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Maniphest T2107

Public Diffusion Module
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Authored By
fritzsck
Jun 3 2009, 3:22 PM
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Referenced Files
F222: modification_propertyDelegates.diff
Oct 12 2009, 9:18 AM
F221: ChangeRequest3.txt
Oct 12 2009, 9:18 AM
F220: modification_pixeltype.diff
Oct 12 2009, 9:14 AM
F219: ChangeRequest2.txt
Oct 12 2009, 9:13 AM
F218: modification_coreObjectFactory.diff
Oct 12 2009, 9:11 AM
F217: ChangeRequest.txt
Oct 12 2009, 9:03 AM
Subscribers
fritzsck
nolden
• vanbruggen
zelzer

Description

Combine all Diffusion Imaging related code in one public and one MBI diffusion module.

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StatusAssignedTask
 ResolvedNoneT2107 Public Diffusion Module
 ResolvedNoneT2649 Diffusion-Tensor Pixeltype
 ResolvedNoneT2648 Extending the MITK Factory Mechanism

Event Timeline

There are a very large number of changes, so older changes are hidden. Show Older Changes
fritzsck added a comment.Oct 9 2009, 7:26 PM

[SVN revision 19417]
FIX (#2107): new calculation of ASR. using doubles for GFA-calculation.

fritzsck added a comment.Oct 9 2009, 9:08 PM

[SVN revision 19418]
FIX (#2107): new properties to controll q-ball rendering

fritzsck added a comment.Oct 9 2009, 9:09 PM

[SVN revision 19419]
FIX (#2107): support for new properties to controll q-ball rendering

fritzsck added a comment.Oct 9 2009, 9:10 PM

[SVN revision 19420]
FIX (#2107): support for new properties to controll q-ball rendering

fritzsck added a comment.Oct 10 2009, 6:16 PM

[SVN revision 19421]
FIX (#2107): support for solid angle reconsideration. additional options to reconstruct raw signal and adc-profiles.

fritzsck added a comment.Oct 10 2009, 6:17 PM

[SVN revision 19422]
FIX (#2107): improved UI. support for solid angle reconsideration. additional options to reconstruct raw signal and adc-profiles.

fritzsck added a comment.Oct 10 2009, 6:31 PM

[SVN revision 19423]
FIX (#2107): initial checkin of quantification bundle

fritzsck added a comment.Oct 11 2009, 3:36 PM

[SVN revision 19424]
FIX (#2107): initial checkin of image stats bundle

fritzsck added a comment.Oct 11 2009, 4:23 PM

[SVN revision 19427]
FIX (#2107): initial working version

fritzsck added a comment.Oct 11 2009, 4:23 PM

[SVN revision 19428]
FIX (#2107): initial working version

fritzsck added a comment.Oct 11 2009, 7:32 PM

[SVN revision 19432]
FIX (#2107): small changes

fritzsck added a comment.Oct 11 2009, 7:33 PM

[SVN revision 19433]
FIX (#2107): initial checkin of tensor reconstruction bundle

fritzsck added a comment.Oct 11 2009, 7:34 PM

[SVN revision 19434]
FIX (#2107): initial checkin of tensor-image IO

fritzsck added a comment.Oct 11 2009, 7:35 PM

[SVN revision 19435]
FIX (#2107): tensor-image IO

fritzsck added a comment.Oct 11 2009, 7:35 PM

[SVN revision 19436]
FIX (#2107): cpp->txx

fritzsck added a comment.Oct 11 2009, 7:36 PM

[SVN revision 19437]
FIX (#2107): some fixes, not working yet (dwi image gets written to disk but tend estim is not able to read it)

fritzsck added a comment.Oct 12 2009, 9:03 AM

change request coreObjectFactory

ChangeRequest.txt824 BDownload

fritzsck added a comment.Oct 12 2009, 9:11 AM

modification of coreObjectFactory

modification_coreObjectFactory.diff10 KBDownload

fritzsck added a comment.Oct 12 2009, 9:13 AM

change request mitkPixelType and ImageCast

ChangeRequest2.txt846 BDownload

fritzsck added a comment.Oct 12 2009, 9:14 AM

modification of pixeltype and imagecast

modification_pixeltype.diff2 KBDownload

fritzsck added a comment.Oct 12 2009, 9:18 AM

change request for property delegates

ChangeRequest3.txt656 BDownload

fritzsck added a comment.Oct 12 2009, 9:18 AM

modification of property delegates

modification_propertyDelegates.diff983 BDownload

fritzsck added a comment.Oct 12 2009, 10:29 AM

[SVN revision 19442]
FIX (#2107): initial working version

fritzsck added a comment.Oct 12 2009, 11:33 AM

[SVN revision 19443]
FIX (#2107): improved GUI, added support for averaging redundant gradients

fritzsck added a comment.Oct 12 2009, 2:57 PM

[SVN revision 19452]
FIX (#2107): corrected setting of name properties

fritzsck added a comment.Oct 12 2009, 2:58 PM

[SVN revision 19453]
FIX (#2107): new properties for tensors and qballs

fritzsck added a comment.Oct 12 2009, 2:59 PM

[SVN revision 19454]
FIX (#2107): deleted deprecated files

fritzsck added a comment.Oct 12 2009, 3:00 PM

[SVN revision 19455]
FIX (#2107): allow init from diffusion-tensor

fritzsck added a comment.Oct 12 2009, 3:01 PM

[SVN revision 19456]
FIX (#2107): mapper now listens to "VisibleOdfs" instead of "visible" flag. Enabled Tensor visualization.

fritzsck added a comment.Oct 13 2009, 4:18 PM

[SVN revision 19464]
FIX (#2107): initial checkin of Tensor -> RGB filter

fritzsck added a comment.Oct 13 2009, 5:30 PM

[SVN revision 19469]
FIX (#2107): initial checkin of TensorMapper

fritzsck added a comment.Oct 13 2009, 7:27 PM

[SVN revision 19472]
FIX (#2107): restructuring

fritzsck added a comment.Oct 22 2009, 9:38 AM

[SVN revision 19616]
FIX (#2107): renaming

fritzsck added a comment.Nov 1 2009, 1:38 PM

[SVN revision 19812]
FIX (#2107): Enabling LoD

fritzsck added a comment.Nov 1 2009, 1:38 PM

[SVN revision 19813]
FIX (#2107): Mapping mitk::DiffusionImage

fritzsck added a comment.Nov 1 2009, 1:40 PM

[SVN revision 19814]
FIX (#2107): clean up

fritzsck added a comment.Nov 1 2009, 1:41 PM

[SVN revision 19815]
FIX (#2107): disallowing negative values in InitFromTensor()

fritzsck added a comment.Nov 1 2009, 1:44 PM

[SVN revision 19817]
FIX (#2107): now directly writes tensors

fritzsck added a comment.Nov 1 2009, 1:49 PM

[SVN revision 19818]
FIX (#2107): DiffusionImage has new interface and now inherits from mitk::Image

fritzsck added a comment.Nov 1 2009, 1:51 PM

[SVN revision 19819]
FIX (#2107): DiffusionImage has new interface and now inherits from mitk::Image. Icons added.

fritzsck added a comment.Nov 1 2009, 2:44 PM

[SVN revision 19823]
FIX (#2107): enhanced opacity of icons

fritzsck added a comment.Nov 1 2009, 3:13 PM

[SVN revision 19824]
FIX (#2107): test of factory registration mechanism

fritzsck added a comment.Nov 1 2009, 4:54 PM

[SVN revision 19826]
FIX (#2107): all views to one bundle

fritzsck added a comment.Nov 1 2009, 4:54 PM

[SVN revision 19827]
FIX (#2107): all views to one bundle

fritzsck added a comment.Nov 1 2009, 4:54 PM

[SVN revision 19828]
FIX (#2107): all views to one bundle

fritzsck added a comment.Nov 1 2009, 4:54 PM

[SVN revision 19829]
FIX (#2107): all views to one bundle

fritzsck added a comment.Nov 1 2009, 4:55 PM

[SVN revision 19830]
FIX (#2107): all views to one bundle

fritzsck added a comment.Nov 1 2009, 4:57 PM

[SVN revision 19831]
FIX (#2107): all views to one bundle

fritzsck added a comment.Nov 1 2009, 5:32 PM

[SVN revision 19834]
FIX (#2107): renaming

fritzsck added a comment.Nov 1 2009, 6:55 PM

[SVN revision 19837]
FIX (#2107): icons and boost dependency

fritzsck added a comment.Nov 11 2009, 10:58 AM

[SVN revision 20014]
FIX (#2107): added m_DisplayIndex property and changed initialization of displayed image

fritzsck added a comment.Nov 11 2009, 10:58 AM

[SVN revision 20015]
FIX (#2107): removed one call of InitializeFromVectorImage, since it was called twice

fritzsck added a comment.Nov 11 2009, 11:00 AM

[SVN revision 20016]
FIX (#2107): initial working version

fritzsck added a comment.Nov 11 2009, 11:01 AM

[SVN revision 20017]
FIX (#2107): addapted positioning according to T2401 "MPR displays pixel brightness mismatch"

fritzsck added a comment.Nov 11 2009, 11:13 AM

[SVN revision 20023]
FIX (#2107): renamed DiffusionVolumes to DiffusionImage

fritzsck added a comment.Nov 11 2009, 11:30 AM

[SVN revision 20025]
FIX (#2107): register types in QmitkNodeDescriptorManager

fritzsck added a comment.Nov 11 2009, 11:31 AM

[SVN revision 20026]
FIX (#2107): GUI enhancements

fritzsck added a comment.Nov 12 2009, 1:15 PM

[SVN revision 20076]
FIX (#2107): activate factory registration. new mapper and props for DiffusionImage.

fritzsck added a comment.Nov 12 2009, 1:16 PM

[SVN revision 20077]
FIX (#2107): new resources

fritzsck added a comment.Nov 12 2009, 1:17 PM

[SVN revision 20078]
FIX (#2107): new view, initial checkin. controls visualization of diffusion datatypes.

fritzsck added a comment.Nov 12 2009, 1:17 PM

[SVN revision 20079]
FIX (#2107): new set members

fritzsck added a comment.Nov 16 2009, 1:19 PM

[SVN revision 20177]
FIX (#2107): new folder

fritzsck added a comment.Nov 16 2009, 1:22 PM

[SVN revision 20178]
FIX (#2107): moved source files to new folder

fritzsck added a comment.Nov 16 2009, 6:54 PM

[SVN revision 20201]
FIX (#2107): deprecated

fritzsck added a comment.Nov 25 2009, 11:44 AM

[SVN revision 20515]
FIX (#2107): removed deprecated slice duplication

fritzsck added a comment.Nov 25 2009, 11:47 AM

[SVN revision 20516]
FIX (#2107): l=4 is now default

fritzsck added a comment.Nov 25 2009, 4:06 PM

[SVN revision 20543]
FIX (#2107): GUI enhancements

fritzsck added a comment.Nov 25 2009, 6:49 PM

[SVN revision 20564]
FIX (#2107): GUI enhancements

fritzsck added a comment.Nov 25 2009, 10:42 PM

[SVN revision 20576]
FIX (#2107): GUI enhancements

fritzsck added a comment.Nov 26 2009, 2:17 PM

[SVN revision 20595]
FIX (#2107): delete deprecated

fritzsck added a comment.Nov 26 2009, 2:38 PM

[SVN revision 20597]
FIX (#2107): adding cmake "extended" switch for 3M build

fritzsck added a comment.Nov 27 2009, 9:28 PM

[SVN revision 20645]
FIX (#2107): last fix :-)

zelzer added a subscriber: zelzer.Nov 27 2009, 9:41 PM

[SVN revision 20646]
FIX (#2107): final fix

fritzsck added a comment.Jan 13 2010, 4:35 PM

Some code is not moved to the public repository yet.

• vanbruggen added a subscriber: • vanbruggen.May 18 2010, 10:42 AM

[SVN revision 22905]
ENH (#2107): Added a method to diffusion imaging module to quickly extract the B0 image from a diffusion weighted data set.

• vanbruggen added a comment.May 18 2010, 4:01 PM

[SVN revision 22913]
ENH (#2107): Average all the b0 images in the dataset when extracting the b0 image.

fritzsck added a comment.May 29 2010, 2:09 PM

[SVN revision 23245]
FIX (#2107): moving files open source

fritzsck added a comment.Jun 8 2010, 3:55 PM

[SVN revision 23486]
FIX (#2107): moving files open source

fritzsck added a comment.Jun 8 2010, 3:55 PM

[SVN revision 23487]
FIX (#2107): moving files open source

fritzsck added a comment.Aug 30 2010, 11:49 AM

[SVN revision 25818]
ADD (#2107): Added filters for b0-extraction and brain mask estimation

fritzsck added a comment.Aug 30 2010, 11:51 AM

[SVN revision 25819]
ADD (#2107): Added preprocessing view with brain mask extraction, gradient averaging, and b0-extraction

fritzsck added a comment.Sep 2 2010, 2:03 PM

[SVN revision 25871]
FIX (#2107): Added new gradient direction setter with additional datatype

fritzsck added a comment.Sep 2 2010, 2:04 PM

[SVN revision 25872]
FIX (#2107): Fixed Bug regarding display of diffusion weighted images

fritzsck added a comment.Sep 2 2010, 2:05 PM

[SVN revision 25873]
FIX (#2107): Added additional filters itkB0ImageExtractionImageFilter, itkTensorImageToDiffusionImageFilter, itkTensorToScalarTensorImageFilter, itkTensorToScalarFunction, itkTensorToL2NormFunction

fritzsck added a comment.Sep 2 2010, 2:08 PM

[SVN revision 25874]
FIX (#2107): Added additional filters itkTensorImageToDiffusionImageFilter,itkTensorToL2NormImageFilter

fritzsck added a comment.Sep 2 2010, 2:09 PM

[SVN revision 25875]
FIX (#2107): Added Tensor->DWI functionality

fritzsck added a comment.Sep 17 2010, 4:12 PM

[SVN revision 26165]
FIX (#2107): adapted to novel SIEMENS private tags

fritzsck added a comment.Sep 18 2010, 10:22 PM

[SVN revision 26186]
FIX (#2107): fixed wrong header info from DKFZ

fritzsck added a comment.Sep 19 2010, 11:26 PM

[SVN revision 26199]
FIX (#2107): increased speed by avoiding duplicate eigenvalue sorting

fritzsck added a comment.Sep 19 2010, 11:27 PM

[SVN revision 26200]
FIX (#2107): corrected axial and radial diffusivity calculation. added new measure for clustering.

fritzsck added a comment.Sep 19 2010, 11:28 PM

[SVN revision 26201]
FIX (#2107): corrected axial and radial diffusivity calculation. added new measure for clustering.

fritzsck added a comment.Sep 23 2010, 9:45 PM

[SVN revision 26299]
FIX (#2107): wrong geometry init fixed

fritzsck added a comment.Sep 23 2010, 9:46 PM

[SVN revision 26300]
FIX (#2107): geometry init improved

fritzsck added a comment.Sep 26 2010, 2:54 PM

[SVN revision 26358]
FIX (#2107): corrected anisotropy measure by accounting for div/0

nolden added a subscriber: nolden.Sep 29 2010, 11:04 AM

The module is public now, please open separate bugs for further development.

fritzsck added a comment.Dec 20 2010, 2:09 PM

[SVN revision 28541]
STYLE (#2107): minor adaption to increase readibility

nolden added a comment.Jul 27 2011, 11:42 AM

Merging "applicazion modules" component with "ExtApp plugins"

MITK · MIC · IMSY · DKFZ