isensee (Fabian Isensee)
User

Projects (6)

User Details

User Since
Aug 1 2016, 12:10 PM (94 w, 5 d)

Recent Activity

Dec 20 2017

isensee triaged T23981: Multilabel color map should disable interpolation as Normal priority.
Dec 20 2017, 9:07 AM · MITK

Oct 24 2017

isensee created T23590: Level Window Multilabel Segmentation.
Oct 24 2017, 9:24 AM · MITK
isensee created T23589: Multilabel Segmentations not loaded with multilabel colormap.
Oct 24 2017, 9:22 AM · MITK

Feb 3 2017

isensee closed T22403: Image Statistics are always calculated twice as Resolved.
Feb 3 2017, 11:39 AM · MITK
isensee committed rMITKfa748d96eb17: Merge branch 'T22403-ImageStatisticsAreAlwaysComputedTwice' (authored by isensee).
Merge branch 'T22403-ImageStatisticsAreAlwaysComputedTwice'
Feb 3 2017, 11:39 AM
isensee committed rMITKf6260e4efef8: fixed improper handling of this->Modified() in MaskGenerators and… (authored by isensee).
fixed improper handling of this->Modified() in MaskGenerators and…
Feb 3 2017, 11:36 AM

Jan 23 2017

isensee added a comment to T22403: Image Statistics are always calculated twice.

Bug is not in the plugin (oops).
The plugin calls the GetStatistics method twice, but should not trigger the calculation 2 but instead simply return the already computed statistics at the second call.
The bug is caused by improper handling of modified() functionality in the image statistics calculator and in the mask generators. Whenever the time step is changed, both will be modified which is noticed by the image statistics calculator and will lead to recomputation of statistics.

Jan 23 2017, 12:04 PM · MITK

Jan 20 2017

isensee added a comment to T22403: Image Statistics are always calculated twice.

Pushed new branch T22403-ImageStatisticsAreAlwaysComputedTwice.

Jan 20 2017, 2:08 PM · MITK
isensee created T22405: Caching of image statistics does not work (any more?).
Jan 20 2017, 2:02 PM · MITK
isensee created T22404: Editing multilabels constantly triggers image statistics calculation.
Jan 20 2017, 2:00 PM · MITK
isensee created T22403: Image Statistics are always calculated twice.
Jan 20 2017, 1:55 PM · MITK
isensee created T22402: Imagestatistics Higtogram tooltip is not updated properly when showing a line graph.
Jan 20 2017, 1:54 PM · MITK
kislinsk awarded T22397: Image Statistics Calculator Test has a memory leak a Hungry Hippo token.
Jan 20 2017, 11:56 AM · MITK
isensee closed T22397: Image Statistics Calculator Test has a memory leak as Resolved.

Missing teardown method was added. After each test all image and pf pointers are reset to nullptr.

Jan 20 2017, 11:53 AM · MITK
hentsch awarded rMITK8e3b22944da1: added a teardown function to the test. this solves the memory leak a Yellow Medal token.
Jan 20 2017, 11:50 AM
isensee committed rMITK8e3b22944da1: added a teardown function to the test. this solves the memory leak (authored by isensee).
added a teardown function to the test. this solves the memory leak
Jan 20 2017, 11:49 AM
isensee added a comment to T22397: Image Statistics Calculator Test has a memory leak.

Pushed new branch T22397-imageStatisticsCalculatorTestMemoryLeak.

Jan 20 2017, 11:48 AM · MITK
isensee created T22397: Image Statistics Calculator Test has a memory leak.
Jan 20 2017, 11:44 AM · MITK

Dec 7 2016

isensee committed rMITKa165fc2ebeeb: Merge branch 'T19609-integration-branch2-final' (authored by isensee).
Merge branch 'T19609-integration-branch2-final'
Dec 7 2016, 1:33 PM
isensee committed rMITKd3613dec9235: fixed hotspot statistics tests (authored by isensee).
fixed hotspot statistics tests
Dec 7 2016, 1:30 PM

Dec 6 2016

isensee committed rMITKcb6977bd4b72: reduced verbosity of image statistics caluculator. Also changed the path of the… (authored by isensee).
reduced verbosity of image statistics caluculator. Also changed the path of the…
Dec 6 2016, 12:06 PM
isensee added a comment to T19609: platform project: New ImageStatistics Module.

Pushed new branch T19609-integration-branch2-final.

Dec 6 2016, 12:06 PM · MITK (2016-11), Bugzilla
isensee committed rMDa125ed9c8da1: added new image statistics test data (authored by isensee).
added new image statistics test data
Dec 6 2016, 12:03 PM

Dec 2 2016

isensee added a comment to T19708: Upgrade to latest d3.js and reimplement histogram with QWebEngine.

You are right. I forgot to add some data to the MITK data tarball. Now that Jan is gone: who should I contact for adding the required data? What is missing are just some dummy segmentations and planar figures, all in all less than 1MB

Dec 2 2016, 3:37 PM · MITK (2016-11), Bugzilla

Nov 25 2016

isensee committed rMITK4e29bc7eb15e: fixed remaining merge conflicts (authored by isensee).
fixed remaining merge conflicts
Nov 25 2016, 11:00 AM
isensee committed rMITK1056a5b635f3: fixed merge conflicts except for displayInteractor (cpp and hpp) (authored by isensee).
fixed merge conflicts except for displayInteractor (cpp and hpp)
Nov 25 2016, 10:59 AM
isensee added a comment to T19609: platform project: New ImageStatistics Module.

Pushed new branch T19609-integration-branch2.

Nov 25 2016, 10:59 AM · MITK (2016-11), Bugzilla

Nov 11 2016

isensee committed rMITK7193993bed09: fixed nan check in image statistics calculator test; fixed issue with planar… (authored by isensee).
fixed nan check in image statistics calculator test; fixed issue with planar…
Nov 11 2016, 10:51 AM

Oct 28 2016

isensee committed rMITK580c42bef28c: added imagestatistics calculator tests (authored by isensee).
added imagestatistics calculator tests
Oct 28 2016, 4:13 PM
isensee committed rMITKcf15691a0a01: merged (authored by isensee).
merged
Oct 28 2016, 10:14 AM
isensee added a comment to T19609: platform project: New ImageStatistics Module.

Pushed new branch T19609-integration-branch.

Oct 28 2016, 10:14 AM · MITK (2016-11), Bugzilla

Sep 30 2016

isensee moved T19609: platform project: New ImageStatistics Module from Backlog to Bugsquashing - In Progress on the MITK board.
Sep 30 2016, 9:11 AM · MITK (2016-11), Bugzilla

Aug 10 2016

isensee added a comment to T17963: mitkImageStatisticsCalculator: refactoring of min and max index search.

This issue is adressed and solved in my branch (see Task T19609).

Aug 10 2016, 9:49 AM · Bugzilla, MITK

Aug 2 2016

isensee added projects to T19706: imageStatisticsCalculator SetHistogramBinSize has no effect on number of bins: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, MITK
isensee added a comment to T19706: imageStatisticsCalculator SetHistogramBinSize has no effect on number of bins.

new Image Statistics Calculator: T19609

Aug 2 2016, 10:23 AM · Bugzilla, MITK
isensee added projects to T19707: ImageStatisticsCalculator will not compute neither Histogram statistics nor custom statistics (skewness, kurtosis, MPP) of the hotspot if hotspot is enabled: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, MITK
isensee added a comment to T19705: image statistics calculator does not switch properly between masking modes.

new Image Statistics Calculator: T19609

Aug 2 2016, 10:23 AM · Bugzilla, MITK
isensee added projects to T19705: image statistics calculator does not switch properly between masking modes: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, MITK
isensee added projects to T19657: Point Set Contour not visible in 3D Window: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, MITK
isensee added projects to T19646: View Navigator: added view is not restored after 'close perspective' followed by reopening workflow: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · MITK, Bugzilla
isensee added projects to T19631: Axis confusion in ImageNavigator: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, MITK
isensee added a comment to T19625: Statistics: invalid coordinates of min/max values.

The 4th coordinate should not be displayed in the first place because the ImageStatisticsCalculator computes the min and max value for each 3D/2D TimeStep separately.

Aug 2 2016, 10:23 AM · MITK (2016-03), Bugzilla
isensee added a comment to T19625: Statistics: invalid coordinates of min/max values.

imageStatisticsCalculator had:

statistics.SetMinIndex(maxIndex);
statistics.SetMinIndex(minIndex);
Aug 2 2016, 10:23 AM · MITK (2016-03), Bugzilla
isensee added a comment to T19625: Statistics: invalid coordinates of min/max values.

[f7f8f6]: merged fix to T19625 Merge branch 'bug-19625-Wrong-Coordinates-Of-M

Merged commits:

2016-03-23 14:28:30 Fabian Isensee [186ab3]
fixed T19625, there was some confusion about image dimensions, coordinates (vnl vector sizes) and two times setMinCoordinate (instead of setMin and setMax)

Aug 2 2016, 10:23 AM · MITK (2016-03), Bugzilla
isensee added projects to T19619: Watershed seems to allow too few regions or is not working properly: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, MITK
isensee added projects to T19618: watershed: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, MITK
isensee added projects to T19609: platform project: New ImageStatistics Module: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · MITK (2016-11), Bugzilla
isensee added projects to T19574: Fill/Erase does not fill whole slice: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, MITK
isensee added a comment to F1296: Untitled.png.

erase_fill_tool_bug

Aug 2 2016, 10:23 AM
isensee added projects to T19536: live wire tool deactivation does not result in expected behavior: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, MITK
isensee added a comment to T19529: Fill and erase entire slice ignores zero index.

The zero index is not filled in any of the three dimensions of an image

Aug 2 2016, 10:22 AM · Bugzilla, MITK
isensee added a comment to T19527: 2D region grower is not working.

Only the green initial contour is missing. The segmentation can indeed be influenced by holding the mouse button and moving the mouse up and down, but this is hard to notice since the green contour is not visible.

Aug 2 2016, 10:22 AM · Bugzilla, MITK
isensee added a comment to T19528: Picking tool result not usable.

Picking segmentations using shift+click is not possible -> nothing happens.

Aug 2 2016, 10:22 AM · MITK (2016-03), Bugzilla
isensee added a comment to T19529: Fill and erase entire slice ignores zero index.

Is fixed now, thank you!

Aug 2 2016, 10:22 AM · Bugzilla, MITK
isensee added a comment to T19525: Closing Project / Reinitialize segmentation sometimes leads to crashes.

The fix for this bug is divided into 2 parts:

Aug 2 2016, 10:22 AM · MITK (2016-03), Bugzilla
isensee added a comment to T19461: ImageStatistic Plugin is missing Median Calculation.

Image statistics now has the ability to calculate the median,
test have also been added to the image statistics test driver

Aug 2 2016, 10:22 AM · Bugzilla, MITK
isensee added a comment to T19126: Fill/Erase tool leads to crashes in MAC OS X on several occasions.

The bug also occurs on Linux (Ubuntu 14.04 LTS). I used a fresh build from master (8d00674c854892bafa142c14471e8a1f93ba44f0)

Aug 2 2016, 10:20 AM · MITK (2016-03), Bugzilla
isensee added a comment to T19126: Fill/Erase tool leads to crashes in MAC OS X on several occasions.

Seems to be fixed for Linux (cannot test OS X).

Aug 2 2016, 10:20 AM · MITK (2016-03), Bugzilla
isensee added a comment to T18671: mitkNavigationToolStorageSerializerTest fails since changes on NavigationToolWriter.

Works for me (Windows and Linux)

Aug 2 2016, 10:18 AM · Bugzilla, MITK
isensee added a comment to T18256: USImageSource crashes at Update() when using a video device in Debug mode.

Cannot reproduce in MITK (not MBI) in Ubuntu 14.04

Aug 2 2016, 10:15 AM · MITK, Bugzilla
isensee added a comment to T18165: Segmentation tools can not be enabled after segmentation node binary property re-change..

Just stumbled onto this bug again. What did you mean by 'obsolete in the future'?

Aug 2 2016, 10:15 AM · Bugzilla, MITK