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nolden (Marco Nolden)
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Projects (13)

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User Since
Aug 1 2016, 12:10 PM (204 w, 5 d)
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Administrator

Recent Activity

Fri, Jun 19

nolden committed rMITK79cadd0edb2b: Fix CMake variable type of MITK_XVFB_TESTING_COMMAND (authored by nolden).
Fix CMake variable type of MITK_XVFB_TESTING_COMMAND
Fri, Jun 19, 2:08 PM
nolden committed rMITKa0144be45fa8: Fix CMake variable type of MITK_XVFB_TESTING_COMMAND (authored by nolden).
Fix CMake variable type of MITK_XVFB_TESTING_COMMAND
Fri, Jun 19, 2:08 PM
nolden edited projects for T27483: DICOM import of multi-channel data not working, added: MITK (2020); removed MITK.
Fri, Jun 19, 11:26 AM · MITK (2020), Restricted Project, DICOM

Wed, Jun 17

nolden added projects to T27483: DICOM import of multi-channel data not working: DICOM, Restricted Project.
Wed, Jun 17, 8:18 PM · MITK (2020), Restricted Project, DICOM

Mon, Jun 15

nolden removed a project from T23249: Ensure openSSL availability for MITK installers using XNAT plugin or other REST services: Auto-closed.
Mon, Jun 15, 11:12 AM · Restricted Project, CSI-HD, MITK
nolden renamed T23249: Ensure openSSL availability for MITK installers using XNAT plugin or other REST services from Xnat Plugin: How to deal with openSSL dependency to Ensure openSSL availability for MITK installers using XNAT plugin or other REST services.
Mon, Jun 15, 11:06 AM · Restricted Project, CSI-HD, MITK
nolden reopened T23249: Ensure openSSL availability for MITK installers using XNAT plugin or other REST services, a subtask of T23301: XNAT improvements, as Open.
Mon, Jun 15, 11:05 AM · Auto-closed, MITK
nolden reopened T23249: Ensure openSSL availability for MITK installers using XNAT plugin or other REST services as "Open".

I am re-opening this since I think this will also become more relevant with the foreseeable use of other REST APIs from MITK , e.g. how did the nvidia segmentation tool resolve this issue for the windows installer? @kislinsk could you comment?

Mon, Jun 15, 11:05 AM · Restricted Project, CSI-HD, MITK

Jun 3 2020

nolden added a comment to T27437: Migrate MITK to use ITK 5.x .

@floca : thanks. Not the whole trick but helped a lot. I will follow up with more geometry questions later ;)

Jun 3 2020, 3:07 PM · MITK
nolden edited projects for T27085: 2D region growing tool fails for low intensity regions, added: Cleared; removed Missing Info.

I put a _non-shareable_ dataset in /ad/fs/E132-Projekte/Share/MarcoToMitkTeam .

Jun 3 2020, 12:55 PM · Cleared, MITK (2020)

Jun 2 2020

nolden triaged T27461: Update MITK to use VTK 9 as Wishlist priority.
Jun 2 2020, 3:56 PM · MITK (2020)

May 25 2020

nolden triaged T27443: Enable debug configurations for CI as Normal priority.
May 25 2020, 9:44 AM · CI, Restricted Project, MITK
nolden committed rMITK9aaf58fd273e: Fix initialization of vnl_vector to fix assert failure (authored by nolden).
Fix initialization of vnl_vector to fix assert failure
May 25 2020, 9:26 AM
nolden committed rMITKc0f481bc8123: Fix initialization of vnl_vector to fix assert failure (authored by nolden).
Fix initialization of vnl_vector to fix assert failure
May 25 2020, 9:26 AM

May 24 2020

nolden committed rMITK88a9b297dde6: Turn off some warnings-as-errors (authored by nolden).
Turn off some warnings-as-errors
May 24 2020, 9:36 PM
nolden renamed T27308: [statistics] Statistics with segmentations are not automatically updated if segmentation is changed. from [statistics] Statistics with segmentations are not automatically actualized if segmentation is changed. to [statistics] Statistics with segmentations are not automatically updated if segmentation is changed..
May 24 2020, 9:02 PM · Cleared, MITK (2020)
nolden added a comment to T27188: [ImageStatistics] mitkImageStatisticsCalculatorTest fails on some platforms.

Sorry, did not see your claim, was already working on it. Proposed fix in D308

May 24 2020, 7:39 PM · Cleared, MITK (2020), Restricted Project, CI

May 22 2020

nolden added a comment to T27438: Fix compile errors on Fedora 32 using gcc 10.1.

Pushed new branch feature/T27438-fix-gcc10-errors.

May 22 2020, 2:29 PM · MITK (2020)
nolden updated subscribers of T27437: Migrate MITK to use ITK 5.x .

I changed the superbuild to use ITK 5 with compatibilty and fixed some straightforward issues. This branch can be used for further investigations @floca : some ideas about the geometry issues would be very helpful. The migration guide has an overview on the topic but my experience in that area is limited

May 22 2020, 2:22 PM · MITK
nolden added a comment to T27437: Migrate MITK to use ITK 5.x .

Pushed new branch feature/T27437-migrate-to-ITK-5.

May 22 2020, 2:17 PM · MITK
nolden triaged T27438: Fix compile errors on Fedora 32 using gcc 10.1 as Normal priority.
May 22 2020, 1:31 PM · MITK (2020)
nolden triaged T27437: Migrate MITK to use ITK 5.x as Normal priority.
May 22 2020, 1:27 PM · MITK
nolden edited projects for T27188: [ImageStatistics] mitkImageStatisticsCalculatorTest fails on some platforms, added: Cleared; removed Missing Info, Request for Discussion.

Seems the reason this passes on all official clients is Debug vs Release. We currently only test release which ignores asserts. Thus, this should be investigated properly by tracing the problem, Windows and Linux are both affected

May 22 2020, 11:26 AM · Cleared, MITK (2020), Restricted Project, CI

May 8 2020

nolden closed T25702: DICOM sort fails for RWV modality as Resolved.

I got some data now which shows a problem with MITK 2018.4 but works with the current master. I don't see though the RWV thing. Can't remember exactly how I investigated this back then. Let's hope the more robust handling of DICOM fixed this as @floca noted , I informed the reporting users that they should comment if this should be investigated again.

May 8 2020, 3:24 PM · MITK (2020), Restricted Project
nolden edited projects for T25702: DICOM sort fails for RWV modality, added: MITK (2020); removed MITK.

I'm currently trying to get access to the relevant data again.

May 8 2020, 10:39 AM · MITK (2020), Restricted Project

May 7 2020

nolden committed rMITK1780784feb8e: Fixed Qt test invocation (authored by nolden).
Fixed Qt test invocation
May 7 2020, 8:52 PM
nolden committed rMITKf06596f70f8d: Fixed Qt test invocation (authored by nolden).
Fixed Qt test invocation
May 7 2020, 8:52 PM
nolden triaged T27383: Update external toolkits as High priority.
May 7 2020, 4:12 PM · Request for Discussion, MITK
nolden added a comment to T27085: 2D region growing tool fails for low intensity regions.

Does the MITK team have access rights on the NAKO dataset? Then I would suggest an example from there.

May 7 2020, 1:58 PM · Cleared, MITK (2020)
nolden added a revision to T27367: Graphical unit tests fail on some linux setups: Unknown Object (Differential Revision).
May 7 2020, 1:26 PM · MITK (2020)
nolden committed rMITKa93a881e0170: Make linux headless UI testing more configurable (authored by nolden).
Make linux headless UI testing more configurable
May 7 2020, 10:42 AM
nolden committed rMITKeaa893583df1: Moved XVFB testing configuration to superbuild (authored by nolden).
Moved XVFB testing configuration to superbuild
May 7 2020, 10:42 AM
nolden committed rMITKe95eb8546215: Make linux headless UI testing more configurable (authored by nolden).
Make linux headless UI testing more configurable
May 7 2020, 10:42 AM

May 6 2020

nolden triaged T27379: Set up Ubuntu 20.04 CI clients as High priority.
May 6 2020, 4:59 PM · Cleared, Restricted Project, MITK (2020)
nolden closed T25497: Auto-loading of module MitkDICOMQIIO fails in tests as Resolved.

Tests don't fail anymore

May 6 2020, 3:19 PM · MITK
nolden set the image for Missing Info to F1576941: profile.
May 6 2020, 3:14 PM
nolden added a comment to T27085: 2D region growing tool fails for low intensity regions.

@norajitr or someone else: is there an example image in MITK Data to show this behavior?
@norajitr do you know when this stopped working?

May 6 2020, 2:43 PM · Cleared, MITK (2020)
nolden created T27377: Suppress or fix all build warnings .
May 6 2020, 1:55 PM · MITK (2020)

May 5 2020

nolden added a revision to T27367: Graphical unit tests fail on some linux setups: Unknown Object (Differential Revision).
May 5 2020, 4:10 PM · MITK (2020)

May 4 2020

nolden edited projects for T27367: Graphical unit tests fail on some linux setups, added: MITK (2020); removed MITK.

Ok, on fedora there is a newer xvfb version which includes a new option for a more robust choice of a suitable display number which seems to fix the issue for me.

May 4 2020, 2:46 PM · MITK (2020)

Apr 30 2020

nolden triaged T27367: Graphical unit tests fail on some linux setups as High priority.
Apr 30 2020, 10:29 PM · MITK (2020)
nolden raised the priority of T27188: [ImageStatistics] mitkImageStatisticsCalculatorTest fails on some platforms from Normal to High.

Diffusion still shows this:

Apr 30 2020, 6:57 AM · Cleared, MITK (2020), Restricted Project, CI
nolden renamed T27188: [ImageStatistics] mitkImageStatisticsCalculatorTest fails on some platforms from [ImageStatistics] Test failed and is not detected by CTest to [ImageStatistics] mitkImageStatisticsCalculatorTest fails on some platforms.
Apr 30 2020, 6:56 AM · Cleared, MITK (2020), Restricted Project, CI

Apr 27 2020

nolden added a comment to T27001: Rename org.mitk.gui.qt.dicom to org.mitk.gui.qt.dicombrowser.

Strong agree on dicombrowser and avoiding the term editor ...

Apr 27 2020, 10:29 AM · MITK (2020), Cleared

Apr 23 2020

nolden closed T17637: CppMicroServices compile error with VS2013 as Wontfix.

Probably not relevant anymore and VS2013 is not supported anymore

Apr 23 2020, 11:29 AM · Bugzilla, MITK
nolden closed T27344: mitkPackageTest fails on OS X during CI as Resolved.

Test finished successfully after 2h11min ... Still room for optimitzation but this task is resolved ;)

Apr 23 2020, 9:46 AM · MITK

Apr 22 2020

nolden committed rMITK6cb785db3f67: Increase timeout for mitkPackage test (authored by nolden).
Increase timeout for mitkPackage test
Apr 22 2020, 8:48 PM
nolden committed rMITKe5959208343f: Increase timeout for mitkPackage test (authored by nolden).
Increase timeout for mitkPackage test
Apr 22 2020, 8:48 PM
nolden added a revision to T27344: mitkPackageTest fails on OS X during CI: Unknown Object (Differential Revision).
Apr 22 2020, 12:31 PM · MITK
nolden triaged T27344: mitkPackageTest fails on OS X during CI as Normal priority.
Apr 22 2020, 12:00 PM · MITK
nolden added a project to T27177: Segmentation based on Multiframe CT can not be saved as DICOM without error message: Request for Discussion.
Apr 22 2020, 10:15 AM · Request for Discussion, Restricted Project, MITK
nolden added a comment to T27177: Segmentation based on Multiframe CT can not be saved as DICOM without error message.

As stated before, we encountered more examples that raised the unknown exception, so I don’t agree to lower the priority on that.

Apr 22 2020, 10:10 AM · Request for Discussion, Restricted Project, MITK

Apr 10 2020

nolden added a comment to T27289: Different coverage results with OpenCppCoverage and Gcov.

But I think the reason for the different results might be that opencppcoverage does not use any testfiles and cannot load pictures because it cannot find these and there is no option to pass them to opencppcoverage.

Apr 10 2020, 6:36 PM · Restricted Project, MITK

Apr 7 2020

nolden added a comment to T27289: Different coverage results with OpenCppCoverage and Gcov.

If I look at the outputs side by side there is e.g. a difference in the SetSecondaryMask method: it's called 24 times in the CDash run but in the OpenCppCoverage it's red. Which tests did you execute? I think if I remember correctly the numbers in the CTest/CDash result are aggregated over all tests in the default config. Could this make the difference?

Apr 7 2020, 9:51 PM · Restricted Project, MITK

Mar 27 2020

nolden edited projects for T26959: Newly created LabelSet segmentation is not displayed as "outline binary", added: MITK (2020); removed MITK.
Mar 27 2020, 4:35 PM · MITK (2020)
nolden edited projects for T27086: Long file names force segmentation plugin to expand in order to be usable., added: MITK (2020); removed MITK.
Mar 27 2020, 4:34 PM · MITK (2020)
nolden edited projects for T27085: 2D region growing tool fails for low intensity regions, added: MITK (2020); removed MITK.

This was reported as relevant for medical expert segmentation work

Mar 27 2020, 4:34 PM · Cleared, MITK (2020)
nolden added a comment to T26451: DICOM plugin cannot parse DICOM directories in macOS installer.

We discussed this in the MITK meeting today and identified two possible reasons.

Mar 27 2020, 11:32 AM · MITK, Request for Discussion

Mar 20 2020

nolden triaged T27247: MITK_SHOW_CONSOLE_WINDOW is not honored in mitk_create_executable function as Normal priority.
Mar 20 2020, 11:43 AM · Pull Request, Cleared, MITK (2020)

Mar 6 2020

nolden added a comment to T27203: QmitkAbstractNodeSelectionWidgetTest regularly fails on headless Linux.

Nice work! I ran into this as well just a few hours ago and thought it would be nice to evaluate alternative Qt platform options for tests ;)

Mar 6 2020, 4:30 PM · MITK
nolden lowered the priority of T27177: Segmentation based on Multiframe CT can not be saved as DICOM without error message from Unbreak Now! to Low.

The modality of the referenced image is a so-called Enhanced CT Image originating from a 3D C-Arm. It is a current limitation of dcmqi to handle these multiframe series as input, see https://github.com/QIICR/dcmqi/issues/217 . It's not an easy fix in dcmqi and we already discussed with the developers. For now I think we have to keep this in our backlog.

Mar 6 2020, 4:22 PM · Request for Discussion, Restricted Project, MITK
nolden renamed T27177: Segmentation based on Multiframe CT can not be saved as DICOM without error message from Dicom segmentation can not be saved as .dcm without error message to Segmentation based on Multiframe CT can not be saved as DICOM without error message.
Mar 6 2020, 3:38 PM · Request for Discussion, Restricted Project, MITK

Mar 3 2020

nolden created T27186: New segmentation behaviour can be confusing.
Mar 3 2020, 4:09 PM · MITK
nolden triaged T27185: Create new segmentation is sometimes disabled as Unbreak Now! priority.
Mar 3 2020, 4:05 PM · MITK
nolden created T27184: Clipping plane deformation tool doesn't show updates in 3d window.
Mar 3 2020, 3:53 PM · Restricted Project, MITK (2020)
nolden added a comment to T27177: Segmentation based on Multiframe CT can not be saved as DICOM without error message.

@thomass Which version did you test this with?

Mar 3 2020, 11:23 AM · Request for Discussion, Restricted Project, MITK

Feb 14 2020

nolden added a revision to T25745: Integrate new DICOM browser widget from CTK: Unknown Object (Differential Revision).
Feb 14 2020, 2:08 PM · MITK

Feb 10 2020

nolden committed rMITKc55b6aae65cd: Don't reorder includes during clang-format (authored by nolden).
Don't reorder includes during clang-format
Feb 10 2020, 11:55 AM
nolden committed rMITK28a1559a42c5: Don't format anything in the PluginGenerator and templates (authored by nolden).
Don't format anything in the PluginGenerator and templates
Feb 10 2020, 11:55 AM
nolden committed rMITKea713e14c00a: Change inner namespace indentation (authored by nolden).
Change inner namespace indentation
Feb 10 2020, 11:55 AM
nolden committed rMITK2739cf55c171: Fix missing include for MitkIpPicDescriptor (authored by nolden).
Fix missing include for MitkIpPicDescriptor
Feb 10 2020, 11:54 AM
nolden added a comment to T24402: Improve clang-format support.

Pushed new branch T24402-clang-format-improvements.

Feb 10 2020, 11:54 AM · MITK
nolden committed rMITKa41a8d973980: Fix PluginGenerator tests (authored by nolden).
Fix PluginGenerator tests
Feb 10 2020, 11:53 AM
nolden added a comment to T27084: Clean up, improve and test PluginGenerator, ProjectTemplate and MITK_EXTENSION_DIRS mechanism.

Pushed new branch T27084-fix-plugin-generator-tests.

Feb 10 2020, 11:52 AM · Request for Discussion, MITK
nolden updated subscribers of T27084: Clean up, improve and test PluginGenerator, ProjectTemplate and MITK_EXTENSION_DIRS mechanism.
Feb 10 2020, 11:40 AM · Request for Discussion, MITK
nolden triaged T27084: Clean up, improve and test PluginGenerator, ProjectTemplate and MITK_EXTENSION_DIRS mechanism as Normal priority.
Feb 10 2020, 11:40 AM · Request for Discussion, MITK
nolden closed T23040: PluginGenerator doesn't work as Resolved.

Just tested this, works for me. If this is still an issue please re-open.

Feb 10 2020, 11:26 AM · MITK

Feb 7 2020

nolden reassigned T23163: MBI Wiki inventory from nolden to neher.

Peter, Du warst der letzte Aktive ;)

Feb 7 2020, 5:35 PM · Restricted Project
nolden committed rMITKb1587c557765: Fix DICOM SEG read error by updating DCMQI (authored by nolden).
Fix DICOM SEG read error by updating DCMQI
Feb 7 2020, 5:30 PM
nolden closed T25745: Integrate new DICOM browser widget from CTK as Resolved.

This was resolved by T25983

Feb 7 2020, 5:10 PM · MITK
nolden committed rMITKba4a121c0bbc: Use a more recent version of ITK for GCC 9 compatibility (authored by nolden).
Use a more recent version of ITK for GCC 9 compatibility
Feb 7 2020, 5:06 PM

Feb 4 2020

nolden added a comment to T24402: Improve clang-format support.

For the transition process, these bits from the git merge manpage could be useful as well:

Feb 4 2020, 4:28 PM · MITK
nolden added a comment to T24402: Improve clang-format support.

I just picked this up in a small experiment:

Feb 4 2020, 3:12 PM · MITK

Feb 2 2020

nolden closed T25983: Update DICOM related toolkits as Resolved.

Nightly CI looks good as well.

Feb 2 2020, 9:08 AM · MITK, DICOM

Feb 1 2020

nolden committed rMITKd530fc949cb2: Updated CTK and DICOM related toolkits (authored by nolden).
Updated CTK and DICOM related toolkits
Feb 1 2020, 10:52 AM
nolden committed rMITK24d31e394802: Updated CTK and DICOM related toolkits (authored by nolden).
Updated CTK and DICOM related toolkits
Feb 1 2020, 10:52 AM
nolden committed rMITKeedccf5124d6: Fixed CTK URL (authored by nolden).
Fixed CTK URL
Feb 1 2020, 10:52 AM

Jan 31 2020

nolden added a revision to T25983: Update DICOM related toolkits: Unknown Object (Differential Revision).
Jan 31 2020, 5:21 PM · MITK, DICOM

Jan 9 2020

nolden updated subscribers of T26962: Improve dynamic analysis and test coverage reporting.

As @kalali pointed out there was some previous tooling research done internally: T22218

Jan 9 2020, 6:42 PM · CI, MITK
nolden closed T13690: Missing tests in Core\Code\Rendering as Resolved.

I will close this task now. There was valuable work done on adding and updating tests, but this will never be finished anyway. New developments in that area will be tracked in T26962.

Jan 9 2020, 6:40 PM · Bugzilla, MITK
nolden closed T13692: Missing Tests in Core as Resolved.

I will close this task now. There was valuable work done on adding and updating tests, but this will never be finished anyway. New developments in that area will be tracked in T26962.

Jan 9 2020, 6:40 PM · MITK, Bugzilla
nolden renamed T26962: Improve dynamic analysis and test coverage reporting from Improve dynamic analysis reporting to Improve dynamic analysis and test coverage reporting.
Jan 9 2020, 6:39 PM · CI, MITK

Jan 8 2020

nolden triaged T26962: Improve dynamic analysis and test coverage reporting as Wishlist priority.
Jan 8 2020, 10:32 AM · CI, MITK

Jan 7 2020

nolden added a comment to T26955: MitkQtPythonTest fails because of missing library dependencies on Linux.

I can confirm this works. One downside I realized with the current solution is that it only works if the test is executed through ctest, i.e. ctest -R Pytohn , but if you start the driver directly the same problem occurs. I think it is ok for now, but would be some motivation to find a solution that works without a special environment, since for example while debugging you usually start the executable directly.

Jan 7 2020, 5:45 PM · MITK

Dec 19 2019

nolden triaged T26942: Crash on DICOM loading as Normal priority.
Dec 19 2019, 1:54 PM · DICOM, d:cipher, MITK

Dec 16 2019

nolden created T26934: Multiple logos in screenshot when using screenshot maker plugin.
Dec 16 2019, 5:35 PM · MITK

Nov 25 2019

nolden committed rMITK83f50cd74bc2: Removed some unnecessary copying of BoundsArrays (authored by nolden).
Removed some unnecessary copying of BoundsArrays
Nov 25 2019, 1:06 PM

Oct 25 2019

nolden added a member for MITK-MBI: k656s.
Oct 25 2019, 4:52 PM
nolden added a member for MITK: k656s.
Oct 25 2019, 4:44 PM

Oct 22 2019

nolden added a comment to T23293: Apply C++ 11 modernizations.

Thanks for picking up!

Oct 22 2019, 5:33 PM · MITK