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kleina (André Klein)
SIDT apprentice

Projects (10)

User Details

User Since
Aug 1 2016, 12:10 PM (199 w, 1 d)

Recent Activity

Today

kleina committed rOBSHYPPOPYeeb302b6b1fe: Added CandidateDescriptorWrapper and updated mapping function. Optunity now… (authored by kleina).
Added CandidateDescriptorWrapper and updated mapping function. Optunity now…
Tue, May 26, 5:13 PM

Fri, May 15

kleina committed rOBSHYPPOPY47e2639dcaee: uncommented customized pmap (authored by kleina).
uncommented customized pmap
Fri, May 15, 1:50 PM

Wed, May 13

kleina committed rOBSHYPPOPY24436615c9c6: Fixed typo. (authored by kleina).
Fixed typo.
Wed, May 13, 10:34 AM
kleina committed rOBSHYPPOPYc5ef45302a73: loss_function_batch works for now, but only receives one candidate. Have to… (authored by kleina).
loss_function_batch works for now, but only receives one candidate. Have to…
Wed, May 13, 10:34 AM

Tue, May 12

kleina committed rOBSHYPPOPY9fe2f8e9cfe3: added some outputs. (authored by kleina).
added some outputs.
Tue, May 12, 7:21 PM
kleina committed rOBSHYPPOPY8bd563379684: added new line at end of file. (authored by kleina).
added new line at end of file.
Tue, May 12, 7:21 PM
kleina committed rOBSHYPPOPY6721f6cf30c6: add custom pmap function for optunitysolver. Overwrite loss_function_batch (authored by kleina).
add custom pmap function for optunitysolver. Overwrite loss_function_batch
Tue, May 12, 7:21 PM
kleina committed rOBSHYPPOPYed27cde65b31: Switch to SolverPool in mpiplayground. Try optunity. (authored by kleina).
Switch to SolverPool in mpiplayground. Try optunity.
Tue, May 12, 7:21 PM

Fri, May 8

kleina triaged T27387: Link in Documentation wrong as Normal priority.
Fri, May 8, 3:05 PM · MITK

Mar 27 2020

kleina added a member for Deep Learning: schellem.
Mar 27 2020, 2:21 PM

Feb 28 2020

kleina updated subscribers of T27169: In Matchpoint Algorithm Control: Moving and Target point set switch when the RigidICP.3D.default is selected.
Feb 28 2020, 4:32 PM · MITK
kleina added a comment to T27169: In Matchpoint Algorithm Control: Moving and Target point set switch when the RigidICP.3D.default is selected.

I made a short video. Sorry for the powerpoint thingy at the end... was to stupid to figure out how to stop the recording :-P:

Feb 28 2020, 4:30 PM · MITK

Feb 12 2020

kleina committed rOBSHYPPOPY8a356f884293: replaced MPI.COMM_WORLD with self._mpi_comm (authored by kleina).
replaced MPI.COMM_WORLD with self._mpi_comm
Feb 12 2020, 9:58 AM

Feb 6 2020

kleina committed rOBSHYPPOPY230451b1ac37: Add mpi support for RandomsearchSolver (authored by kleina).
Add mpi support for RandomsearchSolver
Feb 6 2020, 5:00 PM
kleina committed rOBSHYPPOPY828762fd0573: added mpi_comm to documentation (2) (authored by kleina).
added mpi_comm to documentation (2)
Feb 6 2020, 5:00 PM
kleina committed rOBSHYPPOPY31e9f9b0e858: added mpi_comm to documentation (authored by kleina).
added mpi_comm to documentation
Feb 6 2020, 5:00 PM

Jan 30 2020

kleina committed rOBSHYPPOPYba147fa770ad: Add possibility to pass comm to MPI classes. (authored by kleina).
Add possibility to pass comm to MPI classes.
Jan 30 2020, 3:24 PM
kleina committed rOBSHYPPOPY818af7645bd2: testing out different loss_functions in MPI context. (authored by kleina).
testing out different loss_functions in MPI context.
Jan 30 2020, 3:24 PM
kleina committed rOBSHYPPOPYb3b1fc6637cb: removed prototyping code... (authored by kleina).
removed prototyping code...
Jan 30 2020, 3:24 PM
kleina committed rOBSHYPPOPY4dca75afb591: make sure to call loss_func_cand_preprocess and loss_func_postprocess correctly… (authored by kleina).
make sure to call loss_func_cand_preprocess and loss_func_postprocess correctly…
Jan 30 2020, 3:24 PM
kleina committed rOBSHYPPOPYbfa1d6355844: Try both, calling blackbox_function with kwargs and by directly passing… (authored by kleina).
Try both, calling blackbox_function with kwargs and by directly passing…
Jan 30 2020, 3:24 PM
kleina committed rOBSHYPPOPYceeb9ccaa9a8: Implemented loss_func_cand_preprocess and loss_func_postprocess for… (authored by kleina).
Implemented loss_func_cand_preprocess and loss_func_postprocess for…
Jan 30 2020, 3:24 PM
kleina committed rOBSHYPPOPYb19055317a61: MPIBlackboxFunction now inherits from BlackBoxFunction and just adds the… (authored by kleina).
MPIBlackboxFunction now inherits from BlackBoxFunction and just adds the…
Jan 30 2020, 3:24 PM
kleina committed rOBSHYPPOPY7d5a08925371: See T26868: Don't need this anymore. (authored by kleina).
See T26868: Don't need this anymore.
Jan 30 2020, 3:24 PM
kleina committed rOBSHYPPOPY5c224fb8945b: See T26868. Introduced loss_func_cand_preprocess and loss_func_postprocess. (authored by kleina).
See T26868. Introduced loss_func_cand_preprocess and loss_func_postprocess.
Jan 30 2020, 3:24 PM
kleina committed rOBSHYPPOPYa153ed802dc6: Fix for T26870 (authored by kleina).
Fix for T26870
Jan 30 2020, 3:24 PM
kleina committed rOBSHYPPOPY18d366ef41ad: code cleanup... (authored by kleina).
code cleanup...
Jan 30 2020, 3:24 PM
kleina committed rOBSHYPPOPY9f38c4e495a4: Added print in worker to see if it is actually doing things... (authored by kleina).
Added print in worker to see if it is actually doing things...
Jan 30 2020, 3:24 PM

Dec 5 2019

kleina committed rOBSHYPPOPYff89adc44f40: Updated readme (License and project description). (authored by kleina).
Updated readme (License and project description).
Dec 5 2019, 3:19 PM

Nov 27 2019

kleina added a member for Deep Learning: brunkk.
Nov 27 2019, 11:13 AM
kleina added a member for MIA: brunkk.
Nov 27 2019, 11:12 AM

Nov 21 2019

kleina committed rOBSHYPPOPYf73700a66405: Actually using the introduces loss_function_call_batch. (authored by kleina).
Actually using the introduces loss_function_call_batch.
Nov 21 2019, 2:11 PM
kleina committed rOBSHYPPOPY5c477913132f: Introduced loss_function_call_batch. Each solver lib might need some special… (authored by kleina).
Introduced loss_function_call_batch. Each solver lib might need some special…
Nov 21 2019, 2:11 PM
kleina committed rOBSHYPPOPY1c7ce1f48358: updated mpiplayground. (authored by kleina).
updated mpiplayground.
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPYbb1cfb13317d: CandidateDescriptor in extra file (actual code this time). (authored by kleina).
CandidateDescriptor in extra file (actual code this time).
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPYc61e3ab15d97: Code cleanup of MPIBlackboxFunction. (authored by kleina).
Code cleanup of MPIBlackboxFunction.
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPY3fd379043e07: Cleanup of HyppopySolver. loss_function uses loss_function_batch internally now. (authored by kleina).
Cleanup of HyppopySolver. loss_function uses loss_function_batch internally now.
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPYf09a89dc7736: Removed some TODOs and comments. (authored by kleina).
Removed some TODOs and comments.
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPY755be657e49d: Moved CandidateDescriptor to own file. (authored by kleina).
Moved CandidateDescriptor to own file.
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPY87002effbb4c: Cleanup of MPISolverWrapper. Removed some TODOs and comments. Worker now also… (authored by kleina).
Cleanup of MPISolverWrapper. Removed some TODOs and comments. Worker now also…
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPYa8ef7d01492f: Processed some comments. (authored by kleina).
Processed some comments.
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPYe722f3fd81d2: reimplemented call_batch in MPIBlackboxFunction. (authored by kleina).
reimplemented call_batch in MPIBlackboxFunction.
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPY7c48ce825346: Introduced CandidateDescriptor in Gridsearch_solver. Fixed typo in error… (authored by kleina).
Introduced CandidateDescriptor in Gridsearch_solver. Fixed typo in error…
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPYcaa03252837f: introduced CandidateDescriptor and changed loss_function_batch() according to… (authored by kleina).
introduced CandidateDescriptor and changed loss_function_batch() according to…
Nov 21 2019, 1:50 PM

Nov 5 2019

kleina committed rOBSHYPPOPY7aafa3c76728: get_candidate_list is static now (authored by kleina).
get_candidate_list is static now
Nov 5 2019, 2:11 PM
kleina committed rOBSHYPPOPY9fef26354805: Had to change some member initialization which was originally done in the run… (authored by kleina).
Had to change some member initialization which was originally done in the run…
Nov 5 2019, 2:11 PM
kleina committed rOBSHYPPOPY749e409d0b62: added mpi4py to the project requirements. (authored by kleina).
added mpi4py to the project requirements.
Nov 5 2019, 2:11 PM
kleina committed rOBSHYPPOPY5501c757a11e: Added method get_candidate_list to GridsearchSolver. At the moment, this is the… (authored by kleina).
Added method get_candidate_list to GridsearchSolver. At the moment, this is the…
Nov 5 2019, 2:11 PM
kleina committed rOBSHYPPOPYf941968f514d: Added MPIBlackboxFunction. At the moment there is not really MPI stuff… (authored by kleina).
Added MPIBlackboxFunction. At the moment there is not really MPI stuff…
Nov 5 2019, 2:11 PM
kleina committed rOBSHYPPOPYe066214ed9b1: Added MPI_TAGS enums, that are used for message sending. More convenient than… (authored by kleina).
Added MPI_TAGS enums, that are used for message sending. More convenient than…
Nov 5 2019, 2:11 PM
kleina committed rOBSHYPPOPYc35132c17c3a: Added MPISolverwrapper.py. This class wraps a solver and enables it to use mpi. (authored by kleina).
Added MPISolverwrapper.py. This class wraps a solver and enables it to use mpi.
Nov 5 2019, 2:11 PM
kleina committed rOBSHYPPOPYfe290b641e94: added mpiplayground.py for prototyping of mpi stuff. (authored by kleina).
added mpiplayground.py for prototyping of mpi stuff.
Nov 5 2019, 2:11 PM

Sep 11 2019

kleina added a member for Deep Learning: graf.
Sep 11 2019, 10:52 AM

Aug 30 2019

kleina added a member for Deep Learning: t543a.
Aug 30 2019, 9:49 AM

Jul 31 2019

kleina moved T26439: Extending embeddings.py with gensen and skipthought from In Progress to Review/Discussion on the NLP board.
Jul 31 2019, 9:49 AM · NLP

Jul 11 2019

kleina triaged T26486: PACS mouse mode does not allow scrolling with mouse wheel as High priority.

According to Nina this is kind of a dealbreaker for her and really slows her down. I would give this one a high priority in BlackSwan context.

Jul 11 2019, 11:49 AM · Restricted Project, MITK

Jul 3 2019

kleina closed T26449: XNAT connection failes due to missing OpenSSL connections as Resolved.

Here are the DLLs we used for the BlackSwan demo.

Jul 3 2019, 3:10 PM · MITK
kleina added a comment to T26449: XNAT connection failes due to missing OpenSSL connections.

This issue can be solved by copying the following DLLs to the exe path of the workbench:

Jul 3 2019, 3:08 PM · MITK
kleina triaged T26449: XNAT connection failes due to missing OpenSSL connections as Normal priority.
Jul 3 2019, 3:06 PM · MITK

Jun 7 2019

kleina added a member for MIA: j562r.
Jun 7 2019, 10:58 AM
kleina added a member for Deep Learning: j562r.
Jun 7 2019, 10:57 AM

May 29 2019

kleina added a comment to T26029: [image statistics plugin] 4D image + 4D segmentation as mask does not work.

Yeah, we did... to be honest, I don't know if it is merged yet. @kausch can you please check this?

May 29 2019, 11:54 AM · Restricted Project, MITK

May 24 2019

kleina added a member for MIA: schererj.
May 24 2019, 3:15 PM
kleina added a member for MIA: laie.
May 24 2019, 2:20 PM
kleina updated the image for MIA from F792370: profile to F1370452: profile.
May 24 2019, 1:39 PM

May 14 2019

kleina added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.

Ok, I tested it on my current developing build, which is branched off of master from 2019-04-29 (a0ba9d263118bc2df2aa922c124c3db57acbd2dc). I can reproduce the error as described in the description. So I guess to answer your question @kislinsk: The status is "still open".

May 14 2019, 10:39 AM · MITK

May 13 2019

kleina added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.

I forgot to enable the segmentation plugin... I'll test it tomorrow.

May 13 2019, 4:49 PM · MITK
kleina added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.

I can reproduce it. I did exactly the steps in the task description. I used MITK.2018.4.0 installer. I'll check on a (more or less) current master.

May 13 2019, 4:33 PM · MITK
kleina added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.

Wait for it...

May 13 2019, 4:30 PM · MITK

May 9 2019

kleina updated kleina.
May 9 2019, 11:24 AM

May 7 2019

kleina committed rMITK9680b016958e: removed trained net from qrc (authored by kleina).
removed trained net from qrc
May 7 2019, 4:44 PM
kleina committed rMITKf885a64b28f2: The trained net can now be loaded via a dialog. (authored by kleina).
The trained net can now be loaded via a dialog.
May 7 2019, 4:35 PM
kleina committed rMITKfea1ce69c335: updated icon now dealing with image sizes that are not a power of 2 (authored by kleina).
updated icon now dealing with image sizes that are not a power of 2
May 7 2019, 3:55 PM
kleina committed rMITK9dab7ee2f261: resize image, if # of slices not devidable by batch_size (authored by kleina).
resize image, if # of slices not devidable by batch_size
May 7 2019, 1:57 PM

May 6 2019

kleina committed rMITK904aac229739: Updated some log messages. (authored by kleina).
Updated some log messages.
May 6 2019, 3:13 PM
kleina committed rMITKd139633e4e83: Some code cleanup and const string definition (authored by kleina).
Some code cleanup and const string definition
May 6 2019, 1:54 PM
kleina committed rMITK89e2fa29e259: add predicate helper for image selection (authored by kleina).
add predicate helper for image selection
May 6 2019, 11:34 AM
kleina committed rMITKa15c317c423a: Changed selection to comboBox way... (authored by kleina).
Changed selection to comboBox way...
May 6 2019, 11:24 AM

May 3 2019

kleina committed rMITK375aecbac54e: Minor changes. (authored by kleina).
Minor changes.
May 3 2019, 6:42 PM
kleina committed rMITK8dc831bd480d: Added python script to resources (authored by kleina).
Added python script to resources
May 3 2019, 5:16 PM

May 2 2019

kleina committed rMITK5947066faddd: Bone segmantation using CNN in MITK. First try... (authored by kleina).
Bone segmantation using CNN in MITK. First try...
May 2 2019, 1:27 PM

Feb 1 2019

kleina added a member for Deep Learning: ramien.
Feb 1 2019, 1:52 PM
kleina added a member for Deep Learning: menjivar.
Feb 1 2019, 10:14 AM

Jan 18 2019

kleina committed rMITKadf2b5400f7a: Merge branch 'T25683-chart_example_linux' (authored by kleina).
Merge branch 'T25683-chart_example_linux'
Jan 18 2019, 2:28 PM
kleina committed rMITKf8505f3ec679: ignore unused parameter (authored by kleina).
ignore unused parameter
Jan 18 2019, 2:26 PM
kleina added a comment to T25683: Chart Example Plugin.

Pushed new branch T25683-chart_example_linux.

Jan 18 2019, 2:26 PM · MITK
kleina added members for Deep Learning: k656s, aguilera.
Jan 18 2019, 12:00 PM

Jan 17 2019

kleina triaged T25853: Auto-start does not work with visdom version 0.1.8.8 as Normal priority.
Jan 17 2019, 1:39 PM · trixi

Dec 21 2018

kleina committed rMITK85f003cc383e: Merge branch 'T22414-codeAnalysisCppcheck201812' (authored by kleina).
Merge branch 'T22414-codeAnalysisCppcheck201812'
Dec 21 2018, 3:25 PM
kleina committed rMITKdceebea28ff8: Changes initialization order in constructor to prevent warnings. (authored by kleina).
Changes initialization order in constructor to prevent warnings.
Dec 21 2018, 3:24 PM
kleina committed rMITK5dcd452ff034: added plugin for bone seg (authored by kleina).
added plugin for bone seg
Dec 21 2018, 2:50 PM

Nov 27 2018

kleina added a comment to T25683: Chart Example Plugin.

Nice!

Nov 27 2018, 10:35 AM · MITK

Nov 26 2018

kleina triaged T25683: Chart Example Plugin as Normal priority.
Nov 26 2018, 1:43 PM · MITK

Nov 23 2018

kleina added a member for Deep Learning: greinerm.
Nov 23 2018, 10:38 AM

Nov 20 2018

kleina added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.

Nov 20 2018, 11:50 AM · Noteworthy, Restricted Project, MITK
kleina added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.

I do not think, that the subchart feature is a blocker or even critical. It was very easy to implement with C3 and I personally liked the idea as described above. I assume there is something to achieve that in plotly as well? I'd be happy to discuss this with you in person.

Nov 20 2018, 11:41 AM · Noteworthy, Restricted Project, MITK

Nov 19 2018

kleina added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.

The idea behind that feature was, that it should be obvious to the user, that he is only looking at a part of the data. A zoomed view can lead to misinterpretation if the user is not aware of it. At least that is what I thought when I added that feature.

Nov 19 2018, 4:27 PM · Noteworthy, Restricted Project, MITK

Oct 23 2018

kleina triaged T25555: Use Comma as delimiter when copying to clipboard as Low priority.
Oct 23 2018, 4:28 PM · MITK

Sep 14 2018

kleina added a comment to T23104: Deprecate QmitkPlotWidget.

I created a subtask. We'll look into this.

Sep 14 2018, 2:50 PM · Restricted Project, MITK
kleina triaged T25437: Evaluate to switch from C3.js to Plotly.js as Normal priority.
Sep 14 2018, 2:50 PM · Noteworthy, Restricted Project, MITK