Diffusion MITK 1208cff106b4

Review: T22946 - Semantic relations for Controllpoint-Lesion-InformationType…
1208cff106b4
Actions

Tags

None

Referenced Files

None

Subscribers

None

Description

Review: T22946 - Semantic relations for Controllpoint-Lesion-InformationType triple

Summary:
Add semantic relations module, add semantic relations test project (with IOUtils_reader_filter merged and VectorProperty modified).

Feature list (merged branches) can be found in T22946:

new selection concept included
lesion tree included
hierarchical header included
patient table view (with thumbnails) included

Test Plan: unit test included

Reviewers: floca, O1 MITK Core

Reviewed By: floca, O1 MITK Core

Maniphest Tasks: T22946

Differential Revision: https://phabricator.mitk.org/D173

Details

Provenance

kalali	Authored on Feb 8 2019, 6:03 PM
kalali	Pushed on Feb 8 2019, 6:41 PM

Reviewer

O1: MITK Reviewer Group I

Differential Revision

Restricted Differential Revision

Parents

rMITK978ecb0a6153: Fix GCC errors in plugin
rMITK42d15fe91ec2: Merge branch 'T25785-resetPlanarFigureWithNewImage'

Branches

Unknown

Tags

Unknown

Event Timeline

kalali committed rMITK1208cff106b4: Review: T22946 - Semantic relations for Controllpoint-Lesion-InformationType… (authored by kalali).Feb 8 2019, 6:41 PM

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

978ecb0a6153 Fix GCC errors in plugin
Author
kalali
Browse Repository
No Builds
No Audits
550e9d28fa27 Fix GCC errors in UI module
Author
kalali
Browse Repository
No Builds
No Audits
0e8d7afb12f6 Fix GCC errors in module
Author
kalali
Browse Repository
No Builds
No Audits
ac5e897c7ec4 Modify module according to test results
Author
kalali
Browse Repository
No Builds
No Audits
e8825bf37fae Merge branch 'T25991-Semantic-relations-test-driver' into T22946-Integration…
Author
kalali
Browse Repository
No Builds
No Audits
95ef7a7dd920 Modify and extend test class
Author
kalali
Browse Repository
No Builds
No Audits
48abafb5c2be Initialize DICOM related properties in Label constructor
Author
kislinsk
Browse Repository
No Builds
No Audits
cbc920082a63 Fix static initialization
Author
kislinsk
Browse Repository
No Builds
No Audits
f1713ed66e0a Remove namespace; use function to generate a new lesion class
Author
kalali
Browse Repository
No Builds
No Audits
3eab29749a7e Apply changes that have been overlooked
Author
kalali
Browse Repository
No Builds
No Audits
c94ea7ea46ed Merge branch 'T22946-Integration-alpha' into T22946-Integration-beta
Author
kalali
Browse Repository
No Builds
No Audits
262b8f6d36e3 Review: T22946 - Semantic relations for Controllpoint-Lesion-InformationType…
Author
kalali
Browse Repository
No Builds
No Audits
ab0f12a2c1ab Include suggestions from D173
Author
kalali
Browse Repository
No Builds
No Audits
d80201324f7c Some cleanup
Author
kalali
Browse Repository
No Builds
No Audits
69e473f3e847 Remove obsolete functions
Author
kalali
Browse Repository
No Builds
No Audits
b4bc15245059 Merge branch 'T25909-Semantic-relations-split-classes' into T22946-Integration…
Author
kalali
Browse Repository
No Builds
No Audits
b2d8b879185f Merge branch 'T25533-Remove-data-storage-from-semantic-relations' into T22946…
Author
kalali
Browse Repository
No Builds
No Audits
0b1e5a6cf4b2 Use new classes in the semantic relations plugin
Author
kalali
Browse Repository
No Builds
No Audits
75a752ed12bb Create abstract action for semantic relations and use new integration class for…
Author
kalali
Browse Repository
No Builds
No Audits
401966487da8 Add abstract action for semantic relations actions
Author
kalali
Browse Repository
No Builds
No Audits
1c8520aaeb25 Use new classes in UI module
Author
kalali
Browse Repository
No Builds
No Audits
a37ed836d0d9 Use new classes
Author
kalali
Browse Repository
No Builds
No Audits
9d4ffe0e1c7f Create data storage access class for semantic relations
Author
kalali
Browse Repository
No Builds
No Audits
7e2ba0a55066 Extend inference functions
Author
kalali
Browse Repository
No Builds
No Audits
4888b366f612 Move functions to relation storage and refactor relation storage
Author
kalali
Browse Repository
No Builds
No Audits
3c650d345dd1 Create integration class for information manipulation - no data storage needed
Author
kalali
Browse Repository
No Builds
No Audits
56b814300f20 Create inference namespace for information retrieval - no data storage needed
Author
kalali
Browse Repository
No Builds
No Audits
ba9c6c9064a6 Replace MITK_INFO with MITK_DEBUG
Author
kalali
Browse Repository
No Builds
No Audits
ca51077c62de Use type definitions from SemanticTypes
Author
kalali
Browse Repository
No Builds
No Audits
e0b13f7d0f32 Make relation storage a namespace
Author
kalali
Browse Repository
No Builds
No Audits
b34e2e2da9f0 Refactor semantic relations context menu actions
Author
kalali
Browse Repository
No Builds
No Audits
21e12c852655 Clean up namespace
Author
kalali
Browse Repository
No Builds
No Audits
09f9cd7807c0 Merge branch 'T22946-Integration-alpha' into T22946-Integration-beta
Author
kalali
Browse Repository
No Builds
No Audits
45c5e13227d6 Add registration ontology module
Author
kalali
Browse Repository
No Builds
No Audits
d6994ca57373 Add action to the lesion widget for lesion propagation
Author
kalali
Browse Repository
No Builds
No Audits
aa499d618868 Some refactoring
Author
kalali
Browse Repository
No Builds
No Audits
54a4bbff165b Merge branch 'T25533-Remove-data-storage' into T22946-Integration-alpha
Author
kalali
Browse Repository
No Builds
No Audits
c755b4692f56 Clean namespace
Author
kalali
Browse Repository
No Builds
No Audits
8ed8ea44f6d8 Remove data storage from relation storage; use weak pointer
Author
kalali
Browse Repository
No Builds
No Audits
79867ec5da6d Initialize semantic relations view on activation, if data exists
Author
kalali
Browse Repository
No Builds
No Audits
52023c609768 Some renaming, clean code
Author
kalali
Browse Repository
No Builds
No Audits
5bd0eb94bd39 Remove some 'else'
Author
kalali
Browse Repository
No Builds
No Audits
97248ed76c9b Set data node selection presence for lesion widget
Author
kalali
Browse Repository
No Builds
No Audits
c9e67f92737c Remove namespace, remove unnecessary include and class member
Author
kalali
Browse Repository
No Builds
No Audits
9629eae93f2c Merge branch 'T25503-Standard-date-type' into T22946-Integration-alpha
Author
kalali
Browse Repository
No Builds
No Audits
92b3de489788 Simplify the way pixmaps and lesion presences are computed
Author
kalali
Browse Repository
No Builds
No Audits
4d75682966f7 Use boost gregorian date for control points
Author
kalali
Browse Repository
No Builds
No Audits
afc1f93cc56b Add item delegate to center pixmap; wip as it changes the background role…
Author
kalali
Browse Repository
No Builds
No Audits
de0af61b0134 Fix time distance computation
Author
kalali
Browse Repository
No Builds
No Audits
6a995803beb0 Set a name for a new examination period and display it in the multi-header.
Author
kalali
Browse Repository
No Builds
No Audits

Changes (122)
Show All Changes

Very Large Commit

This commit is very large. Load each file individually.

Path

Size

Packages

CMakeExternals/

MatchPoint.cmake

O1: MITK Reviewer Group I

Modules/

Core/

src/

DataManagement/

mitkVectorProperty.cpp

O1: MITK Reviewer Group I

ModuleList.cmake

QtWidgets/

O3: MITK Reviewer Group II

include/

QmitkDnDDataNodeWidget.h

O3: MITK Reviewer Group II

src/

QmitkDnDDataNodeWidget.cpp

O3: MITK Reviewer Group II

RegistrationOntology

mitkLesionPropagation.h

mitkLesionPropagation.cpp

SemanticRelations

mitkSemanticRelationsTest.cpp

mitkSemanticRelationsTestHelper.cpp

mitkSemanticRelationsTestHelper.h

mitkControlPointManager.h

mitkDICOMHelper.h

mitkISemanticRelationsObservable.h

mitkISemanticRelationsObserver.h

mitkLesionData.h

mitkLesionManager.h

mitkNodePredicates.h

mitkRelationStorage.h

mitkSemanticRelationException.h

mitkSemanticRelationsDataStorageAccess.h

mitkSemanticRelationsInference.h

mitkSemanticRelationsIntegration.h

mitkSemanticTypes.h

mitkUIDGeneratorBoost.h

mitkControlPointManager.cpp

mitkDICOMHelper.cpp

mitkLesionData.cpp

mitkLesionManager.cpp

mitkNodePredicates.cpp

mitkRelationStorage.cpp

mitkSemanticRelationsDataStorageAccess.cpp

mitkSemanticRelationsInference.cpp

mitkSemanticRelationsIntegration.cpp

mitkUIDGeneratorBoost.cpp

SemanticRelationsUI

QmitkAbstractSemanticRelationsStorageInspector.h

QmitkAbstractSemanticRelationsStorageModel.h

QmitkControlPointDialog.h

QmitkLesionTextDialog.h

QmitkLesionTreeItem.h

QmitkLesionTreeModel.h

QmitkPatientInfoWidget.h

QmitkPatientTableHeaderView.h

QmitkPatientTableInspector.h

QmitkPatientTableModel.h

QmitkSemanticRelationsUIHelper.h

QmitkTableItemThumbnailDelegate.h

mitkModuleActivator.h

QmitkAbstractSemanticRelationsStorageInspector.cpp

QmitkAbstractSemanticRelationsStorageModel.cpp

QmitkControlPointDialog.cpp

QmitkLesionTextDialog.cpp

QmitkLesionTreeItem.cpp

QmitkLesionTreeModel.cpp

QmitkPatientInfoWidget.cpp

QmitkPatientInfoWidgetControls.ui

QmitkPatientTableHeaderView.cpp

QmitkPatientTableInspector.cpp

QmitkPatientTableInspector.ui

QmitkPatientTableModel.cpp

QmitkSemanticRelationsUIHelper.cpp

QmitkTableItemThumbnailDelegate.cpp

mitkModuleActivator.cpp

Plugins/

PluginList.cmake

org.mitk.gui.qt.application/

O1: MITK Reviewer Group I

src/

QmitkDataNodeColorMapAction.cpp

O1: MITK Reviewer Group I

QmitkDataNodeComponentAction.cpp

O1: MITK Reviewer Group I

QmitkDataNodeOpenInAction.cpp

O1: MITK Reviewer Group I

QmitkDataNodeOpenInAction.h

O1: MITK Reviewer Group I

org.mitk.gui.qt.common/

src/

QmitkNodeSelectionDialog.cpp

O1: MITK Reviewer Group I

QmitkNodeSelectionDialog.h

O1: MITK Reviewer Group I

org.mitk.gui.qt.semanticrelations

manifest_headers.cmake

SemanticRelations_48.png

QmitkAbstractSemanticRelationsAction.cpp

QmitkAbstractSemanticRelationsAction.h

QmitkDataNodeAddToSemanticRelationsAction.cpp

QmitkDataNodeAddToSemanticRelationsAction.h

QmitkDataNodeRemoveFromSemanticRelationsAction.cpp

QmitkDataNodeRemoveFromSemanticRelationsAction.h

QmitkDataNodeSetControlPointAction.cpp

QmitkDataNodeSetControlPointAction.h

QmitkDataNodeSetInformationTypeAction.cpp

QmitkDataNodeSetInformationTypeAction.h

QmitkDataNodeUnlinkFromLesionAction.cpp

QmitkDataNodeUnlinkFromLesionAction.h

QmitkLesionInfoWidget.cpp

QmitkLesionInfoWidget.h

QmitkLesionInfoWidgetControls.ui

QmitkSemanticRelationsContextMenu.cpp

QmitkSemanticRelationsContextMenu.h

QmitkSemanticRelationsControls.ui

QmitkSemanticRelationsNodeSelectionDialog.cpp

QmitkSemanticRelationsNodeSelectionDialog.h

QmitkSemanticRelationsView.cpp

QmitkSemanticRelationsView.h

mitkPluginActivator.cpp

mitkPluginActivator.h

rMITK1208cff106b4

CMakeExternals/MatchPoint.cmake

Modules/Core/src/DataManagement/mitkVectorProperty.cpp

Modules/ModuleList.cmake

Modules/QtWidgets/files.cmake

Modules/QtWidgets/include/QmitkDnDDataNodeWidget.h

Modules/QtWidgets/src/QmitkDnDDataNodeWidget.cpp

Modules/RegistrationOntology/CMakeLists.txt

Modules/RegistrationOntology/files.cmake

Modules/RegistrationOntology/include/mitkLesionPropagation.h

Modules/RegistrationOntology/src/mitkLesionPropagation.cpp

Modules/SemanticRelations/CMakeLists.txt

Modules/SemanticRelations/Test/CMakeLists.txt

Modules/SemanticRelations/Test/files.cmake

Modules/SemanticRelations/Test/mitkSemanticRelationsTest.cpp

Modules/SemanticRelations/Test/mitkSemanticRelationsTestHelper.cpp

Modules/SemanticRelations/Test/mitkSemanticRelationsTestHelper.h

Modules/SemanticRelations/files.cmake

Modules/SemanticRelations/include/mitkControlPointManager.h

Modules/SemanticRelations/include/mitkDICOMHelper.h

Modules/SemanticRelations/include/mitkISemanticRelationsObservable.h

Modules/SemanticRelations/include/mitkISemanticRelationsObserver.h

Modules/SemanticRelations/include/mitkLesionData.h

Modules/SemanticRelations/include/mitkLesionManager.h

Modules/SemanticRelations/include/mitkNodePredicates.h

Modules/SemanticRelations/include/mitkRelationStorage.h

Modules/SemanticRelations/include/mitkSemanticRelationException.h

Modules/SemanticRelations/include/mitkSemanticRelationsDataStorageAccess.h

Modules/SemanticRelations/include/mitkSemanticRelationsInference.h

Modules/SemanticRelations/include/mitkSemanticRelationsIntegration.h

Modules/SemanticRelations/include/mitkSemanticTypes.h

Modules/SemanticRelations/include/mitkUIDGeneratorBoost.h

Modules/SemanticRelations/src/mitkControlPointManager.cpp

Modules/SemanticRelations/src/mitkDICOMHelper.cpp

Modules/SemanticRelations/src/mitkLesionData.cpp

Modules/SemanticRelations/src/mitkLesionManager.cpp

Modules/SemanticRelations/src/mitkNodePredicates.cpp

Modules/SemanticRelations/src/mitkRelationStorage.cpp

Modules/SemanticRelations/src/mitkSemanticRelationsDataStorageAccess.cpp

Modules/SemanticRelations/src/mitkSemanticRelationsInference.cpp

Modules/SemanticRelations/src/mitkSemanticRelationsIntegration.cpp

Modules/SemanticRelations/src/mitkUIDGeneratorBoost.cpp

Modules/SemanticRelationsUI/CMakeLists.txt

Modules/SemanticRelationsUI/files.cmake

Modules/SemanticRelationsUI/include/QmitkAbstractSemanticRelationsStorageInspector.h

Modules/SemanticRelationsUI/include/QmitkAbstractSemanticRelationsStorageModel.h

Modules/SemanticRelationsUI/include/QmitkControlPointDialog.h

Modules/SemanticRelationsUI/include/QmitkLesionTextDialog.h

Modules/SemanticRelationsUI/include/QmitkLesionTreeItem.h

Modules/SemanticRelationsUI/include/QmitkLesionTreeModel.h

Modules/SemanticRelationsUI/include/QmitkPatientInfoWidget.h

Modules/SemanticRelationsUI/include/QmitkPatientTableHeaderView.h

Modules/SemanticRelationsUI/include/QmitkPatientTableInspector.h

Modules/SemanticRelationsUI/include/QmitkPatientTableModel.h

Modules/SemanticRelationsUI/include/QmitkSemanticRelationsUIHelper.h

Modules/SemanticRelationsUI/include/QmitkTableItemThumbnailDelegate.h

Modules/SemanticRelationsUI/include/mitkModuleActivator.h

Modules/SemanticRelationsUI/src/QmitkAbstractSemanticRelationsStorageInspector.cpp

Modules/SemanticRelationsUI/src/QmitkAbstractSemanticRelationsStorageModel.cpp

Modules/SemanticRelationsUI/src/QmitkControlPointDialog.cpp

Modules/SemanticRelationsUI/src/QmitkLesionTextDialog.cpp

Modules/SemanticRelationsUI/src/QmitkLesionTreeItem.cpp

Modules/SemanticRelationsUI/src/QmitkLesionTreeModel.cpp

Modules/SemanticRelationsUI/src/QmitkPatientInfoWidget.cpp

Modules/SemanticRelationsUI/src/QmitkPatientInfoWidgetControls.ui

Modules/SemanticRelationsUI/src/QmitkPatientTableHeaderView.cpp

Modules/SemanticRelationsUI/src/QmitkPatientTableInspector.cpp

Modules/SemanticRelationsUI/src/QmitkPatientTableInspector.ui

Modules/SemanticRelationsUI/src/QmitkPatientTableModel.cpp

Modules/SemanticRelationsUI/src/QmitkSemanticRelationsUIHelper.cpp

Modules/SemanticRelationsUI/src/QmitkTableItemThumbnailDelegate.cpp

Modules/SemanticRelationsUI/src/mitkModuleActivator.cpp

Plugins/PluginList.cmake

Plugins/org.mitk.gui.qt.application/files.cmake

Plugins/org.mitk.gui.qt.application/src/QmitkDataNodeColorMapAction.cpp

Plugins/org.mitk.gui.qt.application/src/QmitkDataNodeComponentAction.cpp

Plugins/org.mitk.gui.qt.application/src/QmitkDataNodeOpenInAction.cpp

Plugins/org.mitk.gui.qt.application/src/QmitkDataNodeOpenInAction.h

Plugins/org.mitk.gui.qt.common/src/QmitkNodeSelectionDialog.cpp

Plugins/org.mitk.gui.qt.common/src/QmitkNodeSelectionDialog.h

Plugins/org.mitk.gui.qt.semanticrelations/CMakeLists.txt

Plugins/org.mitk.gui.qt.semanticrelations/files.cmake

Plugins/org.mitk.gui.qt.semanticrelations/manifest_headers.cmake

Plugins/org.mitk.gui.qt.semanticrelations/plugin.xml

Plugins/org.mitk.gui.qt.semanticrelations/resources/SemanticRelations_48.png

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkAbstractSemanticRelationsAction.cpp

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkAbstractSemanticRelationsAction.h

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkDataNodeAddToSemanticRelationsAction.cpp

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkDataNodeAddToSemanticRelationsAction.h

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkDataNodeRemoveFromSemanticRelationsAction.cpp

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkDataNodeRemoveFromSemanticRelationsAction.h

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkDataNodeSetControlPointAction.cpp

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkDataNodeSetControlPointAction.h

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkDataNodeSetInformationTypeAction.cpp

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkDataNodeSetInformationTypeAction.h

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkDataNodeUnlinkFromLesionAction.cpp

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkDataNodeUnlinkFromLesionAction.h

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkLesionInfoWidget.cpp

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkLesionInfoWidget.h

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkLesionInfoWidgetControls.ui

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkSemanticRelationsContextMenu.cpp

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkSemanticRelationsContextMenu.h

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkSemanticRelationsControls.ui

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkSemanticRelationsNodeSelectionDialog.cpp

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkSemanticRelationsNodeSelectionDialog.h

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkSemanticRelationsView.cpp

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/QmitkSemanticRelationsView.h

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.semanticrelations/src/internal/mitkPluginActivator.h