T30171-python…
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Merge branch 'feature/T27923-ExecPythonCodeInMITK' into feature/T30171-python-wrapping-new

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a178n	Authored on Jan 22 2024, 10:02 PM
a178n	Pushed on Jan 22 2024, 10:03 PM

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rMITK36ae234b4449: Merge branch 'bugfix/T30308-HandleFlippedAxes' into develop
rMITK87efff937d49: Merge remote-tracking branch 'origin/feature/T27923-python-dev' into…

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87efff937d49 Merge remote-tracking branch 'origin/feature/T27923-python-dev' into…
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482122ad8c75 Merge develop
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af34e9eeb105 Merge branch 'develop' into feature/T27923-python-dev
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43af3a731edc fix error with ImageWriteAccessor on Ubuntu
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1e08799fb79f automatically generate swigpyrun.h
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f2c59a94e27f resolve errors after develop merge
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ddf7f6cc6f1d Merge branch 'develop' into feature/T27923-python-dev
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1319143288e1 remove QMessageBox import from python example plugin - caused build error on…
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f370ed4e3b5a Merge branch 'develop' into feature/T27923-python-dev
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cdde9d84cd46 fix error message for setting origin and spacing
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c7febbb749de Add transfer pf spacing & origin info with MITKImage to Python
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7218dcd3cb15 Merge remote-tracking branch 'origin/master' into feature/T27923-python-dev
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1e9827e94899 Merge remote-tracking branch 'origin/master' into feature/T27923-python-dev
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906c5f00f50f Code fixes for MacOS build and cleanup
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13e1046c95f6 enable debug and release for windows and change code to enable python 3.8+
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5cc18746cd30 Code refactoring changes for for-loops
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e737fb4c8cef added directories to system path to find pyMITK on Ubuntu
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a17a2f133810 get python test running on Ubuntu
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0e5a97dda734 fixed syntax errors
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840b81f19a54 Code fixes for ubuntu build.
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30f8419788c7 removed m_PythonMITKImages list which was not used
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b47a39a0bb12 added code comments for python service
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9346673104a5 removed commented code in Python service
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973257ab8509 append matchpoint to wrapped libraries list instead of creating two seperate…
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41ac62f39acf removed debug prints in CMakeLists.txt
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1a1c524430a3 Merge branch 'develop' into feature/T27923-python-dev
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c5eafd23b1cd add wrapping/swig dependency to Python service
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34774d41d6cc make MatchPoint optional when wrapping with SWIG
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245b5f42412e renamed org.mitk.gui.qt.deeplearningsegmentation to org.mitk.
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d3ae387b2d8b search for swig dlls when using python 3.8+
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893251e11bdc Merge remote-tracking branch 'origin/develop' into feature/T27923-python-dev
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10261e574b82 Merge remote-tracking branch 'origin/develop' into feature/T27923-python-dev
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f2d92386c714 Enable wrapping only if MatchPoint is enabled
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cb4a281db71a Merge remote-tracking branch 'origin/develop' into feature/T27923-python-dev
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53694d1a728d Migrate python wrapping to latest MITK developments
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6cc04726ea60 Merge branch 'develop' into feature/T27923-python-dev
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3b0b55cd05ac enable calls on mitk geometry object to get origin and spacing
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f5e3af9ac8ec updated documentation of python module
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9c37b14fdebc removed unimplemented methods
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e3b95a2aefa7 deleted qt python interface implementation and python plugin
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25d3b58325bc fixed type of spacing and origin array to transfer and automatically adapt to…
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f2a3d3ad6558 set correct origin and spacing when working with SimpleITK image in python
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a1e714dabd81 throw exceptions for unimplemented methods
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1c08e227edb9 fixed observer issue
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6718604f07d7 updated documentation for python module
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5378c848e402 updated SWIG version
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20ec6fd310da updated .gitignore to ignore some python settings and compiled files
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c5f8e7616bae updated SWIG wrapping files and CMakeLists for Wrapping
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b704450312fc deleted plugin view of deeplearning segmentation
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0bd5f2eabfa4 added example plugin for python service
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Changes (141)

Path

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.gitignore

CMake/

mitkLanguageOptions.cmake

O1: MITK Reviewer Group I

mitkSwigAddLibraryDependencies.cmake

O1: MITK Reviewer Group I

mitkSwigPrepareFiles.cmake

O1: MITK Reviewer Group I

CMakeLists.txt

O1: MITK Reviewer Group I

Documentation/

Doxygen/

3-DeveloperManual/

MITKModuleManualsList.dox

Toolkit/

ModuleManuals/

MITKModuleManualsList.dox

Examples/

Plugins/

PluginList.cmake

org.mitk.example.gui.pythonexample

CMakeLists.txt

files.cmake

manifest_headers.cmake

PythonExampleControls.ui

PythonWorker.cpp

org_mitk_example_gui_pythonexample_Activator.cpp

org_mitk_example_gui_pythonexample_Activator.h

	Examples/	Plugins/	org.mitk.example.gui.pythonexample/	src/	internal/
				Modules/	Python/

	PythonWorker.h
	mitkIPythonService.cpp

Modules/

DeepLearningSegmentation

CMakeLists.txt

DeepLearningSegmentationTool.cpp

DeepLearningSegmentationTool.h

documentation

DeveloperManual

DeepLearningSegmentation.dox

files.cmake

ModuleList.cmake

Python/

CMakeLists.txt

O3: MITK Reviewer Group II

autoload

O3: MITK Reviewer Group II

PythonService

O3: MITK Reviewer Group II

CMakeLists.txt

O3: MITK Reviewer Group II

PythonPath.h.in

O3: MITK Reviewer Group II

files.cmake

O3: MITK Reviewer Group II

mitkPythonActivator.cpp

O3: MITK Reviewer Group II

mitkPythonService.cpp

O3: MITK Reviewer Group II

mitkPythonService.h

O3: MITK Reviewer Group II

documentation/

mitkPython.dox

O3: MITK Reviewer Group II

mitkIPythonService.cpp

O3: MITK Reviewer Group II

mitkIPythonService.h

O3: MITK Reviewer Group II

test

O3: MITK Reviewer Group II

CMakeLists.txt

O3: MITK Reviewer Group II

files.cmake

O3: MITK Reviewer Group II

hello_world_project

O3: MITK Reviewer Group II

__init__.py

O3: MITK Reviewer Group II

call_hello.py

O3: MITK Reviewer Group II

call_hello_in_subfolder.py

O3: MITK Reviewer Group II

hello.py

O3: MITK Reviewer Group II

hello_subfolder

O3: MITK Reviewer Group II

__init__.py

O3: MITK Reviewer Group II

hello.py

O3: MITK Reviewer Group II

hello_to_call.py

O3: MITK Reviewer Group II

mitkPythonObserverMock.cpp

O3: MITK Reviewer Group II

mitkPythonTest.cpp

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	test/

	mitkPythonObserverMock.h
	mitkIPythonService.cpp

O3: MITK Reviewer Group II

PythonService

CMakeLists.txt

mitkPythonService.cpp

			PythonService/
	Python/	autoload/	PythonService/

PythonPath.h.in

files.cmake

mitkPythonActivator.cpp

mitkPythonService.h

QtPython

CMakeLists.txt

QmitkCtkPythonShell.cpp

QmitkCtkPythonShell.h

QmitkPythonScriptEditorHighlighter.cpp

QmitkPythonScriptEditorHighlighter.h

QmitkPythonSnippets.cpp

QmitkPythonSnippets.h

QmitkPythonSnippets.ui

QmitkPythonTextEditor.cpp

QmitkPythonTextEditor.h

QmitkPythonVariableStackTableModel.cpp

QmitkPythonVariableStackTableModel.h

QmitkPythonVariableStackTableView.cpp

QmitkPythonVariableStackTableView.h

edit-find-replace.png

edit-paste.png

media-playback-start.png

mitkPython.qrc

Plugins/

PluginList.cmake

org.mitk.deeplearningsegmentation

CMakeLists.txt

files.cmake

manifest_headers.cmake

src

internal

DeepLearningSegmentationGUI.cpp

DeepLearningSegmentationGUI.h

DeepLearningSegmentationGUI.ui

SegmentationResultHandler.cpp

SegmentationResultHandler.h

SegmentationWorker.cpp

SegmentationWorker.h

org_mitk_deeplearningsegmentation_Activator.h

org.mitk.gui.qt.python

O3: MITK Reviewer Group II

CMakeLists.txt

O3: MITK Reviewer Group II

documentation

O3: MITK Reviewer Group II

UserManual

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MitkPythonPluginView.png

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QmitkPython.dox

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files.cmake

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manifest_headers.cmake

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plugin.xml

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resources

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Python.png

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Python.qrc

O3: MITK Reviewer Group II

src

O3: MITK Reviewer Group II

internal

O3: MITK Reviewer Group II

QmitkPythonView.cpp

O3: MITK Reviewer Group II

QmitkPythonView.h

O3: MITK Reviewer Group II

mitkPluginActivator.cpp

O3: MITK Reviewer Group II

mitkPluginActivator.h

O3: MITK Reviewer Group II

	Plugins/	org.mitk.deeplearningsegmentation/	src/	internal/
			Modules/	Python/

	org_mitk_deeplearningsegmentation_Activator.cpp
	mitkIPythonService.cpp

Wrapping/

CMakeLists.txt

Common/

mitk_swig_classes.i

mitk_swig_cpp_include.i

Python/

dist/

mitkNumpyArrayConversion.cxx

rMITKbfa97bcd43b8

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Wrapping/Python/mitkNumpyArrayConversion.cxx

Merge branch 'feature/T27923-ExecPythonCodeInMITK' into feature/T30171-python…bfa97bcd43b8UnpublishedActions

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Details

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Changes (141)

rMITKbfa97bcd43b8

.gitignore

CMake/mitkLanguageOptions.cmake

CMake/mitkSwigAddLibraryDependencies.cmake

CMake/mitkSwigPrepareFiles.cmake

CMakeLists.txt

Documentation/Doxygen/3-DeveloperManual/MITKModuleManualsList.dox

Documentation/Doxygen/3-DeveloperManual/Toolkit/ModuleManuals/MITKModuleManualsList.dox

Examples/Plugins/PluginList.cmake

Examples/Plugins/org.mitk.example.gui.pythonexample/CMakeLists.txt

Examples/Plugins/org.mitk.example.gui.pythonexample/files.cmake

Examples/Plugins/org.mitk.example.gui.pythonexample/manifest_headers.cmake

Examples/Plugins/org.mitk.example.gui.pythonexample/plugin.xml

Examples/Plugins/org.mitk.example.gui.pythonexample/resources/hello.py

Examples/Plugins/org.mitk.example.gui.pythonexample/resources/icon.xpm

Examples/Plugins/org.mitk.example.gui.pythonexample/src/internal/PythonExample.cpp

Examples/Plugins/org.mitk.example.gui.pythonexample/src/internal/PythonExample.h

Examples/Plugins/org.mitk.example.gui.pythonexample/src/internal/PythonExampleControls.ui

Examples/Plugins/org.mitk.example.gui.pythonexample/src/internal/PythonWorker.cpp

Examples/Plugins/org.mitk.example.gui.pythonexample/src/internal/PythonWorker.h

Examples/Plugins/org.mitk.example.gui.pythonexample/src/internal/org_mitk_example_gui_pythonexample_Activator.cpp

Examples/Plugins/org.mitk.example.gui.pythonexample/src/internal/org_mitk_example_gui_pythonexample_Activator.h

Modules/DeepLearningSegmentation/CMakeLists.txt

Modules/DeepLearningSegmentation/DeepLearningSegmentationTool.cpp

Modules/DeepLearningSegmentation/DeepLearningSegmentationTool.h

Modules/DeepLearningSegmentation/documentation/DeveloperManual/DeepLearningSegmentation.dox

Modules/DeepLearningSegmentation/files.cmake

Modules/ModuleList.cmake

Modules/Python/CMakeLists.txt

Modules/Python/autoload

Modules/Python/autoload/PythonService

Modules/Python/autoload/PythonService/CMakeLists.txt

Modules/Python/autoload/PythonService/PythonPath.h.in

Modules/Python/autoload/PythonService/files.cmake

Modules/Python/autoload/PythonService/mitkPythonActivator.cpp

Modules/Python/autoload/PythonService/mitkPythonService.cpp

Modules/Python/autoload/PythonService/mitkPythonService.h

Modules/Python/documentation/mitkPython.dox

Modules/Python/mitkIPythonService.cpp

Modules/Python/mitkIPythonService.h

Modules/Python/test/CMakeLists.txt

Modules/Python/test/files.cmake

Modules/Python/test/hello_world_project/__init__.py

Modules/Python/test/hello_world_project/call_hello.py

Modules/Python/test/hello_world_project/call_hello_in_subfolder.py

Modules/Python/test/hello_world_project/hello.py

Modules/Python/test/hello_world_project/hello_subfolder/__init__.py

Modules/Python/test/hello_world_project/hello_subfolder/hello.py

Modules/Python/test/hello_world_project/hello_to_call.py

Modules/Python/test/mitkPythonObserverMock.cpp

Modules/Python/test/mitkPythonObserverMock.h

Modules/Python/test/mitkPythonTest.cpp

Modules/PythonService/CMakeLists.txt

Modules/PythonService/PythonPath.h.in

Modules/PythonService/files.cmake

Modules/PythonService/mitkPythonActivator.cpp

Modules/PythonService/mitkPythonService.cpp

Modules/PythonService/mitkPythonService.h

Modules/QtPython

Modules/QtPython/CMakeLists.txt

Modules/QtPython/QmitkCtkPythonShell.cpp

Modules/QtPython/QmitkCtkPythonShell.h

Modules/QtPython/QmitkPythonScriptEditorHighlighter.cpp

Modules/QtPython/QmitkPythonScriptEditorHighlighter.h

Modules/QtPython/QmitkPythonSnippets.cpp

Modules/QtPython/QmitkPythonSnippets.h

Modules/QtPython/QmitkPythonSnippets.ui

Modules/QtPython/QmitkPythonTextEditor.cpp

Modules/QtPython/QmitkPythonTextEditor.h

Modules/QtPython/QmitkPythonVariableStackTableModel.cpp

Modules/QtPython/QmitkPythonVariableStackTableModel.h

Modules/QtPython/QmitkPythonVariableStackTableView.cpp

Modules/QtPython/QmitkPythonVariableStackTableView.h

Merge branch 'feature/T27923-ExecPythonCodeInMITK' into feature/T30171-python…
bfa97bcd43b8Unpublished
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Modules/Python/test/hello_world_project/init.py

Modules/Python/test/hello_world_project/hello_subfolder/init.py