Documentation shows description of "GetTimeBounds" for the method "GetBounds". This is wrong. GetTimeBounds does not exist anymore.
Solution:
Delete the following comment in BaseGeometry.h
//##Documentation //## @brief Get the time bounds (in ms) //itkGetConstReferenceMacro(TimeBounds, TimeBounds);
...and... have a look into the #ifdef DOXYGEN_SKIP. Is it necessary? What does it do?