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kalali (Amir Kalali)
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User Since
Aug 1 2016, 12:10 PM (132 w, 5 d)

Recent Activity

Wed, Feb 13

kalali committed rMITKe31dfbdb56da: Fix wrong lesion presence mapping (authored by kalali).
Fix wrong lesion presence mapping
Wed, Feb 13, 3:48 PM
kalali committed rMITK4ee1f95d1633: Add try-catch for exception handling (authored by kalali).
Add try-catch for exception handling
Wed, Feb 13, 3:47 PM
kalali committed rMITK23394e21161d: Refactor warning message box (authored by kalali).
Refactor warning message box
Wed, Feb 13, 3:47 PM
kalali committed rMITKb7e8e10ffe4b: Change DICOM tag property name retrieval (authored by kalali).
Change DICOM tag property name retrieval
Wed, Feb 13, 3:47 PM
kalali added a project to T24810: Display interaction synchronization with world coordinates: Restricted Project.
Wed, Feb 13, 2:22 PM · Restricted Project, MITK
kalali added a project to T24672: Create decoration manager for render windows widgets: Restricted Project.
Wed, Feb 13, 2:22 PM · Restricted Project, MITK
kalali added a project to T24161: Common interface for Custom-/Std-Multi widget (editor): Restricted Project.
Wed, Feb 13, 2:22 PM · Restricted Project, MITK
kalali added a project to T24216: Synchronization of individual render windows: camera position: Restricted Project.
Wed, Feb 13, 2:22 PM · Restricted Project, MITK
kalali placed T25604: New concept for switching between different render windows up for grabs.
Wed, Feb 13, 2:20 PM · Restricted Project, MITK
kalali placed T25601: Modernize render window manager up for grabs.
Wed, Feb 13, 2:20 PM · Restricted Project, MITK
kalali placed T24810: Display interaction synchronization with world coordinates up for grabs.
Wed, Feb 13, 2:19 PM · Restricted Project, MITK
kalali placed T24672: Create decoration manager for render windows widgets up for grabs.
Wed, Feb 13, 2:19 PM · Restricted Project, MITK
kalali placed T24161: Common interface for Custom-/Std-Multi widget (editor) up for grabs.
Wed, Feb 13, 2:18 PM · Restricted Project, MITK
kalali placed T24216: Synchronization of individual render windows: camera position up for grabs.
Wed, Feb 13, 2:18 PM · Restricted Project, MITK

Mon, Feb 11

kalali added a project to T25483: Apply level window to multiple selected images: Noteworthy.
NOTE: API change: RecaluclateLevelWindowForSelectedComponent was renamed to RecalculateLevelWindowForSelectedComponent
Mon, Feb 11, 7:12 PM · Noteworthy, Restricted Project, MITK
kalali committed rMITK1be6087d176b: Merge branch 'T22946-Integration-beta' (authored by kalali).
Merge branch 'T22946-Integration-beta'
Mon, Feb 11, 10:19 AM
kalali committed rMITK18312b7ec60c: Remove RegistrationOntology module (authored by kalali).
Remove RegistrationOntology module
Mon, Feb 11, 10:18 AM

Fri, Feb 8

kalali committed rMITK1208cff106b4: Review: T22946 - Semantic relations for Controllpoint-Lesion-InformationType… (authored by kalali).
Review: T22946 - Semantic relations for Controllpoint-Lesion-InformationType…
Fri, Feb 8, 6:42 PM
kalali committed rMITK978ecb0a6153: Fix GCC errors in plugin (authored by kalali).
Fix GCC errors in plugin
Fri, Feb 8, 6:05 PM
kalali committed rMITK550e9d28fa27: Fix GCC errors in UI module (authored by kalali).
Fix GCC errors in UI module
Fri, Feb 8, 6:05 PM
kalali committed rMITK0e8d7afb12f6: Fix GCC errors in module (authored by kalali).
Fix GCC errors in module
Fri, Feb 8, 6:05 PM
kalali committed rMITKac5e897c7ec4: Modify module according to test results (authored by kalali).
Modify module according to test results
Fri, Feb 8, 4:20 PM
kalali committed rMITKe8825bf37fae: Merge branch 'T25991-Semantic-relations-test-driver' into T22946-Integration… (authored by kalali).
Merge branch 'T25991-Semantic-relations-test-driver' into T22946-Integration…
Fri, Feb 8, 4:20 PM
kalali committed rMITK48abafb5c2be: Initialize DICOM related properties in Label constructor (authored by kislinsk).
Initialize DICOM related properties in Label constructor
Fri, Feb 8, 4:06 PM
kalali committed rMITKcbc920082a63: Fix static initialization (authored by kislinsk).
Fix static initialization
Fri, Feb 8, 4:06 PM
kalali committed rMITK95ef7a7dd920: Modify and extend test class (authored by kalali).
Modify and extend test class
Fri, Feb 8, 4:06 PM
kalali committed rMITK3eab29749a7e: Apply changes that have been overlooked (authored by kalali).
Apply changes that have been overlooked
Fri, Feb 8, 4:06 PM
kalali committed rMITKf1713ed66e0a: Remove namespace; use function to generate a new lesion class (authored by kalali).
Remove namespace; use function to generate a new lesion class
Fri, Feb 8, 4:06 PM

Mon, Feb 4

kalali committed rMITKc94ea7ea46ed: Merge branch 'T22946-Integration-alpha' into T22946-Integration-beta (authored by kalali).
Merge branch 'T22946-Integration-alpha' into T22946-Integration-beta
Mon, Feb 4, 11:58 AM
kalali committed rMITK262b8f6d36e3: Review: T22946 - Semantic relations for Controllpoint-Lesion-InformationType… (authored by kalali).
Review: T22946 - Semantic relations for Controllpoint-Lesion-InformationType…
Mon, Feb 4, 11:52 AM
kalali committed rMITKab0f12a2c1ab: Include suggestions from D173 (authored by kalali).
Include suggestions from D173
Mon, Feb 4, 11:52 AM

Fri, Feb 1

kalali committed rMITKb42442f558d6: Merge branch 'T25977-Shortcuts-for-multilabel-segmentation' (authored by kalali).
Merge branch 'T25977-Shortcuts-for-multilabel-segmentation'
Fri, Feb 1, 4:47 PM
kalali committed rMITK58a05c026f01: Fix GCC error (authored by kalali).
Fix GCC error
Fri, Feb 1, 4:40 PM
kalali updated the task description for T25747: Things I came across when correcting fully automatic segmentations.
Fri, Feb 1, 4:12 PM · MITK
kalali closed T25977: Shortcuts to simplify the segmentation process, a subtask of T25747: Things I came across when correcting fully automatic segmentations, as Resolved.
Fri, Feb 1, 4:02 PM · MITK
kalali closed T25977: Shortcuts to simplify the segmentation process as Resolved.
Fri, Feb 1, 4:01 PM · Restricted Project, MITK
kalali committed rMITKbde90f56ef7e: Merge branch 'T25977-Shortcuts-for-multilabel-segmentation' (authored by kalali).
Merge branch 'T25977-Shortcuts-for-multilabel-segmentation'
Fri, Feb 1, 4:01 PM
kalali added a project to T25977: Shortcuts to simplify the segmentation process: Restricted Project.
Fri, Feb 1, 4:00 PM · Restricted Project, MITK
kalali committed rMITKd7cc42499a5c: Add two shortcuts to toggle visibility and iterate active labels (authored by kalali).
Add two shortcuts to toggle visibility and iterate active labels
Fri, Feb 1, 4:00 PM
kalali added a comment to T25977: Shortcuts to simplify the segmentation process.

Pushed new branch T25977-Shortcuts-for-multilabel-segmentation.

Fri, Feb 1, 4:00 PM · Restricted Project, MITK
kalali updated the task description for T25977: Shortcuts to simplify the segmentation process.
Fri, Feb 1, 3:29 PM · Restricted Project, MITK
kalali triaged T25977: Shortcuts to simplify the segmentation process as Normal priority.
Fri, Feb 1, 3:24 PM · Restricted Project, MITK

Thu, Jan 31

kalali committed rMITK88860fd9859a: Copy DICOM information from target image (new derived image) to segmentation (authored by kalali).
Copy DICOM information from target image (new derived image) to segmentation
Thu, Jan 31, 6:27 PM
kalali committed rMITKd80201324f7c: Some cleanup (authored by kalali).
Some cleanup
Thu, Jan 31, 5:51 PM
kalali committed rMITK69e473f3e847: Remove obsolete functions (authored by kalali).
Remove obsolete functions
Thu, Jan 31, 5:51 PM
kalali committed rMITKba9797597553: Lesions can now be propagated (authored by kalali).
Lesions can now be propagated
Thu, Jan 31, 5:31 PM
kalali committed rMITK815b6cc2df67: First draft of lesion propagation (authored by kalali).
First draft of lesion propagation
Thu, Jan 31, 5:31 PM
kalali triaged T25963: "Segmentation" property is rarely used as Low priority.
Thu, Jan 31, 4:50 PM · Request for Discussion, MITK
kalali updated the task description for T25947: The data manager does not show the data node name anymore.
Thu, Jan 31, 11:17 AM · MITK
kalali triaged T25947: The data manager does not show the data node name anymore as Normal priority.
Thu, Jan 31, 11:17 AM · MITK

Tue, Jan 29

kalali committed rMITKb4bc15245059: Merge branch 'T25909-Semantic-relations-split-classes' into T22946-Integration… (authored by kalali).
Merge branch 'T25909-Semantic-relations-split-classes' into T22946-Integration…
Tue, Jan 29, 6:08 PM
kalali committed rMITKb2d8b879185f: Merge branch 'T25533-Remove-data-storage-from-semantic-relations' into T22946… (authored by kalali).
Merge branch 'T25533-Remove-data-storage-from-semantic-relations' into T22946…
Tue, Jan 29, 6:08 PM
kalali committed rMITK0b1e5a6cf4b2: Use new classes in the semantic relations plugin (authored by kalali).
Use new classes in the semantic relations plugin
Tue, Jan 29, 5:59 PM
kalali committed rMITK401966487da8: Add abstract action for semantic relations actions (authored by kalali).
Add abstract action for semantic relations actions
Tue, Jan 29, 5:59 PM
kalali committed rMITK75a752ed12bb: Create abstract action for semantic relations and use new integration class for… (authored by kalali).
Create abstract action for semantic relations and use new integration class for…
Tue, Jan 29, 5:59 PM
kalali committed rMITK1c8520aaeb25: Use new classes in UI module (authored by kalali).
Use new classes in UI module
Tue, Jan 29, 5:59 PM
kalali committed rMITKa37ed836d0d9: Use new classes (authored by kalali).
Use new classes
Tue, Jan 29, 5:58 PM
kalali committed rMITK4888b366f612: Move functions to relation storage and refactor relation storage (authored by kalali).
Move functions to relation storage and refactor relation storage
Tue, Jan 29, 5:58 PM
kalali committed rMITK9d4ffe0e1c7f: Create data storage access class for semantic relations (authored by kalali).
Create data storage access class for semantic relations
Tue, Jan 29, 5:58 PM
kalali committed rMITK7e2ba0a55066: Extend inference functions (authored by kalali).
Extend inference functions
Tue, Jan 29, 5:58 PM

Fri, Jan 25

kalali committed rMITK56b814300f20: Create inference namespace for information retrieval - no data storage needed (authored by kalali).
Create inference namespace for information retrieval - no data storage needed
Fri, Jan 25, 11:08 AM
kalali committed rMITK3c650d345dd1: Create integration class for information manipulation - no data storage needed (authored by kalali).
Create integration class for information manipulation - no data storage needed
Fri, Jan 25, 11:08 AM
kalali committed rMITKba9c6c9064a6: Replace MITK_INFO with MITK_DEBUG (authored by kalali).
Replace MITK_INFO with MITK_DEBUG
Fri, Jan 25, 11:08 AM
kalali committed rMITKca51077c62de: Use type definitions from SemanticTypes (authored by kalali).
Use type definitions from SemanticTypes
Fri, Jan 25, 11:08 AM
kalali committed rMITKe0b13f7d0f32: Make relation storage a namespace (authored by kalali).
Make relation storage a namespace
Fri, Jan 25, 11:08 AM

Wed, Jan 23

kalali committed rMITKb34e2e2da9f0: Refactor semantic relations context menu actions (authored by kalali).
Refactor semantic relations context menu actions
Wed, Jan 23, 10:39 AM
kalali committed rMITK21e12c852655: Clean up namespace (authored by kalali).
Clean up namespace
Wed, Jan 23, 10:39 AM
kalali committed rMITK09f9cd7807c0: Merge branch 'T22946-Integration-alpha' into T22946-Integration-beta (authored by kalali).
Merge branch 'T22946-Integration-alpha' into T22946-Integration-beta
Wed, Jan 23, 10:38 AM

Jan 14 2019

kalali committed rMITK45c5e13227d6: Add registration ontology module (authored by kalali).
Add registration ontology module
Jan 14 2019, 4:42 PM
kalali committed rMITKd6994ca57373: Add action to the lesion widget for lesion propagation (authored by kalali).
Add action to the lesion widget for lesion propagation
Jan 14 2019, 4:42 PM
kalali committed rMITKaa499d618868: Some refactoring (authored by kalali).
Some refactoring
Jan 14 2019, 4:42 PM

Jan 10 2019

kalali committed rMITKafcc73444f66: Refactor; clean code (authored by kalali).
Refactor; clean code
Jan 10 2019, 5:48 PM
kalali committed rMITK4dd218fdeb80: Extend documentation (authored by kalali).
Extend documentation
Jan 10 2019, 5:26 PM
kalali renamed T24771: Add a concept documentation for the data storage inspectors and the overhaul of the selection concept from Add a concept documentation for the data storage inspectors and the overhaule of the selection concepts to Add a concept documentation for the data storage inspectors and the overhaul of the selection concept.
Jan 10 2019, 3:50 PM · MITK
kalali updated the task description for T24771: Add a concept documentation for the data storage inspectors and the overhaul of the selection concept.
Jan 10 2019, 3:48 PM · MITK

Jan 7 2019

kalali added a member for SIDT: wald.
Jan 7 2019, 6:29 PM
kalali added a revision to T25483: Apply level window to multiple selected images: Unknown Object (Differential Revision).
Jan 7 2019, 11:22 AM · Noteworthy, Restricted Project, MITK
kalali committed rMITK7629ab45bacf: Fix level window manager test (authored by kalali).
Fix level window manager test
Jan 7 2019, 10:41 AM

Jan 2 2019

kalali committed rMITK9335b975363b: Add comments and rearrange functions (authored by kalali).
Add comments and rearrange functions
Jan 2 2019, 6:56 PM
kalali triaged T25804: Set 'selected' property when using the new selection concept as Normal priority.
Jan 2 2019, 6:28 PM · MITK
kalali added a comment to T19449: Render window not updated on non-auto-topmost data node selection..

Just stumbled upon this. Could you clarify what you expect to happen? Has this been solved in the meantime?

Jan 2 2019, 6:01 PM · Bugzilla, MITK
kalali added a comment to T25483: Apply level window to multiple selected images.

Using the new option "Use selected images", the mitk::LevelWindowManager::SetSelectedImages-function defines a set of selected images (according to the 'selected'-property) but uses the last image of the set of selected images as the 'currentImage'.
Please note that QmitkLevelWindowWidgetContextMenu::OnUseAllGreyvaluesFromImage() and QmitkLevelWindowWidgetContextMenu::OnUseOptimizedLevelWindow() use the mitk::LevelWindowManager::GetCurrentImage()-function and will therefore adjust the level window according to the current image.

Jan 2 2019, 5:30 PM · Noteworthy, Restricted Project, MITK
kalali updated the task description for T25688: Render window manager with custom multi widget: beta version.
Jan 2 2019, 3:17 PM · Noteworthy, Restricted Project, MITK

Dec 21 2018

kalali added a comment to T25483: Apply level window to multiple selected images.

The level window can now be applied to a set of selected data nodes (if using the new option "Use selected images" in the level window slider context menu).
The 'selected' property of a data node has to be set, though. This is done e.g. in the data manager.
Using the new selection concept the selected property is currently not maintained and therefore using the new selection widgets will not allow to use selected nodes for the level window slider (see T25804).

Dec 21 2018, 4:38 PM · Noteworthy, Restricted Project, MITK
kalali committed rMITKe8ab386ebc13: Store relevant nodes to apply the newly set level window to them (authored by kalali).
Store relevant nodes to apply the newly set level window to them
Dec 21 2018, 4:36 PM
kalali closed T18200: RDF: Levelwindow only works on top layer data node as Resolved.

Using T25483 it is now possible to choose setting the level window (slider) for the selected data node.

Dec 21 2018, 3:05 PM · Bugzilla, MITK
kalali committed rMITKf43d964f344f: Refactor and clean code (authored by kalali).
Refactor and clean code
Dec 21 2018, 3:00 PM
kalali committed rMITK1a6087349c7b: Add first draft for a 'Use selected images' action in the context menu (authored by kalali).
Add first draft for a 'Use selected images' action in the context menu
Dec 21 2018, 3:00 PM
kalali committed rMITK8d0387531bca: Refactor and clean code; remove / rewrite comments, remove namespaces (authored by kalali).
Refactor and clean code; remove / rewrite comments, remove namespaces
Dec 21 2018, 3:00 PM
kalali added a comment to T25483: Apply level window to multiple selected images.

Pushed new branch T25483-Level-window-for-selected-images.

Dec 21 2018, 2:59 PM · Noteworthy, Restricted Project, MITK
kalali added a comment to T25483: Apply level window to multiple selected images.

A first draft is implemented with a single selected image and it works quite well.

Dec 21 2018, 2:59 PM · Noteworthy, Restricted Project, MITK

Dec 19 2018

kalali committed rMITK54a4bbff165b: Merge branch 'T25533-Remove-data-storage' into T22946-Integration-alpha (authored by kalali).
Merge branch 'T25533-Remove-data-storage' into T22946-Integration-alpha
Dec 19 2018, 3:08 PM
kalali committed rMITKc755b4692f56: Clean namespace (authored by kalali).
Clean namespace
Dec 19 2018, 3:06 PM
kalali committed rMITK8ed8ea44f6d8: Remove data storage from relation storage; use weak pointer (authored by kalali).
Remove data storage from relation storage; use weak pointer
Dec 19 2018, 3:06 PM

Dec 17 2018

kalali committed rMITK79867ec5da6d: Initialize semantic relations view on activation, if data exists (authored by kalali).
Initialize semantic relations view on activation, if data exists
Dec 17 2018, 3:20 PM
kalali committed rMITK52023c609768: Some renaming, clean code (authored by kalali).
Some renaming, clean code
Dec 17 2018, 3:20 PM
kalali committed rMITK5bd0eb94bd39: Remove some 'else' (authored by kalali).
Remove some 'else'
Dec 17 2018, 3:20 PM
kalali committed rMITK97248ed76c9b: Set data node selection presence for lesion widget (authored by kalali).
Set data node selection presence for lesion widget
Dec 17 2018, 3:20 PM
kalali added a comment to T25747: Things I came across when correcting fully automatic segmentations.
  1. be able to copy segmentation maps from one slice to another. Rational behind this: segmentation map for a structure of interest might be missing not only in the current but also in the neighboring (spacial and temporal) slices. The segmentation map is then likely to be similar in these slices. Being able to copy with lead to more consistent segmentation maps.
Dec 17 2018, 11:09 AM · MITK

Dec 14 2018

kalali added a comment to T25750: 100% Opacity of segmentation maps after restart of multilabel segmentation tool.

My initial thought was that I accidentally fixed a bug with the new context menu actions so looking closer into the original opacity-slider action in the old data manager might reveal the flaw that is responsible for this behavior.
Something like - not correctly setting the opacity using the opacity value from the data node when opening the context menu.

Dec 14 2018, 12:47 PM · MITK (2018-04-2)