Page MenuHomePhabricator

floca (Ralf Omar Floca)
User

Projects (14)

User Details

User Since
Aug 1 2016, 12:10 PM (330 w, 4 d)

Recent Activity

Wed, Nov 30

kalali awarded MITK v2022.10 a Yellow Medal token.
Wed, Nov 30, 4:20 PM
floca closed T16132: Allow segmentation with several images as Wontfix.
Wed, Nov 30, 12:16 PM · MITK (v2023.04), Request for Discussion, Bugzilla
floca closed T28816: [Segmentation] "New Segmentation" dialog to small as Resolved.
Wed, Nov 30, 12:13 PM · MITK (v2023.04), Cleared, Restricted Project, Checklist
floca moved T29416: Segmentation utilities can only handle unsigned char and unsigned short, no other types from In candidates to Segmentation on the MITK (v2023.04) board.
Wed, Nov 30, 12:12 PM · Missing Info, MITK (v2023.04)
floca moved T29396: [Segmentation] Newly created labelset image has wrong image type from In candidates to Segmentation on the MITK (v2023.04) board.
Wed, Nov 30, 12:06 PM · MITK (v2023.04)
floca moved T29313: Add a Test to check if the GrowCut algorithm produces a different output from In candidates to Segmentation on the MITK (v2023.04) board.
Wed, Nov 30, 12:06 PM · MITK (v2023.04)
floca moved T29369: [Segmentation Utilities] Handle / select different labels independently from In candidates to Segmentation on the MITK (v2023.04) board.
Wed, Nov 30, 12:05 PM · MITK (v2023.04)
floca moved T27809: [Segmentation Utilities] "Labels" tabs in operations of Utilities view is empty from In candidates to Segmentation on the MITK (v2023.04) board.
Wed, Nov 30, 12:03 PM · MITK (v2023.04), Request for Discussion
floca moved T29362: [Multi widget] Plane suggestion of QmitkSlicesInterpolator does not work correctly from In candidates to mxn MultiWidget on the MITK (v2023.04) board.
Wed, Nov 30, 12:00 PM · Request for Discussion, MITK (v2023.04)
floca moved T29365: [mxn multi widget] Pointset interaction not working from In candidates to mxn MultiWidget on the MITK (v2023.04) board.
Wed, Nov 30, 11:58 AM · MITK (v2023.04)
floca moved T29364: [mxn multi widget] Image navigator cannot be used from In candidates to mxn MultiWidget on the MITK (v2023.04) board.
Wed, Nov 30, 11:58 AM · MITK (v2023.04)
floca moved T29333: [mxn multi widget] Measurements / planar figure not working from In candidates to mxn MultiWidget on the MITK (v2023.04) board.
Wed, Nov 30, 11:58 AM · MITK (v2023.04)
floca moved T29402: [mxn multi widget] Concept for blocking individual render windows from In candidates to mxn MultiWidget on the MITK (v2023.04) board.
Wed, Nov 30, 11:58 AM · MITK (v2023.04), Request for Discussion
floca moved T29335: [Segmentation] Show interactive warning for uninitialized render window geometry from In candidates to mxn MultiWidget on the MITK (v2023.04) board.
Wed, Nov 30, 11:57 AM · MITK (v2023.04)
floca moved T29240: [mxn multi widget] Allow different time navigation controller for each individual render window from In candidates to mxn MultiWidget on the MITK (v2023.04) board.
Wed, Nov 30, 11:57 AM · MITK (v2023.04)
floca placed T27684: [Segmentation] Improve Region Growing 2D algorithm and interaction up for grabs.
Wed, Nov 30, 11:52 AM · MITK (v2023.04)
floca moved T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary" from In candidates to Segmentation on the MITK (v2023.04) board.
Wed, Nov 30, 11:39 AM · MITK (v2023.04), Checklist, Request for Discussion
floca added a comment to T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary".

Also regard T25445: MultiLabel segmentation mapper is very slow

Wed, Nov 30, 11:39 AM · MITK (v2023.04), Checklist, Request for Discussion
floca moved T25445: MultiLabel segmentation mapper is very slow from In candidates to Segmentation on the MITK (v2023.04) board.

This issue should also be regarded if T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary" is done.

Wed, Nov 30, 11:38 AM · MITK (v2023.04), Request for Discussion
floca moved T29392: [Segmentation] Add dedicated writer to store multi-label images in nifti from In candidates to Segmentation on the MITK (v2023.04) board.
Wed, Nov 30, 11:29 AM · MITK (v2023.04), Next Milestone
floca lowered the priority of T29163: [XNAT] Opening XNAT session fails from High to Normal.
Wed, Nov 30, 11:28 AM · MITK (v2023.04)
floca added a parent task for T29027: Move NodeSelectionWidgets to QtWidgets module: T29130: [WorkBench] Segmentation fault when "Close Project" is invoked and QmitkDataStorageComboBox widget is in UI.
Wed, Nov 30, 11:22 AM · MITK (v2023.04)
floca added a subtask for T29130: [WorkBench] Segmentation fault when "Close Project" is invoked and QmitkDataStorageComboBox widget is in UI: T29027: Move NodeSelectionWidgets to QtWidgets module.
Wed, Nov 30, 11:22 AM · MITK (v2023.04)
floca removed a project from T29130: [WorkBench] Segmentation fault when "Close Project" is invoked and QmitkDataStorageComboBox widget is in UI: Request for Discussion.

Now with the preferences moved to micro services, we can move the selection widget T29027 and then use them also here.

Wed, Nov 30, 11:22 AM · MITK (v2023.04)
floca triaged T29390: How to ease the handling of external generated segmentations as Normal priority.
Wed, Nov 30, 11:17 AM · MITK (v2023.04), Request for Discussion
floca renamed T29390: How to ease the handling of external generated segmentations from How to easy the handling of external generated segmentations to How to ease the handling of external generated segmentations.
Wed, Nov 30, 11:14 AM · MITK (v2023.04), Request for Discussion
floca moved T29381: Move Multilabel classes to Core module from In candidates to Backlog on the MITK (v2023.04) board.
Wed, Nov 30, 11:13 AM · MITK, Request for Discussion
floca moved T28816: [Segmentation] "New Segmentation" dialog to small from Backlog to In candidates on the MITK (v2023.04) board.
Wed, Nov 30, 10:23 AM · MITK (v2023.04), Cleared, Restricted Project, Checklist
floca moved T28884: MITK Flowbench -Save Seg not working, due to file naming issues from Backlog to Segmentation on the MITK (v2023.04) board.
Wed, Nov 30, 10:23 AM · MITK (v2023.04), Request for Discussion, Kaapana (internal)
floca moved T29210: Clarify / remove axis-labeling for anatomical planes from Backlog to In candidates on the MITK (v2023.04) board.
Wed, Nov 30, 10:21 AM · MITK (v2023.04), Request for Discussion
floca moved T29236: Check for prerequisites and give meaningful hints for missing packages from Backlog to In candidates on the MITK (v2023.04) board.
Wed, Nov 30, 10:19 AM · MITK (v2023.04)
floca moved T29076: [Segmentation] Pressing DEL should delete a label from Backlog to Segmentation on the MITK (v2023.04) board.
Wed, Nov 30, 10:18 AM · MITK (v2023.04), Checklist
floca moved T29243: nnUNet in MITK: Downloading pre-trained models in Kaapana context from Backlog to In candidates on the MITK (v2023.04) board.
Wed, Nov 30, 10:16 AM · MITK (v2023.04), Kaapana (internal)
floca moved T29242: Revamp nnUNet tool GUI from Backlog to In candidates on the MITK (v2023.04) board.
Wed, Nov 30, 10:14 AM · MITK (v2023.04)
floca moved T25445: MultiLabel segmentation mapper is very slow from Backlog to In candidates on the MITK (v2023.04) board.
Wed, Nov 30, 10:09 AM · MITK (v2023.04), Request for Discussion
floca moved T26394: [Render window manager] Provide tree view / model from Backlog to In candidates on the MITK (v2023.04) board.
Wed, Nov 30, 10:07 AM · MITK (v2023.04), Restricted Project
floca moved T26950: Add rule class for DICOM Seg relations to source image from Backlog to Segmentation on the MITK (v2023.04) board.
Wed, Nov 30, 9:16 AM · MITK (v2023.04), Cleared
floca moved T27913: [Segmentation] Warnings in utilities view are inconsistent from Backlog to Segmentation on the MITK (v2023.04) board.
Wed, Nov 30, 9:14 AM · MITK (v2023.04)
floca moved T29412: List of MITK publications on web page is not up to date from Backlog to MITK Meeting on the Request for Discussion board.
Wed, Nov 30, 9:13 AM · Request for Discussion, MITK
floca edited projects for T28776: Perfusion DataFit View: Inconsistencies in the signal conversion using the turboFLASH sequence , added: Next Milestone, MITK; removed MITK (v2023.04).
Wed, Nov 30, 8:54 AM · MITK, Next Milestone, Checklist
floca moved T29415: [mxn multi widget] Allow mxn windows to show 3D view from In candidates to Cycle on the MITK (v2023.04) board.
Wed, Nov 30, 8:52 AM · MITK (v2023.04)
floca moved T29379: MONAI Label REST Response JSON issues, allegedly from Backlog to Cycle on the MITK (v2023.04) board.
Wed, Nov 30, 8:52 AM · MITK (v2023.04)
floca moved T29295: MONAI Label App as auto-segmentation tool in MITK from Backlog to Cycle on the MITK (v2023.04) board.
Wed, Nov 30, 8:52 AM · MITK (v2023.04)

Tue, Nov 29

floca added a comment to T29312: Add support for using layers other than layer 0 of the current LabelSetImage.

Oh right, when I reworked the tool I made it always work with the active layer.

Tue, Nov 29, 3:30 PM · MITK (v2023.04)

Mon, Nov 28

floca added a comment to T27189: REST API for data storage.

OK. Thanks for the clarification.

Mon, Nov 28, 9:31 AM · MITK (v2023.04), Restricted Project, Request for Discussion

Fri, Nov 25

floca added a comment to T27718: Miniapp for basic DICOM testing.

Discussion result: nice to have wären auch die Informationen des "first pass" (-> welche reader configuratoin, findet wieviele volumes und welche Dateien werden verwendet) schön.

Fri, Nov 25, 2:11 PM · MITK (v2023.04), Kaapana (internal)
floca added a parent task for T25192: Enable DICOM SEG conversion for nrrd segmentations: T27178: MITK - DICOM Seg - loaded DCM SEG not associated with referenced DCM .
Fri, Nov 25, 11:36 AM · MITK, Next Milestone, MICO (Demo MICCAI 2018)
floca added a subtask for T27178: MITK - DICOM Seg - loaded DCM SEG not associated with referenced DCM : T25192: Enable DICOM SEG conversion for nrrd segmentations.
Fri, Nov 25, 11:36 AM · Missing Info, MITK
floca reopened T27178: MITK - DICOM Seg - loaded DCM SEG not associated with referenced DCM as "Open".
Fri, Nov 25, 11:31 AM · Missing Info, MITK
floca moved T27189: REST API for data storage from Backlog to In candidates on the MITK (v2023.04) board.
Fri, Nov 25, 11:28 AM · MITK (v2023.04), Restricted Project, Request for Discussion
floca edited projects for T27189: REST API for data storage, added: MITK (v2023.04); removed MITK, Next Milestone.
Fri, Nov 25, 11:27 AM · MITK (v2023.04), Restricted Project, Request for Discussion
floca added a comment to T27189: REST API for data storage.

@gaoh Please help me out. what was the final status of Elisabth's work here? Totaly dropped off the radar.

Fri, Nov 25, 11:27 AM · MITK (v2023.04), Restricted Project, Request for Discussion
floca added a parent task for T29389: Python utility module: T29390: How to ease the handling of external generated segmentations.
Fri, Nov 25, 11:17 AM · Next Milestone, Request for Discussion, MITK
floca added a subtask for T29390: How to ease the handling of external generated segmentations: T29389: Python utility module.
Fri, Nov 25, 11:17 AM · MITK (v2023.04), Request for Discussion
floca moved T29390: How to ease the handling of external generated segmentations from Backlog to In candidates on the MITK (v2023.04) board.
Fri, Nov 25, 11:15 AM · MITK (v2023.04), Request for Discussion
floca edited projects for T29390: How to ease the handling of external generated segmentations, added: MITK (v2023.04); removed MITK.
Fri, Nov 25, 11:14 AM · MITK (v2023.04), Request for Discussion
floca added a comment to T29390: How to ease the handling of external generated segmentations.

this is also partially covered/related with T29392: [Segmentation] Add dedicated writer to store multi-label images in nifti

Fri, Nov 25, 11:14 AM · MITK (v2023.04), Request for Discussion
floca moved T27718: Miniapp for basic DICOM testing from Backlog to In candidates on the MITK (v2023.04) board.
Fri, Nov 25, 11:08 AM · MITK (v2023.04), Kaapana (internal)
floca edited projects for T27718: Miniapp for basic DICOM testing, added: MITK (v2023.04); removed MITK.
Fri, Nov 25, 11:07 AM · MITK (v2023.04), Kaapana (internal)

Thu, Nov 24

floca closed T28135: [MultiLabel Segmentation] Utilities view cannot handle non-binary multilabel segmentations as Resolved.
Thu, Nov 24, 2:37 PM · MITK (v2023.04)
floca closed T28135: [MultiLabel Segmentation] Utilities view cannot handle non-binary multilabel segmentations, a subtask of T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation, as Resolved.
Thu, Nov 24, 2:37 PM · MITK (v2022.10), Breaking Change
floca moved T28139: [LabelSetImage] Ambigious meaning of "layer" in LabelSetImage from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 2:36 PM · MITK (v2023.04), Request for Discussion
floca moved T28140: [MultiLabel Segmentation] Default parameter (unsigned int layer = 0) is unnecessary and causes problems from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 2:36 PM · MITK (v2023.04), Request for Discussion
floca moved T28262: TimeGeometry inconsistent documentation and implementation of time bounds and checks from Backlog to Others on the MITK (v2023.04) board.
Thu, Nov 24, 2:28 PM · MITK (v2023.04)
floca moved T28479: [Segmentation] Rethink / reevaluate our existing segmentation tools / algorithms from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 2:27 PM · MITK (v2023.04)
floca moved T28675: Boolean Operations in Segmentation utilities are slow from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 2:24 PM · MITK (v2023.04)
floca moved T28752: [Segmentation] Move Segmentation utilities widgets to SegmentationUI module from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 2:24 PM · MITK (v2023.04)
floca moved T28797: [Segmentation[MultiLabel][Utilities] Using 4D data with dynamic segmentations results in 3D data from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 2:09 PM · MITK (v2023.04), Checklist
floca moved T29098: [3D Segmentation] UL Threshold Tool - 0 intensity value not include in slider range? from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 2:03 PM · MITK (v2023.04), Checklist
floca moved T28785: Levelwindow UX proposals/comments from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 2:03 PM · MITK (v2023.04), Checklist, Missing Info, Request for Discussion
floca moved T28791: [Segmentation][Multilabel][Options]"Create polygon model" issues for large images from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 2:01 PM · MITK (v2023.04), Checklist
floca moved T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 2:01 PM · MITK (v2023.04), Checklist
floca moved T29157: NCT ISSO Annotation Support with MITK Segmentation Flow from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 1:56 PM · MITK (v2023.04)
floca moved T29168: [Multilabel Segmentation] Definition and usage of masking and maskstamping from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 1:56 PM · MITK (v2023.04), Request for Discussion
floca moved T29191: [SEG] New segmentation tool candidates from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 12:22 PM · MITK (v2023.04)
floca moved T29192: [SEG] MONAI Label support in MITK Workbench from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 12:21 PM · MITK (v2023.04)
floca added a comment to T29193: [SEG] Add a superpixel tool.

One thing to consider might be, is SLIC even useful? If neural networks are going to be taking care of segmentation anyway, what is it's likely sell-by date? This depends on how quickly NN based segmentation algorithms are incorporated into MITK.

Thu, Nov 24, 12:21 PM · MITK (v2023.04)
floca moved T29193: [SEG] Add a superpixel tool from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 12:15 PM · MITK (v2023.04)
floca moved T29197: [Segmentation] Is the classificationsegmentation-plugin used / required? from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 12:12 PM · Request for Discussion, MITK (v2023.04)
floca added a project to T29197: [Segmentation] Is the classificationsegmentation-plugin used / required?: Request for Discussion.
Thu, Nov 24, 12:12 PM · Request for Discussion, MITK (v2023.04)
floca moved T29204: [SEG] Rework properties of Label class + add instance information from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 12:11 PM · MITK (v2023.04), Request for Discussion, Breaking Change
floca moved T29285: [Checklist] Revise Remeshing checklist from Backlog to Tests/Checklists on the MITK (v2023.04) board.
Thu, Nov 24, 12:11 PM · MITK (v2023.04), Checklist
floca moved T29310: [ITK] Check if ITK 5.3 adds the GrowCut remote module by default from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 12:10 PM · MITK (v2023.04)
floca closed T29311: Further observation of the GrowCut segmentation tool on 4D images, a subtask of T29309: [GrowCut] Further remarks regarding GrowCut, as Resolved.
Thu, Nov 24, 12:10 PM · MITK
floca closed T29311: Further observation of the GrowCut segmentation tool on 4D images as Resolved.
Thu, Nov 24, 12:10 PM · MITK (v2023.04)
floca moved T29337: Global Reinit HotKey functionality not there in Mac OSX from Backlog to Others on the MITK (v2023.04) board.
Thu, Nov 24, 12:09 PM · MITK (v2023.04), Cleared, Checklist
floca closed T29346: Level Window Checklist - Level Window slider inconsistent upper/lower bound behavior on mouse clicks. as Resolved.
Thu, Nov 24, 12:07 PM · MITK (v2023.04), Cleared
floca moved T28264: [Segmentation Utilities] Various issues from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 10:39 AM · MITK (v2023.04), Cleared
floca moved T28561: Refactor/Fix mitk::SegmentationInteractor::ChangeActiveLabel from Backlog to Segmentation on the MITK (v2023.04) board.
Thu, Nov 24, 10:39 AM · MITK (v2023.04)

Wed, Nov 23

floca moved T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations from Backlog to Segmentation on the MITK (v2023.04) board.
Wed, Nov 23, 6:16 PM · MITK (v2023.04), Missing Info
floca moved T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable from Backlog to Segmentation on the MITK (v2023.04) board.
Wed, Nov 23, 6:16 PM · MITK (v2023.04), Checklist
floca moved T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps from Backlog to Cycle on the MITK (v2023.04) board.
Wed, Nov 23, 5:48 PM · MITK (v2023.04), Checklist
floca moved T29225: Rule Checker for FlowBench from Backlog to Cycle on the MITK (v2023.04) board.
Wed, Nov 23, 5:48 PM · MITK (v2023.04)
floca moved T29396: [Segmentation] Newly created labelset image has wrong image type from Backlog to In candidates on the MITK (v2023.04) board.
Wed, Nov 23, 5:46 PM · MITK (v2023.04)
floca edited projects for T29396: [Segmentation] Newly created labelset image has wrong image type, added: MITK (v2023.04); removed MITK.
Wed, Nov 23, 5:46 PM · MITK (v2023.04)
floca moved T29416: Segmentation utilities can only handle unsigned char and unsigned short, no other types from Backlog to In candidates on the MITK (v2023.04) board.
Wed, Nov 23, 5:46 PM · Missing Info, MITK (v2023.04)
floca edited projects for T29416: Segmentation utilities can only handle unsigned char and unsigned short, no other types, added: MITK (v2023.04), Missing Info; removed MITK.

Which data has been used to provoke the problem.

Wed, Nov 23, 5:44 PM · Missing Info, MITK (v2023.04)
floca moved T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View from Backlog to Cycle on the MITK (v2023.04) board.
Wed, Nov 23, 3:55 PM · MITK (v2023.04), Restricted Project
floca moved T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label from Backlog to Cycle on the MITK (v2023.04) board.
Wed, Nov 23, 3:55 PM · MITK (v2023.04)
floca moved T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep from Backlog to Cycle on the MITK (v2023.04) board.
Wed, Nov 23, 3:55 PM · MITK (v2023.04)