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User Details
- User Since
- Aug 1 2016, 12:10 PM (199 w, 1 d)
Today
Today
kleina committed rOBSHYPPOPYeeb302b6b1fe: Added CandidateDescriptorWrapper and updated mapping function. Optunity now… (authored by kleina).
Added CandidateDescriptorWrapper and updated mapping function. Optunity now…
Fri, May 15
Fri, May 15
uncommented customized pmap
Wed, May 13
Wed, May 13
Fixed typo.
kleina committed rOBSHYPPOPYc5ef45302a73: loss_function_batch works for now, but only receives one candidate. Have to… (authored by kleina).
loss_function_batch works for now, but only receives one candidate. Have to…
Tue, May 12
Tue, May 12
added some outputs.
added new line at end of file.
kleina committed rOBSHYPPOPY6721f6cf30c6: add custom pmap function for optunitysolver. Overwrite loss_function_batch (authored by kleina).
add custom pmap function for optunitysolver. Overwrite loss_function_batch
kleina committed rOBSHYPPOPYed27cde65b31: Switch to SolverPool in mpiplayground. Try optunity. (authored by kleina).
Switch to SolverPool in mpiplayground. Try optunity.
Fri, May 8
Fri, May 8
Mar 27 2020
Mar 27 2020
Feb 28 2020
Feb 28 2020
kleina added a comment to T27169: In Matchpoint Algorithm Control: Moving and Target point set switch when the RigidICP.3D.default is selected.
I made a short video. Sorry for the powerpoint thingy at the end... was to stupid to figure out how to stop the recording :-P:
Feb 12 2020
Feb 12 2020
kleina committed rOBSHYPPOPY8a356f884293: replaced MPI.COMM_WORLD with self._mpi_comm (authored by kleina).
replaced MPI.COMM_WORLD with self._mpi_comm
Feb 6 2020
Feb 6 2020
kleina committed rOBSHYPPOPY230451b1ac37: Add mpi support for RandomsearchSolver (authored by kleina).
Add mpi support for RandomsearchSolver
added mpi_comm to documentation (2)
added mpi_comm to documentation
Jan 30 2020
Jan 30 2020
kleina committed rOBSHYPPOPYba147fa770ad: Add possibility to pass comm to MPI classes. (authored by kleina).
Add possibility to pass comm to MPI classes.
kleina committed rOBSHYPPOPY818af7645bd2: testing out different loss_functions in MPI context. (authored by kleina).
testing out different loss_functions in MPI context.
removed prototyping code...
kleina committed rOBSHYPPOPY4dca75afb591: make sure to call loss_func_cand_preprocess and loss_func_postprocess correctly… (authored by kleina).
make sure to call loss_func_cand_preprocess and loss_func_postprocess correctly…
kleina committed rOBSHYPPOPYbfa1d6355844: Try both, calling blackbox_function with kwargs and by directly passing… (authored by kleina).
Try both, calling blackbox_function with kwargs and by directly passing…
kleina committed rOBSHYPPOPYceeb9ccaa9a8: Implemented loss_func_cand_preprocess and loss_func_postprocess for… (authored by kleina).
Implemented loss_func_cand_preprocess and loss_func_postprocess for…
kleina committed rOBSHYPPOPYb19055317a61: MPIBlackboxFunction now inherits from BlackBoxFunction and just adds the… (authored by kleina).
MPIBlackboxFunction now inherits from BlackBoxFunction and just adds the…
kleina committed rOBSHYPPOPY7d5a08925371: See T26868: Don't need this anymore. (authored by kleina).
See T26868: Don't need this anymore.
kleina committed rOBSHYPPOPY5c224fb8945b: See T26868. Introduced loss_func_cand_preprocess and loss_func_postprocess. (authored by kleina).
See T26868. Introduced loss_func_cand_preprocess and loss_func_postprocess.
Fix for T26870
code cleanup...
kleina committed rOBSHYPPOPY9f38c4e495a4: Added print in worker to see if it is actually doing things... (authored by kleina).
Added print in worker to see if it is actually doing things...
Dec 5 2019
Dec 5 2019
kleina committed rOBSHYPPOPYff89adc44f40: Updated readme (License and project description). (authored by kleina).
Updated readme (License and project description).
Nov 27 2019
Nov 27 2019
Nov 21 2019
Nov 21 2019
kleina committed rOBSHYPPOPYf73700a66405: Actually using the introduces loss_function_call_batch. (authored by kleina).
Actually using the introduces loss_function_call_batch.
kleina committed rOBSHYPPOPY5c477913132f: Introduced loss_function_call_batch. Each solver lib might need some special… (authored by kleina).
Introduced loss_function_call_batch. Each solver lib might need some special…
updated mpiplayground.
kleina committed rOBSHYPPOPYbb1cfb13317d: CandidateDescriptor in extra file (actual code this time). (authored by kleina).
CandidateDescriptor in extra file (actual code this time).
kleina committed rOBSHYPPOPYc61e3ab15d97: Code cleanup of MPIBlackboxFunction. (authored by kleina).
Code cleanup of MPIBlackboxFunction.
kleina committed rOBSHYPPOPY3fd379043e07: Cleanup of HyppopySolver. loss_function uses loss_function_batch internally now. (authored by kleina).
Cleanup of HyppopySolver. loss_function uses loss_function_batch internally now.
Removed some TODOs and comments.
kleina committed rOBSHYPPOPY755be657e49d: Moved CandidateDescriptor to own file. (authored by kleina).
Moved CandidateDescriptor to own file.
kleina committed rOBSHYPPOPY87002effbb4c: Cleanup of MPISolverWrapper. Removed some TODOs and comments. Worker now also… (authored by kleina).
Cleanup of MPISolverWrapper. Removed some TODOs and comments. Worker now also…
Processed some comments.
kleina committed rOBSHYPPOPYe722f3fd81d2: reimplemented call_batch in MPIBlackboxFunction. (authored by kleina).
reimplemented call_batch in MPIBlackboxFunction.
kleina committed rOBSHYPPOPY7c48ce825346: Introduced CandidateDescriptor in Gridsearch_solver. Fixed typo in error… (authored by kleina).
Introduced CandidateDescriptor in Gridsearch_solver. Fixed typo in error…
kleina committed rOBSHYPPOPYcaa03252837f: introduced CandidateDescriptor and changed loss_function_batch() according to… (authored by kleina).
introduced CandidateDescriptor and changed loss_function_batch() according to…
Nov 5 2019
Nov 5 2019
get_candidate_list is static now
kleina committed rOBSHYPPOPY9fef26354805: Had to change some member initialization which was originally done in the run… (authored by kleina).
Had to change some member initialization which was originally done in the run…
kleina committed rOBSHYPPOPY749e409d0b62: added mpi4py to the project requirements. (authored by kleina).
added mpi4py to the project requirements.
kleina committed rOBSHYPPOPY5501c757a11e: Added method get_candidate_list to GridsearchSolver. At the moment, this is the… (authored by kleina).
Added method get_candidate_list to GridsearchSolver. At the moment, this is the…
kleina committed rOBSHYPPOPYf941968f514d: Added MPIBlackboxFunction. At the moment there is not really MPI stuff… (authored by kleina).
Added MPIBlackboxFunction. At the moment there is not really MPI stuff…
kleina committed rOBSHYPPOPYe066214ed9b1: Added MPI_TAGS enums, that are used for message sending. More convenient than… (authored by kleina).
Added MPI_TAGS enums, that are used for message sending. More convenient than…
kleina committed rOBSHYPPOPYc35132c17c3a: Added MPISolverwrapper.py. This class wraps a solver and enables it to use mpi. (authored by kleina).
Added MPISolverwrapper.py. This class wraps a solver and enables it to use mpi.
kleina committed rOBSHYPPOPYfe290b641e94: added mpiplayground.py for prototyping of mpi stuff. (authored by kleina).
added mpiplayground.py for prototyping of mpi stuff.
Sep 11 2019
Sep 11 2019
Aug 30 2019
Aug 30 2019
Jul 31 2019
Jul 31 2019
kleina moved T26439: Extending embeddings.py with gensen and skipthought from In Progress to Review/Discussion on the NLP board.
Jul 11 2019
Jul 11 2019
According to Nina this is kind of a dealbreaker for her and really slows her down. I would give this one a high priority in BlackSwan context.
Jul 3 2019
Jul 3 2019
Here are the DLLs we used for the BlackSwan demo.
kleina added a comment to T26449: XNAT connection failes due to missing OpenSSL connections.
This issue can be solved by copying the following DLLs to the exe path of the workbench:
kleina triaged T26449: XNAT connection failes due to missing OpenSSL connections as Normal priority.
Jun 7 2019
Jun 7 2019
May 29 2019
May 29 2019
kleina added a comment to T26029: [image statistics plugin] 4D image + 4D segmentation as mask does not work.
Yeah, we did... to be honest, I don't know if it is merged yet. @kausch can you please check this?
May 24 2019
May 24 2019
May 14 2019
May 14 2019
kleina added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.
Ok, I tested it on my current developing build, which is branched off of master from 2019-04-29 (a0ba9d263118bc2df2aa922c124c3db57acbd2dc). I can reproduce the error as described in the description. So I guess to answer your question @kislinsk: The status is "still open".
May 13 2019
May 13 2019
kleina added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.
I forgot to enable the segmentation plugin... I'll test it tomorrow.
kleina added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.
I can reproduce it. I did exactly the steps in the task description. I used MITK.2018.4.0 installer. I'll check on a (more or less) current master.
kleina added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.
Wait for it...
May 9 2019
May 9 2019
May 7 2019
May 7 2019
removed trained net from qrc
kleina committed rMITKf885a64b28f2: The trained net can now be loaded via a dialog. (authored by kleina).
The trained net can now be loaded via a dialog.
kleina committed rMITKfea1ce69c335: updated icon now dealing with image sizes that are not a power of 2 (authored by kleina).
updated icon now dealing with image sizes that are not a power of 2
kleina committed rMITK9dab7ee2f261: resize image, if # of slices not devidable by batch_size (authored by kleina).
resize image, if # of slices not devidable by batch_size
May 6 2019
May 6 2019
Updated some log messages.
kleina committed rMITKd139633e4e83: Some code cleanup and const string definition (authored by kleina).
Some code cleanup and const string definition
add predicate helper for image selection
Changed selection to comboBox way...
May 3 2019
May 3 2019
Minor changes.
Added python script to resources
May 2 2019
May 2 2019
kleina committed rMITK5947066faddd: Bone segmantation using CNN in MITK. First try... (authored by kleina).
Bone segmantation using CNN in MITK. First try...
Feb 1 2019
Feb 1 2019
Jan 18 2019
Jan 18 2019
Merge branch 'T25683-chart_example_linux'
ignore unused parameter
kleina added a comment to T25683: Chart Example Plugin.
Pushed new branch T25683-chart_example_linux.
Jan 17 2019
Jan 17 2019
Dec 21 2018
Dec 21 2018
kleina committed rMITK85f003cc383e: Merge branch 'T22414-codeAnalysisCppcheck201812' (authored by kleina).
Merge branch 'T22414-codeAnalysisCppcheck201812'
kleina committed rMITKdceebea28ff8: Changes initialization order in constructor to prevent warnings. (authored by kleina).
Changes initialization order in constructor to prevent warnings.
added plugin for bone seg
Nov 27 2018
Nov 27 2018
Nov 26 2018
Nov 26 2018
Nov 23 2018
Nov 23 2018
Nov 20 2018
Nov 20 2018
kleina added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.
kleina added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.
I do not think, that the subchart feature is a blocker or even critical. It was very easy to implement with C3 and I personally liked the idea as described above. I assume there is something to achieve that in plotly as well? I'd be happy to discuss this with you in person.
Nov 19 2018
Nov 19 2018
kleina added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.
The idea behind that feature was, that it should be obvious to the user, that he is only looking at a part of the data. A zoomed view can lead to misinterpretation if the user is not aware of it. At least that is what I thought when I added that feature.
Oct 23 2018
Oct 23 2018
Sep 14 2018
Sep 14 2018
kleina added a comment to T23104: Deprecate QmitkPlotWidget.
I created a subtask. We'll look into this.