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kleina (André Klein)
SIDT apprentice

Projects (10)

User Details

User Since
Aug 1 2016, 12:10 PM (181 w, 2 d)

Recent Activity

Dec 5 2019

kleina committed rOBSHYPPOPYff89adc44f40: Updated readme (License and project description). (authored by kleina).
Updated readme (License and project description).
Dec 5 2019, 3:19 PM

Nov 27 2019

kleina added a member for Deep Learning: brunkk.
Nov 27 2019, 11:13 AM
kleina added a member for MIA: brunkk.
Nov 27 2019, 11:12 AM

Nov 21 2019

kleina committed rOBSHYPPOPYf73700a66405: Actually using the introduces loss_function_call_batch. (authored by kleina).
Actually using the introduces loss_function_call_batch.
Nov 21 2019, 2:11 PM
kleina committed rOBSHYPPOPY5c477913132f: Introduced loss_function_call_batch. Each solver lib might need some special… (authored by kleina).
Introduced loss_function_call_batch. Each solver lib might need some special…
Nov 21 2019, 2:11 PM
kleina committed rOBSHYPPOPY1c7ce1f48358: updated mpiplayground. (authored by kleina).
updated mpiplayground.
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPYbb1cfb13317d: CandidateDescriptor in extra file (actual code this time). (authored by kleina).
CandidateDescriptor in extra file (actual code this time).
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPYc61e3ab15d97: Code cleanup of MPIBlackboxFunction. (authored by kleina).
Code cleanup of MPIBlackboxFunction.
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPY3fd379043e07: Cleanup of HyppopySolver. loss_function uses loss_function_batch internally now. (authored by kleina).
Cleanup of HyppopySolver. loss_function uses loss_function_batch internally now.
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPYf09a89dc7736: Removed some TODOs and comments. (authored by kleina).
Removed some TODOs and comments.
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPY755be657e49d: Moved CandidateDescriptor to own file. (authored by kleina).
Moved CandidateDescriptor to own file.
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPY87002effbb4c: Cleanup of MPISolverWrapper. Removed some TODOs and comments. Worker now also… (authored by kleina).
Cleanup of MPISolverWrapper. Removed some TODOs and comments. Worker now also…
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPYa8ef7d01492f: Processed some comments. (authored by kleina).
Processed some comments.
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPYe722f3fd81d2: reimplemented call_batch in MPIBlackboxFunction. (authored by kleina).
reimplemented call_batch in MPIBlackboxFunction.
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPY7c48ce825346: Introduced CandidateDescriptor in Gridsearch_solver. Fixed typo in error… (authored by kleina).
Introduced CandidateDescriptor in Gridsearch_solver. Fixed typo in error…
Nov 21 2019, 1:50 PM
kleina committed rOBSHYPPOPYcaa03252837f: introduced CandidateDescriptor and changed loss_function_batch() according to… (authored by kleina).
introduced CandidateDescriptor and changed loss_function_batch() according to…
Nov 21 2019, 1:50 PM

Nov 5 2019

kleina committed rOBSHYPPOPY7aafa3c76728: get_candidate_list is static now (authored by kleina).
get_candidate_list is static now
Nov 5 2019, 2:11 PM
kleina committed rOBSHYPPOPY9fef26354805: Had to change some member initialization which was originally done in the run… (authored by kleina).
Had to change some member initialization which was originally done in the run…
Nov 5 2019, 2:11 PM
kleina committed rOBSHYPPOPY749e409d0b62: added mpi4py to the project requirements. (authored by kleina).
added mpi4py to the project requirements.
Nov 5 2019, 2:11 PM
kleina committed rOBSHYPPOPY5501c757a11e: Added method get_candidate_list to GridsearchSolver. At the moment, this is the… (authored by kleina).
Added method get_candidate_list to GridsearchSolver. At the moment, this is the…
Nov 5 2019, 2:11 PM
kleina committed rOBSHYPPOPYf941968f514d: Added MPIBlackboxFunction. At the moment there is not really MPI stuff… (authored by kleina).
Added MPIBlackboxFunction. At the moment there is not really MPI stuff…
Nov 5 2019, 2:11 PM
kleina committed rOBSHYPPOPYe066214ed9b1: Added MPI_TAGS enums, that are used for message sending. More convenient than… (authored by kleina).
Added MPI_TAGS enums, that are used for message sending. More convenient than…
Nov 5 2019, 2:11 PM
kleina committed rOBSHYPPOPYc35132c17c3a: Added MPISolverwrapper.py. This class wraps a solver and enables it to use mpi. (authored by kleina).
Added MPISolverwrapper.py. This class wraps a solver and enables it to use mpi.
Nov 5 2019, 2:11 PM
kleina committed rOBSHYPPOPYfe290b641e94: added mpiplayground.py for prototyping of mpi stuff. (authored by kleina).
added mpiplayground.py for prototyping of mpi stuff.
Nov 5 2019, 2:11 PM

Sep 11 2019

kleina added a member for Deep Learning: graf.
Sep 11 2019, 10:52 AM

Aug 30 2019

kleina added a member for Deep Learning: t543a.
Aug 30 2019, 9:49 AM

Jul 31 2019

kleina moved T26439: Extending embeddings.py with gensen and skipthought from In Progress to Review/Discussion on the NLP board.
Jul 31 2019, 9:49 AM · NLP

Jul 11 2019

kleina triaged T26486: PACS mouse mode does not allow scrolling with mouse wheel as High priority.

According to Nina this is kind of a dealbreaker for her and really slows her down. I would give this one a high priority in BlackSwan context.

Jul 11 2019, 11:49 AM · Restricted Project, MITK

Jul 3 2019

kleina closed T26449: XNAT connection failes due to missing OpenSSL connections as Resolved.

Here are the DLLs we used for the BlackSwan demo.

Jul 3 2019, 3:10 PM · MITK
kleina added a comment to T26449: XNAT connection failes due to missing OpenSSL connections.

This issue can be solved by copying the following DLLs to the exe path of the workbench:

Jul 3 2019, 3:08 PM · MITK
kleina triaged T26449: XNAT connection failes due to missing OpenSSL connections as Normal priority.
Jul 3 2019, 3:06 PM · MITK

Jun 7 2019

kleina added a member for MIA: j562r.
Jun 7 2019, 10:58 AM
kleina added a member for Deep Learning: j562r.
Jun 7 2019, 10:57 AM

May 29 2019

kleina added a comment to T26029: [image statistics plugin] 4D image + 4D segmentation as mask does not work.

Yeah, we did... to be honest, I don't know if it is merged yet. @kausch can you please check this?

May 29 2019, 11:54 AM · Restricted Project, MITK

May 24 2019

kleina added a member for MIA: schererj.
May 24 2019, 3:15 PM
kleina added a member for MIA: laie.
May 24 2019, 2:20 PM
kleina updated the image for MIA from F792370: profile to F1370452: profile.
May 24 2019, 1:39 PM

May 14 2019

kleina added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.

Ok, I tested it on my current developing build, which is branched off of master from 2019-04-29 (a0ba9d263118bc2df2aa922c124c3db57acbd2dc). I can reproduce the error as described in the description. So I guess to answer your question @kislinsk: The status is "still open".

May 14 2019, 10:39 AM · MITK (2018-04-4)

May 13 2019

kleina added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.

I forgot to enable the segmentation plugin... I'll test it tomorrow.

May 13 2019, 4:49 PM · MITK (2018-04-4)
kleina added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.

I can reproduce it. I did exactly the steps in the task description. I used MITK.2018.4.0 installer. I'll check on a (more or less) current master.

May 13 2019, 4:33 PM · MITK (2018-04-4)
kleina added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.

Wait for it...

May 13 2019, 4:30 PM · MITK (2018-04-4)

May 9 2019

kleina updated kleina.
May 9 2019, 11:24 AM

May 7 2019

kleina committed rMITK9680b016958e: removed trained net from qrc (authored by kleina).
removed trained net from qrc
May 7 2019, 4:44 PM
kleina committed rMITKf885a64b28f2: The trained net can now be loaded via a dialog. (authored by kleina).
The trained net can now be loaded via a dialog.
May 7 2019, 4:35 PM
kleina committed rMITKfea1ce69c335: updated icon now dealing with image sizes that are not a power of 2 (authored by kleina).
updated icon now dealing with image sizes that are not a power of 2
May 7 2019, 3:55 PM
kleina committed rMITK9dab7ee2f261: resize image, if # of slices not devidable by batch_size (authored by kleina).
resize image, if # of slices not devidable by batch_size
May 7 2019, 1:57 PM

May 6 2019

kleina committed rMITK904aac229739: Updated some log messages. (authored by kleina).
Updated some log messages.
May 6 2019, 3:13 PM
kleina committed rMITKd139633e4e83: Some code cleanup and const string definition (authored by kleina).
Some code cleanup and const string definition
May 6 2019, 1:54 PM
kleina committed rMITK89e2fa29e259: add predicate helper for image selection (authored by kleina).
add predicate helper for image selection
May 6 2019, 11:34 AM
kleina committed rMITKa15c317c423a: Changed selection to comboBox way... (authored by kleina).
Changed selection to comboBox way...
May 6 2019, 11:24 AM

May 3 2019

kleina committed rMITK375aecbac54e: Minor changes. (authored by kleina).
Minor changes.
May 3 2019, 6:42 PM
kleina committed rMITK8dc831bd480d: Added python script to resources (authored by kleina).
Added python script to resources
May 3 2019, 5:16 PM

May 2 2019

kleina committed rMITK5947066faddd: Bone segmantation using CNN in MITK. First try... (authored by kleina).
Bone segmantation using CNN in MITK. First try...
May 2 2019, 1:27 PM

Feb 1 2019

kleina added a member for Deep Learning: ramien.
Feb 1 2019, 1:52 PM
kleina added a member for Deep Learning: menjivar.
Feb 1 2019, 10:14 AM

Jan 18 2019

kleina committed rMITKadf2b5400f7a: Merge branch 'T25683-chart_example_linux' (authored by kleina).
Merge branch 'T25683-chart_example_linux'
Jan 18 2019, 2:28 PM
kleina committed rMITKf8505f3ec679: ignore unused parameter (authored by kleina).
ignore unused parameter
Jan 18 2019, 2:26 PM
kleina added a comment to T25683: Chart Example Plugin.

Pushed new branch T25683-chart_example_linux.

Jan 18 2019, 2:26 PM · MITK
kleina added members for Deep Learning: k656s, aguilera.
Jan 18 2019, 12:00 PM

Jan 17 2019

kleina triaged T25853: Auto-start does not work with visdom version 0.1.8.8 as Normal priority.
Jan 17 2019, 1:39 PM · trixi

Dec 21 2018

kleina committed rMITK85f003cc383e: Merge branch 'T22414-codeAnalysisCppcheck201812' (authored by kleina).
Merge branch 'T22414-codeAnalysisCppcheck201812'
Dec 21 2018, 3:25 PM
kleina committed rMITKdceebea28ff8: Changes initialization order in constructor to prevent warnings. (authored by kleina).
Changes initialization order in constructor to prevent warnings.
Dec 21 2018, 3:24 PM
kleina committed rMITK5dcd452ff034: added plugin for bone seg (authored by kleina).
added plugin for bone seg
Dec 21 2018, 2:50 PM

Nov 27 2018

kleina added a comment to T25683: Chart Example Plugin.

Nice!

Nov 27 2018, 10:35 AM · MITK

Nov 26 2018

kleina triaged T25683: Chart Example Plugin as Normal priority.
Nov 26 2018, 1:43 PM · MITK

Nov 23 2018

kleina added a member for Deep Learning: greinerm.
Nov 23 2018, 10:38 AM

Nov 20 2018

kleina added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.

Nov 20 2018, 11:50 AM · Noteworthy, Restricted Project, MITK
kleina added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.

I do not think, that the subchart feature is a blocker or even critical. It was very easy to implement with C3 and I personally liked the idea as described above. I assume there is something to achieve that in plotly as well? I'd be happy to discuss this with you in person.

Nov 20 2018, 11:41 AM · Noteworthy, Restricted Project, MITK

Nov 19 2018

kleina added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.

The idea behind that feature was, that it should be obvious to the user, that he is only looking at a part of the data. A zoomed view can lead to misinterpretation if the user is not aware of it. At least that is what I thought when I added that feature.

Nov 19 2018, 4:27 PM · Noteworthy, Restricted Project, MITK

Oct 23 2018

kleina triaged T25555: Use Comma as delimiter when copying to clipboard as Low priority.
Oct 23 2018, 4:28 PM · MITK

Sep 14 2018

kleina added a comment to T23104: Deprecate QmitkPlotWidget.

I created a subtask. We'll look into this.

Sep 14 2018, 2:50 PM · Restricted Project, MITK
kleina triaged T25437: Evaluate to switch from C3.js to Plotly.js as Normal priority.
Sep 14 2018, 2:50 PM · Noteworthy, Restricted Project, MITK
kleina added a comment to T23104: Deprecate QmitkPlotWidget.

We just took a look at plotly.js. In contrast to C3, it supports error-bars and is still under development (see guithub stats).
To use plotly.js with MITK chart we think, that no fundamental changes on C++ side are necessary. Just the JS stuff needs to be rewritten.

Sep 14 2018, 1:40 PM · Restricted Project, MITK

Jul 6 2018

kleina added a member for Deep Learning: adler.
Jul 6 2018, 11:26 AM

Jun 26 2018

kleina moved T24972: Protocol Medical Decathlon Milestone 2 Meeting from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Jun 26 2018, 11:22 AM · Restricted Project

Jun 25 2018

kleina updated the task description for T24972: Protocol Medical Decathlon Milestone 2 Meeting.
Jun 25 2018, 3:35 PM · Restricted Project
kleina created T24972: Protocol Medical Decathlon Milestone 2 Meeting.
Jun 25 2018, 3:21 PM · Restricted Project

Apr 27 2018

kleina committed rMITKd2e319c74ab5: added QmitkStatisticsFilterProxyModel to be able to filter table and show/hide… (authored by kleina).
added QmitkStatisticsFilterProxyModel to be able to filter table and show/hide…
Apr 27 2018, 3:38 PM

Apr 13 2018

kleina committed rMITK73d5d26292e1: fix merge (authored by kleina).
fix merge
Apr 13 2018, 3:22 PM
kleina committed rMITK62b194e31457: Merge branch 'T24182-newImageStatisticsPlugin' of https://phabricator.mitk. (authored by kleina).
Merge branch 'T24182-newImageStatisticsPlugin' of https://phabricator.mitk.
Apr 13 2018, 3:03 PM
kleina committed rMITKf7b12336b525: Merge branch 'T24639-linux-build-errors' into T24182-newImageStatisticsPlugin (authored by kleina).
Merge branch 'T24639-linux-build-errors' into T24182-newImageStatisticsPlugin
Apr 13 2018, 3:03 PM
kleina committed rMITK27a272fb205f: Fixed some warning for gcc (authored by kleina).
Fixed some warning for gcc
Apr 13 2018, 11:55 AM
kleina triaged T24415: Qt Updates for the install video as Low priority.
Apr 13 2018, 9:17 AM · Restricted Project, MITK

Mar 22 2018

kleina accepted rMITKe026d9035698: Resolved T23466 added chart type parameter als data property.
Mar 22 2018, 2:11 PM
kleina added a comment to T24435: Segmentation on rotated slices does not work.

Try: E130-Daten\BlackSwan\Patients_for_Registration\0HLXYUL7_0HLXYUL7\16\resources\DICOM

Mar 22 2018, 11:14 AM · MITK (2018-04)

Mar 19 2018

kleina committed rMITK50c25fe4b875: The image statistics can deal with images with multiple time steps now (authored by kleina).
The image statistics can deal with images with multiple time steps now
Mar 19 2018, 10:14 AM

Feb 5 2018

kleina added a comment to T23912: histogram background color in imageStatistics plugin does not change in DarkTheme.

There might also be a Problem when changing the theme. You might have to deselect and reselect the data node. But generally speaking the histogram is available in dark, it works and looks neat.

Feb 5 2018, 9:37 AM · Restricted Project, MITK

Feb 2 2018

kleina triaged T24171: MitkChart should only have set functions as Low priority.
Feb 2 2018, 10:17 AM · Restricted Project, MITK
kleina added a comment to T24155: PluginGenerator: forbid spaces in view name.

see http://docs.mitk.org/nightly/NewPluginPage.html
Spaces are ok, but we should test it one more time.

Feb 2 2018, 9:37 AM · Restricted Project, MITK

Jan 29 2018

kleina added a member for Deep Learning: zhangs.
Jan 29 2018, 10:47 AM

Jan 18 2018

kleina closed T20207: Runtime Error when calculating ImageStatistics on non-closed PlanarFigures as Resolved.

Also works for me. I'll close this task.

Jan 18 2018, 10:21 AM · MITK

Jan 5 2018

kleina added a comment to T23468: Display data points without connecting line in MitkChart.

Instead of hiding the line one could just use a scatter plot... I will look into this next time

Jan 5 2018, 4:11 PM · Restricted Project, MITK
kleina updated subscribers of T23468: Display data points without connecting line in MitkChart.

@vemuri and I integrated the proposal by @laha and @hempe.
The solution needs to be tested with multiple data lines. We tested it within the Image statistics plugin and it worked.

Jan 5 2018, 3:58 PM · Restricted Project, MITK
kleina committed rMITK1f711fe05a4e: add possibility to hide line in MitkChart (authored by kleina).
add possibility to hide line in MitkChart
Jan 5 2018, 3:57 PM
kleina added a comment to T23468: Display data points without connecting line in MitkChart.

Pushed new branch T23468-add-line-style-hidden.

Jan 5 2018, 3:56 PM · Restricted Project, MITK
kleina claimed T23468: Display data points without connecting line in MitkChart.

Yes

Jan 5 2018, 1:28 PM · Restricted Project, MITK
kleina committed rMITK372146d2b334: removed some commented code (authored by kleina).
removed some commented code
Jan 5 2018, 9:30 AM

Dec 22 2017

kleina committed rMITKc0b32049a1aa: tried to fix background issue... made some progress (authored by kleina).
tried to fix background issue... made some progress
Dec 22 2017, 3:34 PM
kleina added a comment to T23912: histogram background color in imageStatistics plugin does not change in DarkTheme.

Pushed new branch T23912-histogram-background-color.

Dec 22 2017, 3:34 PM · Restricted Project, MITK
kleina claimed T23912: histogram background color in imageStatistics plugin does not change in DarkTheme.

We identified the problem.

  • default style in QtStyleManager does not change the preference
  • preference page does not know about the default style
  • preference page clears the QtStylemanager and thus resets to default each time
Dec 22 2017, 3:27 PM · Restricted Project, MITK