In contrast to, e.g. 3D Region growing, the thresholding tools overwrite existing labels when clicking "Confirm". Not sure if this is desired, but it is a different behaviour between these tools. We should choose one imho.
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I think this is related to T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox. Here actually the opposite is proposed:
We once added a checkbox to specify if a new segmentation result should overwrite an existing segmentation or if a new segmentation should be created.
This checkbox was added for all 3D tools except for the "Region Growing 3D" tool.
So I will close this task and work on that problem in the mentioned related task.