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floca (Ralf Omar Floca)
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Projects (13)

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User Since
Aug 1 2016, 12:10 PM (286 w, 1 d)

Recent Activity

Thu, Jan 20

floca edited projects for T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep, added: MITK, Next Milestone; removed MITK (v2022.04).
Thu, Jan 20, 10:32 AM · Next Milestone, MITK
floca lowered the priority of T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels from High to Normal.
Thu, Jan 20, 10:30 AM · MITK (v2022.04), Request for Discussion
floca edited projects for T28526: [Segmentation] Check tools (especially 3D tools) to correctly handle updating of LabelSetImage, added: MITK, Next Milestone; removed MITK (v2022.04).
Thu, Jan 20, 10:26 AM · Next Milestone, MITK
floca edited projects for T28561: Refactor/Fix mitk::SegmentationInteractor::ChangeActiveLabel, added: MITK, Next Milestone; removed MITK (v2022.04).
Thu, Jan 20, 10:25 AM · Next Milestone, MITK
floca added a project to T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations: Missing Info.

@isensee Could you give some information regarding the question (see comment above) . Thanks.

Thu, Jan 20, 10:24 AM · Missing Info, MITK (v2022.04)
floca edited projects for T8140: Reimplement volume annotations for segmentations, added: MITK, Next Milestone; removed MITK (v2022.04).
Thu, Jan 20, 10:07 AM · Next Milestone, MITK, Request for Discussion, Bugzilla
floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary".
Thu, Jan 20, 10:00 AM · Next Milestone, MITK
floca added a subtask for T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary": T28524: Refactor LabelSetImage and associated classes..
Thu, Jan 20, 10:00 AM · Request for Discussion, Next Milestone, MITK
floca edited projects for T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary", added: MITK, Next Milestone, Request for Discussion; removed MITK (v2022.04).

We have to clarify the purposes/semantics of the properties (see above) in the future and which we want to keep.

Thu, Jan 20, 10:00 AM · Request for Discussion, Next Milestone, MITK
floca edited projects for T28525: Design refactoring of LabelSetImage and associated classes, added: Next Milestone, MITK; removed MITK (v2022.04).
Thu, Jan 20, 9:35 AM · MITK, Next Milestone
floca edited projects for T28524: Refactor LabelSetImage and associated classes., added: MITK, Next Milestone; removed MITK (v2022.04).
Thu, Jan 20, 9:35 AM · Next Milestone, MITK
floca edited projects for T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View, added: MITK, Next Milestone; removed MITK (v2022.04).
Thu, Jan 20, 9:33 AM · Next Milestone, MITK, Restricted Project, Cleared

Wed, Jan 19

floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T23981: Multilabel color map should disable interpolation.
Wed, Jan 19, 5:45 PM · Next Milestone, MITK
floca added subtasks for T23981: Multilabel color map should disable interpolation: T28524: Refactor LabelSetImage and associated classes., T25445: MultiLabel segmentation mapper is very slow.
Wed, Jan 19, 5:45 PM · Restricted Project, MITK
floca added a parent task for T25445: MultiLabel segmentation mapper is very slow: T23981: Multilabel color map should disable interpolation.
Wed, Jan 19, 5:45 PM · MITK (v2022.04)
floca added a subtask for T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: T28524: Refactor LabelSetImage and associated classes..
Wed, Jan 19, 5:44 PM · Next Milestone, MITK, Restricted Project, Cleared
floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.
Wed, Jan 19, 5:44 PM · Next Milestone, MITK
floca added a subtask for T25445: MultiLabel segmentation mapper is very slow: T28524: Refactor LabelSetImage and associated classes..
Wed, Jan 19, 5:43 PM · MITK (v2022.04)
floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T25445: MultiLabel segmentation mapper is very slow.
Wed, Jan 19, 5:43 PM · Next Milestone, MITK
floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T26397: Multilabel Segmentation file cannot be converted to multilabel segmentation in MITK.
Wed, Jan 19, 5:43 PM · Next Milestone, MITK
floca added a subtask for T26397: Multilabel Segmentation file cannot be converted to multilabel segmentation in MITK: T28524: Refactor LabelSetImage and associated classes..
Wed, Jan 19, 5:43 PM · MITK
floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T22458: Merging a label in the MultiLabel segmentation plugin leaves one label without a segmentation.
Wed, Jan 19, 5:42 PM · Next Milestone, MITK
floca added a subtask for T22458: Merging a label in the MultiLabel segmentation plugin leaves one label without a segmentation: T28524: Refactor LabelSetImage and associated classes..
Wed, Jan 19, 5:42 PM · MICO (Demo_MICCAI_2017), MITK
floca added a project to T25754: Cannot use tools in multilabel segmentation view without restart: Missing Info.

Is this still a valid issue?

Wed, Jan 19, 5:41 PM · Missing Info, MITK
floca added a subtask for T22593: Update the MitkMultilabelTestDriver: T28524: Refactor LabelSetImage and associated classes..
Wed, Jan 19, 5:40 PM · MITK
floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T22593: Update the MitkMultilabelTestDriver.
Wed, Jan 19, 5:40 PM · Next Milestone, MITK

Tue, Jan 11

floca added a comment to T28903: [Segmentation] Monitoring of segmentation nodes in views is error prone/ not safe..

However, I agree that it should be enough to only care for the validation of the currently selected input nodes (working node / reference node).
I can propose a change and we can test if this is the desired behavior.

That would be nice. Thanks.

Tue, Jan 11, 4:43 PM · MITK (v2022.04)
floca added a comment to T28752: [Segmentation] Move Segmentation utilities widgets to SegmentationUI module.

Good idea to talk about it in the group meeting.

Tue, Jan 11, 4:36 PM · MITK (v2022.04)

Dec 7 2021

floca triaged T28884: MITK Flowbench -Save Seg not working, due to file naming issues as Normal priority.
Dec 7 2021, 10:52 AM · MITK (v2022.04), Kaapana (internal)
floca added a comment to T28884: MITK Flowbench -Save Seg not working, due to file naming issues.

just saw it. I guess your problem is that you want to write to a directory that does not exist.

Dec 7 2021, 10:52 AM · MITK (v2022.04), Kaapana (internal)
floca added a comment to T28884: MITK Flowbench -Save Seg not working, due to file naming issues.

do you set --flow.outputdir? If so who?

Dec 7 2021, 10:19 AM · MITK (v2022.04), Kaapana (internal)

Dec 6 2021

floca added a comment to T28886: MITK Flowbench - Reopen created segmentation not working.

Found the problem in the code. Will be solved by T28903

Dec 6 2021, 9:55 PM · MITK (v2022.04), Missing Info, Kaapana (internal)
floca added a member for Kaapana (internal): kislinsk.
Dec 6 2021, 9:52 PM
floca moved T28903: [Segmentation] Monitoring of segmentation nodes in views is error prone/ not safe. from Backlog to MITK Meeting on the Request for Discussion board.
Dec 6 2021, 9:03 PM · MITK (v2022.04)
floca triaged T28903: [Segmentation] Monitoring of segmentation nodes in views is error prone/ not safe. as Normal priority.
Dec 6 2021, 9:02 PM · MITK (v2022.04)

Dec 3 2021

floca reopened T26949: DICOM SEG - 3D segmentations with only one slice cannot be reloaded as DICOM SEG as "Open".
Dec 3 2021, 11:27 AM · MITK, DICOM, Missing Info

Dec 1 2021

floca moved T28866: [Segmentation] Redundant label "recomputation" for Otsu/Watershed (& nnUNet) when any of the Preview-generated labels are selected to Confirm from Backlog to Segmentation on the MITK (v2022.04) board.
Dec 1 2021, 5:16 PM · MITK (v2022.04)
floca edited projects for T28866: [Segmentation] Redundant label "recomputation" for Otsu/Watershed (& nnUNet) when any of the Preview-generated labels are selected to Confirm, added: MITK (v2022.04); removed Request for Discussion.
Dec 1 2021, 5:15 PM · MITK (v2022.04)
floca moved T28866: [Segmentation] Redundant label "recomputation" for Otsu/Watershed (& nnUNet) when any of the Preview-generated labels are selected to Confirm from Backlog to MITK Meeting on the Request for Discussion board.
Dec 1 2021, 10:50 AM · MITK (v2022.04)

Nov 30 2021

floca edited projects for T28886: MITK Flowbench - Reopen created segmentation not working, added: MITK (v2022.04); removed MITK.
Nov 30 2021, 6:17 PM · MITK (v2022.04), Missing Info, Kaapana (internal)
floca added a project to T28886: MITK Flowbench - Reopen created segmentation not working: Missing Info.

can you provide the files necessary to reproduce the problem outside of a container? (so at least image, seg and the scene file you generate automatically, and the call of MITK Workbench you use.)

Nov 30 2021, 6:17 PM · MITK (v2022.04), Missing Info, Kaapana (internal)
floca triaged T28887: [Registration] MITKMatchPoint code should use PropertyRelationRules for its results as Normal priority.
Nov 30 2021, 5:57 PM · MITK
floca created T28887: [Registration] MITKMatchPoint code should use PropertyRelationRules for its results.
Nov 30 2021, 5:57 PM · MITK
floca moved T28884: MITK Flowbench -Save Seg not working, due to file naming issues from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 30 2021, 3:45 PM · MITK (v2022.04), Kaapana (internal)
floca edited projects for T28884: MITK Flowbench -Save Seg not working, due to file naming issues, added: MITK (v2022.04); removed MITK.
Nov 30 2021, 3:45 PM · MITK (v2022.04), Kaapana (internal)

Nov 25 2021

floca committed rKAAPANAdd7afeb5b0f1: First draft of AVID operators (authored by floca).
First draft of AVID operators
Nov 25 2021, 2:32 PM
floca committed rKAAPANAe1bf3594b4a4: several small fixes i forgot to push in August. (authored by floca).
several small fixes i forgot to push in August.
Nov 25 2021, 2:32 PM

Nov 22 2021

floca added a comment to T28274: [Volume Visualization] Volume Rendering for 4D images does only work on timestep 0 or not at all.

For the histogram part the reason is (swiftly looking into the code) that Neither the TransferFunctionWidgets nor the used histogramm classes support 4D images, the assume images to be static. But as the QmitkTransferFunctionWidget want the whole node, we cannot just use a TimePointSelector filter in the view. It seems like we need to extend the interface of the TransferFunctionWidgets (same for the QmitkTransferFunctionGeneratorWidget) in order to also set the current time step and handel it internally correctly.

Nov 22 2021, 10:41 AM · Restricted Project, MITK (v2022.04), Request for Discussion

Nov 17 2021

floca moved T16153: [Segmentation] Jump to center of mass of segmentation on click from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:05 PM · MITK (v2022.04), Bugzilla
floca moved T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary" from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:04 PM · Request for Discussion, Next Milestone, MITK
floca moved T27133: [Segmentation] Is QmitkDataSelectionWidget needed anymore? from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:04 PM · MITK (v2022.04)
floca moved T27149: [Segmentation] Interpolation nodes / position nodes are not correctly hidden from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:04 PM · MITK (v2022.04)
floca moved T28146: Rework how SegTool2D should add contour markers from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:02 PM · MITK (v2022.04)
floca moved T28244: [Segmentation] Fast Marching Tool not really responsive for large images from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:02 PM · MITK (v2022.04)
floca moved T28247: [Segmentation] Watershed tool freezes when slider and threshold are set to a low value from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:02 PM · MITK (v2022.04), Missing Info, Request for Discussion
floca moved T18014: write tool interaction tests for segmentation from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:02 PM · MITK (v2022.04), Bugzilla
floca moved T25192: Enable DICOM SEG conversion for nrrd segmentations from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:01 PM · MITK (v2022.04), MICO (Demo MICCAI 2018)
floca moved T25445: MultiLabel segmentation mapper is very slow from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:01 PM · MITK (v2022.04)
floca moved T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:01 PM · MITK (v2022.04), Request for Discussion
floca moved T26950: Add rule class for DICOM Seg relations to source image from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:01 PM · MITK (v2022.04), Cleared
floca moved T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:01 PM · MITK (v2022.04)
floca moved T26952: Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG) from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:00 PM · MITK (v2022.04)
floca moved T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:00 PM · MITK (v2022.04), Cleared
floca moved T27060: [Segmentation] Rework InterpolationWidget to not depend on data manager view directly from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:00 PM · MITK (v2022.04)
floca moved T27637: [Segmentation] Multilabel label name dialoge on label creation is a UX problem from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:00 PM · MITK (v2022.04), Request for Discussion, Cleared
floca moved T27684: [Segmentation] Improve Region Growing 2D algorithm and interaction from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2022.04)
floca moved T27807: [MultiLabel Segmentation] Inspection of module and plugin from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2022.04)
floca moved T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2022.04), Restricted Project, Cleared
floca moved T28131: [MultiLabel Segmentation] 3D Threshold tool does not work with multiple labels / layers from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2022.04)
floca moved T28135: [MultiLabel Segmentation] Utilities view cannot handle non-binary multilabel segmentations from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2022.04)
floca moved T28139: [LabelSetImage] Ambigious meaning of "layer" in LabelSetImage from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2022.04), Request for Discussion
floca moved T28140: [MultiLabel Segmentation] Default parameter (unsigned int layer = 0) is unnecessary and causes problems from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2022.04), Request for Discussion
floca moved T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures. from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2022.04)
floca moved T28176: [Segmentation] Inspection of module and plugin from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2022.04)
floca moved T28181: [Segmentation] Should warning messages be passed on to the UI? from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2022.04)
floca moved T28320: [Segmentation] Region growing does not work if seed point is already inside a segmentation from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:58 AM · MITK (v2022.04), Missing Info, Request for Discussion
floca moved T28548: Allow Zooming during creation of Segmentation. from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:58 AM · MITK (v2022.04), Request for Discussion
floca moved T28607: [Segmentation] LiveWire tool issues and improvements from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:58 AM · MITK (v2022.04)
floca moved T28641: [Segmentation] Improve Watershed tool documentation from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:57 AM · MITK (v2022.04), Cleared
floca moved T28664: [Selection concept] Single node selection widget of ML view reacts if ML view is hidden from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:57 AM · MITK (v2022.04), Request for Discussion
floca moved T28675: Boolean Operations in Segmentation utilities are slow from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:57 AM · MITK (v2022.04)
floca moved T28691: AutoSegmentationWithPreviewTool tool manager won't support multi threading from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:57 AM · MITK (v2022.04), Request for Discussion
floca moved T28736: Preferences for segmentation '2D display' are not properly utilized from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:57 AM · MITK (v2022.04)
floca moved T8140: Reimplement volume annotations for segmentations from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:57 AM · Next Milestone, MITK, Request for Discussion, Bugzilla
floca moved T27810: [Multilabel Segmentation] Inconsistencies and unclear functionality in operations of Utilities view from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2022.04), Cleared, Restricted Project
floca moved T28134: [Multilabel Segmentation] No warning triggered when using different mask geometries / dimensions in Utilities View from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2022.04), Cleared
floca moved T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · Request for Discussion, MITK (v2022.04), Breaking Change
floca moved T28264: [Segmentation Utilities] Various issues from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2022.04), Cleared
floca moved T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · Next Milestone, MITK
floca moved T28464: [Segmentation] New Add/Remove tool from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2022.04), Cleared
floca moved T28479: [Segmentation] Rethink / reevaluate our existing segmentation tools / algorithms from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2022.04)
floca moved T28499: Refactor/rewrite RegionGrowing3D tool from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2022.04), Request for Discussion
floca moved T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · Missing Info, MITK (v2022.04)
floca moved T28561: Refactor/Fix mitk::SegmentationInteractor::ChangeActiveLabel from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · Next Milestone, MITK
floca moved T28526: [Segmentation] Check tools (especially 3D tools) to correctly handle updating of LabelSetImage from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · Next Milestone, MITK
floca moved T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · Next Milestone, MITK, Restricted Project, Cleared
floca moved T28524: Refactor LabelSetImage and associated classes. from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · Next Milestone, MITK
floca moved T28525: Design refactoring of LabelSetImage and associated classes from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK, Next Milestone
floca moved T28640: [Segmentation] Add tool checks for dynamic plugin view from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:55 AM · MITK (v2022.04)
floca moved T28752: [Segmentation] Move Segmentation utilities widgets to SegmentationUI module from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:55 AM · MITK (v2022.04)