Output from building MitkDiffusion ( with help pages ) + new plugin generated with the MitkPluginGenerator:

Warning: doxygen no longer ships with the FreeSans font.
You may want to clear or change DOT_FONTNAME.
Otherwise you run the risk that the wrong font is being used for dot generated graphs.

MITK/Plugins/org.mitk.gui.qt.newplugin/documentation/UserManual/
Manual.dox:4: warning: image file icon.png is not found in IMAGE_PATH: assuming external image.
Manual.dox:5: warning: image file icon.png is not found in IMAGE_PATH: assuming external image.

MITK/Plugins/org.mitk.gui.qt.newplugin//documentation/UserManual/html/index.qhp, at line 11, column 14: Opening and ending tag mismatch.
make[3]: *** [Plugins/org.mitk.gui.qt.spatialmasking/resources/org_mitk_gui_qt_spatialmasking.qch] Error 2