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Maniphest T30182

[SEG] Storing segmentation as DICOM Seg failes if reference image is not a valid DICOM
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Description

Test image is MITK-Data/3D+t-Heart
When tried to save the segmentation node in Data Manager as labels.dcm exception occurs.

31.48 core.mod.mltLbl.dicomSegIo: Writing image: C:/Users/a178n.AD/Documents/labels.dcm
W: StudyInstanceUID (0020,000d) violates VR definition in GeneralStudyModule
W: FrameOfReferenceUID (0020,0052) empty in FrameOfReferenceModule (type 1)
Condition failed: Value Representation violated in C:\MITK_ws3\MITK-superbuild\ep\src\DCMQI\libsrc\ImageSEGConverter.cpp:112

Reason: The test image is not fully DICOM compliant (see log output). Currently the input image is always parsed by dcmqi (dcmtk) when storing the segmentation.

Should be solved through T26951. As it would avoid the need of parsing the input file.

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Event Timeline

floca triaged this task as Normal priority.Aug 4 2023, 10:17 AM
floca created this task.
floca added a subtask: T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object.
kislinsk edited projects, added MITK (v2024.06); removed MITK (v2023.12).Dec 5 2023, 10:38 AM
floca renamed this task from [SEG] Storing segmentation as DICOM Seg sometimes failes to [SEG] Storing segmentation as DICOM Seg failes if reference image is not a valid DICOM.Feb 27 2024, 9:23 AM
kislinsk edited projects, added MITK (v2024.12); removed MITK (v2024.06).Jun 17 2024, 2:33 PM
kislinsk closed this task as Resolved.Mon, Sep 16, 1:49 PM
kislinsk claimed this task.
kislinsk added a project: Moved to git.dkfz.de.
kislinsk added a subscriber: kislinsk.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

kislinsk closed subtask T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object as Resolved.Mon, Sep 16, 1:49 PM
MITK · MIC · IMSY · DKFZ