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Jun 14 2018
Jun 14 2018
holzwart committed rMITKdf04799da50d: extend sequencing to SO2 filter + add sequence counter. (authored by holzwart).
extend sequencing to SO2 filter + add sequence counter.
Jun 13 2018
Jun 13 2018
add sequenctial image processing.
updated test class.
add vigra LS to algrothms.
removed repetitiv code @ vigra class.
holzwart committed rMITKcfdc1a80bdbc: refactoring comments & add output counter. (authored by holzwart).
refactoring comments & add output counter.
refactoring of Algorithm names(GUI).
add chrono.
add Oxygen saturation settings.
Jun 12 2018
Jun 12 2018
fixed melanin visualisation bug.
holzwart committed rMITK1d4724f1588e: add Melanin and "one endmember" to data storage; (authored by holzwart).
add Melanin and "one endmember" to data storage;
holzwart committed rMITK1b75c300eb25: New Endmember Matrix method into Base. (authored by holzwart).
New Endmember Matrix method into Base.
New wavelength implementation.
Jun 11 2018
Jun 11 2018
GUI changes.
holzwart committed rMITKddbf022e1fd6: refactoring of maptype to chromophore type enum. (authored by holzwart).
refactoring of maptype to chromophore type enum.
New EndmemberMatrix method.
add normalization to simplex alg.
Jun 7 2018
Jun 7 2018
holzwart committed rMITKf5fa77705841: updated Gui and Plugin with more algorithms. (authored by holzwart).
updated Gui and Plugin with more algorithms.
add vigra weighted LS and LS.
add Simplex to own class.
fixed smart pointer problem.
holzwart committed rMITK88d7a1358a0d: simplex algorithm structure works but result Hb==HbO2. (authored by holzwart).
simplex algorithm structure works but result Hb==HbO2.
Jun 6 2018
Jun 6 2018
start to implement Simplex algorithm.
holzwart committed rMITKfb63c1c6a713: refactoring vigra into class. Search for pointer update solution in plugin. (authored by holzwart).
refactoring vigra into class. Search for pointer update solution in plugin.
holzwart committed rMITK36cfd1731089: implement three empty classes for Simplex, Lagrange and Vigra SU algorithms. (authored by holzwart).
implement three empty classes for Simplex, Lagrange and Vigra SU algorithms.
holzwart committed rMITK3448a2827d99: minor changes to get rid of replaced code. (authored by holzwart).
minor changes to get rid of replaced code.
holzwart committed rMITKbbe9d2f37dec: NNLS works now. Need refactoring in new class. (authored by holzwart).
NNLS works now. Need refactoring in new class.
Jun 5 2018
Jun 5 2018
start implementing NNLS.
SO2 works now.
creat icon.
holzwart committed rMITK3661f302e5fa: changed name of output files and solved rendering. (authored by holzwart).
changed name of output files and solved rendering.
May 30 2018
May 30 2018
creats icon + creat no file.
try to implement S02.
May 23 2018
May 23 2018
holzwart committed rMITKa4205e33c11c: start to implement oxygen saturation module for spectral unmixing plugin. (authored by holzwart).
start to implement oxygen saturation module for spectral unmixing plugin.
minor changes.
May 22 2018
May 22 2018
fixed code because of test result.
add all solvers to test.
test working now.
gets input correctly.
fixed bugs.
avoid property calculater (error).
May 16 2018
May 16 2018
holzwart committed rMITK96fde0e54dfa: refactoring of SetAlgorithms with enum. (authored by holzwart).
refactoring of SetAlgorithms with enum.
refactoring of test.
test for spectral Unmixing Filter.
continue testing.
May 14 2018
May 14 2018
EIGEN jacobiSvd solver works now.
May 8 2018
May 8 2018
add more linear EIGEN algorithms.
holzwart committed rMITKbd034651aa0b: fixed Endmembermatrix calculation. SU works now for 2 Algorithms and dummy… (authored by holzwart).
fixed Endmembermatrix calculation. SU works now for 2 Algorithms and dummy…
holzwart committed rMITKae31f232ab06: refactoring of set algorithm with enum. (authored by holzwart).
refactoring of set algorithm with enum.
holzwart committed rMITKa1ac05de069a: add selection of Algorithms to plugin. (authored by holzwart).
add selection of Algorithms to plugin.
May 7 2018
May 7 2018
holzwart committed rMITK2c9710ed249a: Merge branch 'T24606-SpectralUnmixingFilter' of https://phabricator.mitk. (authored by holzwart).
Merge branch 'T24606-SpectralUnmixingFilter' of https://phabricator.mitk.
add test for SU filter.
holzwart committed rMITK6e5e0d7742a2: rename 'filter' as 'filter base' and add linear filter algorithms. (authored by holzwart).
rename 'filter' as 'filter base' and add linear filter algorithms.
holzwart committed rMITKa38c98bd44ac: corrected output order, include unmixing treshold. (authored by holzwart).
corrected output order, include unmixing treshold.
holzwart committed rMITKd440800af82b: uses floats now for Eigen and code refactoring. (authored by holzwart).
uses floats now for Eigen and code refactoring.
fixed dimensions bug.
holzwart committed rMITK170578d18fba: ImageAccess works now for 3x3x3. (but not for 1000x1000x3 image) (authored by holzwart).
ImageAccess works now for 3x3x3. (but not for 1000x1000x3 image)
holzwart committed rMITK13616ee63cf0: a SU "solver" works for random values. (authored by holzwart).
a SU "solver" works for random values.
add SU algorithm as method.
holzwart committed rMITKe0d3ab0c243b: start structured implementation of filter. (authored by holzwart).
start structured implementation of filter.
holzwart committed rMITKf15e6544596e: add clear wavelength button and throw if no valid data for chosen wavelength. (authored by holzwart).
add clear wavelength button and throw if no valid data for chosen wavelength.
holzwart committed rMITKde773fc6d4da: construction of Endmember Matrix for SU and cleaning code. (authored by holzwart).
construction of Endmember Matrix for SU and cleaning code.
holzwart committed rMITK04824a7bd087: now creats to identical output images like the input for hb and hb02. (authored by holzwart).
now creats to identical output images like the input for hb and hb02.
holzwart committed rMITK9c7b2d6e3431: debug of 'update' mechanism to generate output. (authored by holzwart).
debug of 'update' mechanism to generate output.
holzwart committed rMITKff402a7cb580: fixed wavelength 'bug' so adding wavelength works in Plugin. (authored by holzwart).
fixed wavelength 'bug' so adding wavelength works in Plugin.
try(:/) to fix ddwavelength bug.
holzwart committed rMITK313dbe8f616b: Add a method to add an arbitary amount of wavelengths and two chromophores to… (authored by holzwart).
Add a method to add an arbitary amount of wavelengths and two chromophores to…
empty PA Plugin.
add test for SU filter.
holzwart committed rMITKa5252eb065e4: rename 'filter' as 'filter base' and add linear filter algorithms. (authored by holzwart).
rename 'filter' as 'filter base' and add linear filter algorithms.
holzwart committed rMITKcf0436a50174: corrected output order, include unmixing treshold. (authored by holzwart).
corrected output order, include unmixing treshold.
May 4 2018
May 4 2018
holzwart committed rMITK0bdb171416db: uses floats now for Eigen and code refactoring. (authored by holzwart).
uses floats now for Eigen and code refactoring.
holzwart committed rMITK0a41a630fc5f: ImageAccess works now for 3x3x3. (but not for 1000x1000x3 image) (authored by holzwart).
ImageAccess works now for 3x3x3. (but not for 1000x1000x3 image)
fixed dimensions bug.
holzwart committed rMITK97408a11b2e5: a SU "solver" works for random values. (authored by holzwart).
a SU "solver" works for random values.
holzwart committed rMITKda652dbf0180: start structured implementation of filter. (authored by holzwart).
start structured implementation of filter.
holzwart committed rMITK3754d54d1747: add clear wavelength button and throw if no valid data for chosen wavelength. (authored by holzwart).
add clear wavelength button and throw if no valid data for chosen wavelength.
add SU algorithm as method.
Apr 25 2018
Apr 25 2018
holzwart committed rMITKf51752187a69: construction of Endmember Matrix for SU and cleaning code. (authored by holzwart).
construction of Endmember Matrix for SU and cleaning code.
holzwart committed rMITKb243993baa2f: now creats to identical output images like the input for hb and hb02. (authored by holzwart).
now creats to identical output images like the input for hb and hb02.
holzwart committed rMITK9e076342469a: debug of 'update' mechanism to generate output. (authored by holzwart).
debug of 'update' mechanism to generate output.
holzwart committed rMITK88d8b09a58e6: fixed wavelength 'bug' so adding wavelength works in Plugin. (authored by holzwart).
fixed wavelength 'bug' so adding wavelength works in Plugin.
try(:/) to fix ddwavelength bug.
Apr 23 2018
Apr 23 2018
holzwart committed rMITK301469ea00f9: Add a method to add an arbitary amount of wavelengths and two chromophores to… (authored by holzwart).
Add a method to add an arbitary amount of wavelengths and two chromophores to…
empty PA Plugin.
Apr 13 2018
Apr 13 2018
holzwart committed rMITKa8692148c4bd: Photoacoustics: outsource util algorithms (authored by holzwart).
Photoacoustics: outsource util algorithms
merged into master
Add new colormaps for MITK
add test for "empty" imgage.
holzwart committed rMITKbd7b595ce5a5: rename PhotoacousticImage to PhotoacousticFilterService. (authored by holzwart).
rename PhotoacousticImage to PhotoacousticFilterService.
holzwart committed rMITK9ab4e26c10f9: Merge branch 'T24610-NewColormaps' of https://phabricator.mitk.org/source/mitk… (authored by holzwart).
Merge branch 'T24610-NewColormaps' of https://phabricator.mitk.org/source/mitk…
holzwart committed rMITK8ebbd2df9bb2: add newline at end of file AND remove two empty lines at end of plasma cmap. (authored by holzwart).
add newline at end of file AND remove two empty lines at end of plasma cmap.
Add new colormaps for MITK
Apr 12 2018
Apr 12 2018
Apr 11 2018
Apr 11 2018
holzwart committed rMITK2f2b1667ca0d: add git link for raw data. Next step: push to master? Friday (authored by holzwart).
add git link for raw data. Next step: push to master? Friday
holzwart committed rMITKd83e7f1428d8: add Magma to Colormaps and test all successfully with test image. (authored by holzwart).
add Magma to Colormaps and test all successfully with test image.
holzwart committed rMITKf8dcdf66f6e1: add Inferno and Viridis Table. Next step: creat nrrd gray scale test image (authored by holzwart).
add Inferno and Viridis Table. Next step: creat nrrd gray scale test image
holzwart committed rMITK3b5781261a10: implement Plasma colormap. First convert python map (0-1) to c++ map (0-255)… (authored by holzwart).
implement Plasma colormap. First convert python map (0-1) to c++ map (0-255)…
holzwart committed rMITK2085b747fb49: add HotIron colormap again with new name Plasma. to do now: change colormap… (authored by holzwart).
add HotIron colormap again with new name Plasma. to do now: change colormap…