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gaoh (Hanno Gao)
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Sep 3 2018, 11:01 AM (124 w, 3 d)

Recent Activity

Yesterday

gaoh reopened T28127: Reopen segmentation in MITK as "Open".

@floca I might have found a dataset, where even the new number is not enough:
P:\Gao\mitk-testdata\

Wed, Jan 20, 9:44 PM · Request for Discussion, MITK (2020), Restricted Project, Kaapana (internal)
gaoh moved T28127: Reopen segmentation in MITK from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Wed, Jan 20, 10:32 AM · Request for Discussion, MITK (2020), Restricted Project, Kaapana (internal)

Fri, Jan 15

gaoh added a comment to T28159: Officially support MITK using system Qt.

yes exactly, the problem with the scripted version, ist still, that it is necessary to provide credentials. That was fine, as long we were the only ones creating the containers.
The version of @nolden downloading the packages in ubuntu allows others to just build the container, without having to provide credentials at all.

Fri, Jan 15, 12:35 PM · CI, Kaapana (internal), Request for Discussion, MITK

Thu, Jan 14

gaoh added a member for Kaapana (internal): e249r.
Thu, Jan 14, 9:39 AM

Wed, Jan 13

gaoh added a comment to T28127: Reopen segmentation in MITK.

Oh I forgot to mention: the segmentation is saved as dicom-seg.

Wed, Jan 13, 10:09 AM · Request for Discussion, MITK (2020), Restricted Project, Kaapana (internal)
gaoh raised the priority of T28127: Reopen segmentation in MITK from High to Unbreak Now!.
Wed, Jan 13, 10:06 AM · Request for Discussion, MITK (2020), Restricted Project, Kaapana (internal)

Thu, Jan 7

gaoh committed rKAAPANAa17c190080be: CTP has additonal options: (authored by gaoh).
CTP has additonal options:
Thu, Jan 7, 11:11 AM

Dec 21 2020

gaoh triaged T28127: Reopen segmentation in MITK as High priority.
Dec 21 2020, 9:57 AM · Request for Discussion, MITK (2020), Restricted Project, Kaapana (internal)

Dec 17 2020

gaoh committed rKAAPANA7f87a107aac8: added change of Kaapana Operators to the extention dir: (authored by gaoh).
added change of Kaapana Operators to the extention dir:
Dec 17 2020, 11:48 AM

Dec 16 2020

gaoh committed rKAAPANA491bdaa1f831: removed wrong files (authored by gaoh).
removed wrong files
Dec 16 2020, 1:45 PM
gaoh committed rKAAPANA731c8a79f8b8: corrected naming issues. (authored by gaoh).
corrected naming issues.
Dec 16 2020, 12:50 PM

Dec 15 2020

gaoh committed rKAAPANA2a5c06d333a8: renaming and adding missing files (authored by gaoh).
renaming and adding missing files
Dec 15 2020, 3:29 PM
gaoh committed rKAAPANA1cee38d6aed2: - Update MITK-volume (to current dev) (authored by gaoh).
- Update MITK-volume (to current dev)
Dec 15 2020, 10:42 AM

Dec 10 2020

gaoh removed a project from T27968: CTP gets stuck on large import: Request for Discussion.
Dec 10 2020, 10:37 AM · Kaapana (internal)
gaoh moved T27968: CTP gets stuck on large import from Discussion to Backlog on the Kaapana (internal) board.

We need a dataset to reporduce the problem, to setup a testsetup.

Dec 10 2020, 10:37 AM · Kaapana (internal)

Dec 1 2020

gaoh removed a project from T24398: Dicom plugin: Retrieve does not work: Missing Info.
Dec 1 2020, 11:03 AM · MITK (2020)
gaoh added a comment to T24398: Dicom plugin: Retrieve does not work.

So I tested it with Orthanc (without CGET only):
With 2018.04.2 retrieve works. With the current develop branch MITK crashes with the same exception:

Dec 1 2020, 11:02 AM · MITK (2020)
gaoh renamed T24398: Dicom plugin: Retrieve does not work from Dicom plugin: wdb Retrieve does not work to Dicom plugin: Retrieve does not work.
Dec 1 2020, 10:59 AM · MITK (2020)

Nov 30 2020

gaoh added a comment to T27968: CTP gets stuck on large import.

Have you checked, if the dataset (or the slices) are already in the PACs. In my case (I got the error, when sending data from airflow to the PACs), the files creating the 409 were already in DCM4CHE.

Nov 30 2020, 11:33 AM · Kaapana (internal)
gaoh added a comment to T24398: Dicom plugin: Retrieve does not work.

Oh sorry, I thought it was clear, because the title is wDB related:
I used the wDB. I did not test it with a different PACs system, but I can try and report back...

Nov 30 2020, 9:17 AM · MITK (2020)

Nov 26 2020

gaoh added a comment to T27968: CTP gets stuck on large import.

In T27573 we discussed the problem of data transfer from CTP to DCM4CHE.
So basically it is a kind of similar problem: A datatransfer between CTP and DCM4CHE fails.
The problem is then, CTP just keeps the data in the queue (here) or inserts in the quarantine folder (T27573).
Anyway, we do not get notified, that there is a problem.

Nov 26 2020, 12:09 PM · Kaapana (internal)

Nov 25 2020

gaoh placed T24398: Dicom plugin: Retrieve does not work up for grabs.

So for the current develop:
With or without CGET activated. When trying to Retrieve a dataset after Query, I get an Exception:

Nov 25 2020, 3:36 PM · MITK (2020)
gaoh closed Restricted Maniphest Task, a subtask of T27196: Rewrite packaging of MITK, as Invalid.
Nov 25 2020, 10:57 AM · MITK, Next Milestone, Cleared

Nov 24 2020

gaoh claimed T24398: Dicom plugin: Retrieve does not work.
Nov 24 2020, 5:21 PM · MITK (2020)

Nov 17 2020

gaoh added a comment to T27968: CTP gets stuck on large import.

The CTP thread responsible for sending the data to the PACs crashed:

Nov 17 2020, 3:57 PM · Kaapana (internal)

Oct 9 2020

gaoh committed rKAAPANA98d91ae5f20c: Merge branch 'develop' of https://phabricator.mitk.org/source/kaapana into… (authored by gaoh).
Merge branch 'develop' of https://phabricator.mitk.org/source/kaapana into…
Oct 9 2020, 1:53 PM
gaoh committed rKAAPANA608d128d34c5: wrong file name fixed (authored by gaoh).
wrong file name fixed
Oct 9 2020, 1:53 PM
gaoh committed rKAAPANA1bacda9ea1c7: Merge branch 'develop' of https://phabricator.mitk.org/source/kaapana into… (authored by gaoh).
Merge branch 'develop' of https://phabricator.mitk.org/source/kaapana into…
Oct 9 2020, 1:01 PM
gaoh committed rKAAPANA579379ffff0f: set correct owner in mitk-flow (authored by gaoh).
set correct owner in mitk-flow
Oct 9 2020, 1:01 PM
gaoh committed rKAAPANA65f7b65348f9: Merge branch 'develop' of https://phabricator.mitk.org/source/kaapana into… (authored by gaoh).
Merge branch 'develop' of https://phabricator.mitk.org/source/kaapana into…
Oct 9 2020, 12:25 PM
gaoh committed rKAAPANA839e15db3a68: Updated workflow T27735. (authored by gaoh).
Updated workflow T27735.
Oct 9 2020, 12:25 PM

Oct 6 2020

gaoh committed rKAAPANA725936e62977: updated flow mitk to run with kaapana dependencies (authored by gaoh).
updated flow mitk to run with kaapana dependencies
Oct 6 2020, 3:12 PM

Oct 1 2020

gaoh committed rKAAPANAb9ad1c948a5e: small simple scripts to send files to the platform (authored by gaoh).
small simple scripts to send files to the platform
Oct 1 2020, 2:10 PM

Sep 29 2020

gaoh committed rKAAPANA15468499f7db: Merge branch 'develop' of https://phabricator.mitk.org/source/kaapana into… (authored by gaoh).
Merge branch 'develop' of https://phabricator.mitk.org/source/kaapana into…
Sep 29 2020, 3:13 PM
gaoh committed rKAAPANAca2e361fa85f: changed LocalGetInputDataOperator: a conf with no "inputs" results in skipping… (authored by gaoh).
changed LocalGetInputDataOperator: a conf with no "inputs" results in skipping…
Sep 29 2020, 3:13 PM

Sep 14 2020

gaoh added a member for SIDT: m139l.
Sep 14 2020, 4:40 PM
gaoh closed T27110: [MITKDoc] Revise Command Line Tool/ Automatisation Plugin Documentation as Resolved.
Sep 14 2020, 3:32 PM · Cleared, MITK (2020)
gaoh committed rMITKc4b6bb115cd1: T27110 Revice Command Line Tool. (authored by gaoh).
T27110 Revice Command Line Tool.
Sep 14 2020, 3:28 PM
gaoh committed rMITK032e29703e98: T27110 Revice Command Line Tool: (authored by gaoh).
T27110 Revice Command Line Tool:
Sep 14 2020, 3:28 PM
gaoh committed rMITK0fdef86d49b2: update plugin name cmdlinemodules (authored by gaoh).
update plugin name cmdlinemodules
Sep 14 2020, 3:28 PM
gaoh committed rMITKe22741af90b4: Merge branch 'develop' into feature/T27110ReviseCommandLineTool (authored by gaoh).
Merge branch 'develop' into feature/T27110ReviseCommandLineTool
Sep 14 2020, 3:28 PM
gaoh committed rMITKcb64d430b5fa: Merge branch 'develop' into feature/T27110ReviseCommandLineTool (authored by gaoh).
Merge branch 'develop' into feature/T27110ReviseCommandLineTool
Sep 14 2020, 3:28 PM
gaoh committed rMITKc91fd01c42af: updated image statistics documentation. (authored by gaoh).
updated image statistics documentation.
Sep 14 2020, 3:28 PM
gaoh added a member for Kaapana (internal): m139l.
Sep 14 2020, 1:10 PM

Sep 3 2020

gaoh closed T27683: Dockerized MITK ubuntu 18.04 on current Master rMITKf0e722f6a65d3aba98d674120683260564ce8db0 as Resolved.
Sep 3 2020, 2:09 PM · MITK
gaoh closed T27101: [MITKDoc] Revise Logging Plugin Documentation as Resolved.
Sep 3 2020, 12:48 PM · Cleared, MITK (2020)
gaoh committed rMITK6564d6922115: Revise Logging Plugin Documentation (authored by gaoh).
Revise Logging Plugin Documentation
Sep 3 2020, 12:46 PM
gaoh committed rMITKd306ce97c808: Merge branch 'develop' of https://phabricator.mitk.org/source/mitk into develop (authored by gaoh).
Merge branch 'develop' of https://phabricator.mitk.org/source/mitk into develop
Sep 3 2020, 12:46 PM
gaoh committed rMITKa7b1d2d96181: Merge Revise Logging Plugin Documentation of https://phabricator.mitk. (authored by gaoh).
Merge Revise Logging Plugin Documentation of https://phabricator.mitk.
Sep 3 2020, 12:46 PM
gaoh committed rMITK2e2c276e7534: applied review comments (authored by gaoh).
applied review comments
Sep 3 2020, 12:46 PM
gaoh committed rMITK5a6a54a73544: Revise Logging Plugin Documentation (authored by gaoh).
Revise Logging Plugin Documentation
Sep 3 2020, 12:46 PM
gaoh closed T27097: [MITKDoc] Revise Statistics Plugin Documentation as Resolved.
Sep 3 2020, 12:18 PM · Cleared, MITK (2020)
gaoh committed rMITK40190a2ba6f6: Changed Documentation for Image Statitics: T27097 (authored by gaoh).
Changed Documentation for Image Statitics: T27097
Sep 3 2020, 12:16 PM
gaoh committed rMITK742ea8951545: removed wrong image (authored by gaoh).
removed wrong image
Sep 3 2020, 12:16 PM
gaoh committed rMITKf172a50c61ea: update image statistics plugin. (authored by gaoh).
update image statistics plugin.
Sep 3 2020, 12:16 PM
gaoh committed rMITKadb072ea0dfe: addid additonal subsections (authored by gaoh).
addid additonal subsections
Sep 3 2020, 12:16 PM
gaoh committed rMITKbbfeae7e7d7f: Merge branch 'develop' of ssh://phabricator.mitk.org:2222/source/mitk into… (authored by gaoh).
Merge branch 'develop' of ssh://phabricator.mitk.org:2222/source/mitk into…
Sep 3 2020, 12:16 PM
gaoh committed rMITK2acff4f1a6f6: Changed Documentation for Image Statitics: T27097 (authored by gaoh).
Changed Documentation for Image Statitics: T27097
Sep 3 2020, 12:16 PM

Aug 31 2020

gaoh added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

I have checked it with the current develop head under linux (Ubuntu 18) as well. I cannot reproduce the descibed error. Everything is loaded into one volume.

@gaoh May it is an outdated MITK container?

Aug 31 2020, 4:28 PM · Missing Info, DICOM, MITK
gaoh added a comment to T27110: [MITKDoc] Revise Command Line Tool/ Automatisation Plugin Documentation.

Is this the correct module? https://docs.mitk.org/2018.04/org_mitk_views_cmdlinemodules.html ? Or is there another command line tool?

Aug 31 2020, 2:17 PM · Cleared, MITK (2020)
gaoh claimed T27110: [MITKDoc] Revise Command Line Tool/ Automatisation Plugin Documentation.
Aug 31 2020, 1:28 PM · Cleared, MITK (2020)
gaoh added a revision to T27097: [MITKDoc] Revise Statistics Plugin Documentation: Unknown Object (Differential Revision).
Aug 31 2020, 1:28 PM · Cleared, MITK (2020)
gaoh claimed T27097: [MITKDoc] Revise Statistics Plugin Documentation.
Aug 31 2020, 1:20 PM · Cleared, MITK (2020)

Aug 25 2020

gaoh created T27683: Dockerized MITK ubuntu 18.04 on current Master rMITKf0e722f6a65d3aba98d674120683260564ce8db0.
Aug 25 2020, 3:41 PM · MITK

Aug 6 2020

gaoh claimed T27101: [MITKDoc] Revise Logging Plugin Documentation.
Aug 6 2020, 11:49 AM · Cleared, MITK (2020)

Aug 5 2020

gaoh added a member for SIDT: s669m.
Aug 5 2020, 10:22 AM
gaoh added a member for Kaapana (internal): s669m.
Aug 5 2020, 10:21 AM

Jul 14 2020

gaoh triaged T27559: Crash when changing parent data nodes in Data Manager as Normal priority.
Jul 14 2020, 11:33 AM · Cleared, MITK (2020)

Jul 1 2020

gaoh added a member for SIDT: e249r.
Jul 1 2020, 1:36 PM

Jun 8 2020

gaoh added a comment to T26974: [Segmentation] Region Growing 3D with 4D dataset not working.

@gaoh: Can you tell what you mean by dynamic mask?

Jun 8 2020, 2:55 PM · MITK (2020)

May 15 2020

gaoh closed T27181: MITK - DICOM Seg - not saved when started without terminal as Resolved.

File is correctly saved in the current master.

May 15 2020, 11:27 AM · Cleared, MITK (2020)
gaoh added a comment to T27181: MITK - DICOM Seg - not saved when started without terminal.

then build package target in MITK build.

@kislinsk what do you mean with this? Is it just the "normal" process, aka cmake and make in MITK-build. Or do I have to configure something additionally?
I tried the normal way and got also the "normal structure": with a bin, lib, Modules etc folder. Whereas when I download the release 18.04, the libraries are directly packed into the bin folder?

May 15 2020, 10:00 AM · Cleared, MITK (2020)

May 11 2020

gaoh added a project to T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG: Cleared.
May 11 2020, 12:44 PM · MITK, Next Milestone, Cleared
gaoh closed T27369: [Dcipher] Possibility to save Dicom segmentation objects instead of .nrrd and send those ideally directly to the platform as Resolved.

If the "base", the image, is in dcm, and not a nrrd file (which is the case in dcipher, when pulling the images from the PAC), the Segmentation can be saved as DICOM. The created file can be saved in a mounted folder and can then be directly imported via airflow into the pacs.
Directly sending data from MITK to the PACs is not recommended, because otherwise the metadata is not extracted and the segemtation cannot be triggered via kibana!

May 11 2020, 12:37 PM · MITK (2020)
gaoh updated subscribers of T27181: MITK - DICOM Seg - not saved when started without terminal.

I reproduced it with the "Installer".

[63.469] Writing image: /home/hanno/mitk/seg.dcm
Input image size: [512, 512, 7]
CodeSequence Exception: missing value in code sequence
#63.470# ERROR: An error occurred during writing the DICOM Seg: JSON Exception: file could not be read.

May 11 2020, 12:29 PM · Cleared, MITK (2020)

May 8 2020

gaoh closed T27176: MITK - DICOM Seg - load created files as Resolved.

I just tested it, it works!

May 8 2020, 11:46 AM · Missing Info, MITK (2020)

May 5 2020

gaoh removed a member for wDB: hentsch.
May 5 2020, 3:54 PM
gaoh added a member for wDB: kislinsk.
May 5 2020, 3:52 PM

Apr 8 2020

gaoh edited projects for T27176: MITK - DICOM Seg - load created files, added: MITK (2020); removed MITK.
Apr 8 2020, 10:43 AM · Missing Info, MITK (2020)

Mar 4 2020

gaoh added a comment to T27189: REST API for data storage.

The current way in the dicomweb-plugin is for GET, is to use with IHE (Invoke Image Display style).
The data is downloaded in a local temp folder (via SendWADO). And the data is then imported to the datanode via mitk::IOUtil::Load()
So basically, apart from listening to incoming IHE GET requests, it is only a DicomWeb client.
But this could be nice, to use MITK also a DicomWeb server. This Rest API could be used to build a wrapper around.
Also, it could be nice in the current implementation of loading the data to use this.

Mar 4 2020, 1:21 PM · Restricted Project, Request for Discussion, MITK

Mar 2 2020

gaoh created T27176: MITK - DICOM Seg - load created files.
Mar 2 2020, 3:24 PM · Missing Info, MITK (2020)

Feb 21 2020

gaoh committed rMITKcc90bc7e407e: update gui (authored by gaoh).
update gui
Feb 21 2020, 12:42 PM
gaoh committed rMITKed7dec720306: Removed unused Put (authored by gaoh).
Removed unused Put
Feb 21 2020, 12:42 PM
gaoh committed rMITKff5802cd361a: Update and cleanup (authored by gaoh).
Update and cleanup
Feb 21 2020, 12:42 PM
gaoh committed rMITKd6fd9672c748: corrected (authored by gaoh).
corrected
Feb 21 2020, 12:42 PM
gaoh committed rMITKf35618922a53: clean up some elements (authored by gaoh).
clean up some elements
Feb 21 2020, 12:42 PM
gaoh committed rMITK4a36b4dbce07: 'Merge' SegmentationReworkPlugin from T25025-Segmentation-Rework-MITK-Plugin (authored by gaoh).
'Merge' SegmentationReworkPlugin from T25025-Segmentation-Rework-MITK-Plugin
Feb 21 2020, 12:42 PM

Jan 9 2020

gaoh placed T24398: Dicom plugin: Retrieve does not work up for grabs.

This issue is not wDB related, but MITK related:
Query with CGET activated and then Retrieve:
Retrieve does not work, MTIK directly shows:

Jan 9 2020, 10:05 AM · MITK (2020)

Jan 8 2020

gaoh triaged T26975: 2D Fast Marching for 4D data intermediate state displays segmentation in other timesteps as Normal priority.
Jan 8 2020, 5:42 PM · Missing Info, MITK (2020)
gaoh added a project to T22395: Live wire tool deactivate leads to confirm segmentation: Restricted Project.

Still valid, but still part of the checklist!

Jan 8 2020, 5:25 PM · MITK, Restricted Project
gaoh added a project to T22391: Correction tool doesn't work in empty slice: Restricted Project.

Still not working, but still part of the checklist!

Jan 8 2020, 5:03 PM · MITK, Restricted Project
gaoh triaged T26974: [Segmentation] Region Growing 3D with 4D dataset not working as Normal priority.
Jan 8 2020, 3:51 PM · MITK (2020)
gaoh reopened T24398: Dicom plugin: Retrieve does not work as "Open".

This does still not work (Retrieve from wdB fails, when going throw the "Checkliste DICOM Browser".
I have to look into this.

Jan 8 2020, 11:45 AM · MITK (2020)
gaoh triaged T26963: Dicom Browser progressbar not showing as Low priority.
Jan 8 2020, 10:51 AM · MITK, Restricted Project
gaoh added a project to T18866: Highlighting in View Navigator is not updated: Restricted Project.

still not working, but it is part of the checklist "ViewNavigator"

Jan 8 2020, 10:15 AM · MITK, Restricted Project, Bugzilla

Dec 9 2019

gaoh added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

A two step build also works:

Dec 9 2019, 4:52 PM · Noteworthy, MITK

Dec 3 2019

gaoh renamed T26885: Open NBIA Dataset - linux mitk workbench- crashes from Open NBIA Dataset with in the linux mitk workbench- crashes to Open NBIA Dataset - linux mitk workbench- crashes.
Dec 3 2019, 2:33 PM · MITK
gaoh triaged T26885: Open NBIA Dataset - linux mitk workbench- crashes as Low priority.
Dec 3 2019, 2:32 PM · MITK

Mar 15 2019

gaoh added a comment to T19999: DICOM CGet and CMove don't work correctly.

The log entries don't tell me a lot, basically I thing for every file it writes: ERROR: setting value to 0
Just in the end, before the termination the log entries change to:

Mar 15 2019, 12:30 PM · Restricted Project, Restricted Project, MITK

Feb 15 2019

gaoh added a comment to T19999: DICOM CGet and CMove don't work correctly.

Point 1 and 2 are working.
With point 3: not all the series are downloaded: I retrieved all 5 series of a patient, but only got 2 series. Separately retrieving of each series was fine.

Feb 15 2019, 12:18 PM · Restricted Project, Restricted Project, MITK