaapana/FlowBench/build/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:217 Tue Dec 6 13:49:23 2022 Debug: org.commontk.eventadmin.ThreadPoolSize=20 in startOrUpdate, /home/ubuntu/jenkins-agent/MITK/Kaapana/FlowBench/build/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:219 Tue Dec 6 13:49:23 2022 Debug: org.commontk.eventadmin.Timeout=5000 in startOrUpdate, /home/ubuntu/jenkins-agent/MITK/Kaapana/FlowBench/build/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:221 Tue Dec 6 13:49:23 2022 Debug: org.commontk.eventadmin.RequireTopic=true in startOrUpdate, /home/ubuntu/jenkins-agent/MITK/Kaapana/FlowBench/build/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:223 [Tue Dec 6 13:49:23 2022 0.435] Logfile: /home/mitk/.local/share/DKFZ/MITK FlowBench_4056653626/data/9/mitk-0.log --------------------------------------------------------------- System: mitk-flow-f20aab40-2-798fffc9d8-wlbzw Processor: Unknown P6 family Cache: 16384 Clock: 1995.312 Physical CPUs: 16 Logical CPUs: 16 Virtual Memory: Total: 0 Available: 0 Physical Memory: Total: 32090 Available: 24597 OSName: Linux Release: 5.4.0-122-generic Version: #138-Ubuntu SMP Wed Jun 22 15:00:31 UTC 2022 Platform: x86_64 Operating System is 64 bit ITK Version: 5.2.1 Name Of Probe (Time) Iterations Total (s) Min (s) Mean (s) Max (s) StdDev (s) Check input for DCM 1 0.00139689 0.00139689 0.00139689 0.00139689 0 Condensing 3D blocks 1 3.09944e-06 3.09944e-06 3.09944e-06 3.09944e-06 0 EquiDistantBlocksSorter 1 0.000221014 0.000221014 0.000221014 0.000221014 0 Output 1 0.000172138 0.000172138 0.000172138 0.000172138 0 Reset 1 9.53674e-07 9.53674e-07 9.53674e-07 9.53674e-07 0 Sorting frames 1 0.00231695 0.00231695 0.00231695 0.00231695 0 Sorting step 0 1 0.00120187 0.00120187 0.00120187 0.00120187 0 Sorting step 1 1 0.000856161 0.000856161 0.000856161 0.000856161 0 --------------------------------------------------------------- [0.676] Reader 0 (Instance Number, consecutive) suggests 1 3D blocks --------------------------------------------------------------- System: mitk-flow-f20aab40-2-798fffc9d8-wlbzw Processor: Unknown P6 family Cache: 16384 Clock: 1995.312 Physical CPUs: 16 Logical CPUs: 16 Virtual Memory: Total: 0 Available: 0 Physical Memory: Total: 32090 Available: 24595 OSName: Linux Release: 5.4.0-122-generic Version: #138-Ubuntu SMP Wed Jun 22 15:00:31 UTC 2022 Platform: x86_64 Operating System is 64 bit ITK Version: 5.2.1 Name Of Probe (Time) Iterations Total (s) Min (s) Mean (s) Max (s) StdDev (s) Check input for DCM 1 0.00139308 0.00139308 0.00139308 0.00139308 0 Condensing 3D blocks 1 5.00679e-06 5.00679e-06 5.00679e-06 5.00679e-06 0 EquiDistantBlocksSorter 1 0.000205994 0.000205994 0.000205994 0.000205994 0 Output 1 0.000135183 0.000135183 0.000135183 0.000135183 0 Reset 1 1.50204e-05 1.50204e-05 1.50204e-05 1.50204e-05 0 Sorting frames 1 0.00409698 0.00409698 0.00409698 0.00409698 0 Sorting step 0 1 0.00220394 0.00220394 0.00220394 0.00220394 0 Sorting step 1 1 0.00163794 0.00163794 0.00163794 0.00163794 0 --------------------------------------------------------------- Aborted (core dumped)
I can fix this problem, by directly adding the properties to the data:
<?xml version='1.0' encoding='utf-8'?> <node UID="Node_1"> <data type="Image" file="get-input-data/1.3.12.2.1107.5.1.4.73104.30000020081307523376400012736.dcm" > <properties file="image_props" /> </data> </node>
The question is now: Did I have a bug in my previous versions, which is now showing or did something in general change in the scene files?
Are older "real" not generated MITK scene files also affected?