Page MenuHomePhabricator

Define clean workflow for segmentation copying
Open, NormalPublic

Description

We often get the request for duplicating and moving multiple segmentations from one image to another.
Use cases could be something like

  • segmenting on T1 and having the same masks on T2
  • segmenting on CT and having an initial guess for all masks on MR
  • segmenting on MR at t=0 and having an initial guess for all masks on MR at t=1

Possible ways to do this could be:

  • loading the segmentation node twice and moving it in the data manager (enabling the data manager preference Allow changing of parent node)
  • using the image cropper

I would like to collect possible alternatives and pittfalls / drawbacks, especially when it comes to different geometries, whole body segmentation, a large amount of single segmentation nodes etc.

Related Objects

Mentioned Here
T1: testbug1

Event Timeline

kalali triaged this task as Normal priority.Feb 24 2020, 2:34 PM
kalali created this task.
kalali updated the task description. (Show Details)
kalali edited projects, added MITK (v2021.10); removed MITK.

No further work has been done here but I would like to keep this topic in mind when refactoring the segmentation modules.

This is a bigger topic, connected to the refactoring of the segmentation and should be handled in multiple sub-tasks, to split the topic into smaller issues.