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isensee (Fabian Isensee)
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Projects (8)

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User Since
Aug 1 2016, 12:10 PM (128 w, 6 d)

Recent Activity

Nov 28 2018

isensee added a comment to T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..

As far as I can tell files were split along t with fslsplit.

Nov 28 2018, 9:01 AM · MITK

Nov 27 2018

isensee added a comment to T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..

These images are from the Kora Dataset. Peter Full and @kislinsk have the original DICOM images.
The images were 4d DICOM originally and have been converted into 3d nifti by @kislinsk

Nov 27 2018, 9:38 AM · MITK

Nov 26 2018

isensee added a comment to T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..

I accidentally uploaded the segmentation. This is the raw data. The problem occurs with both.

Nov 26 2018, 11:22 AM · MITK
isensee created T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..
Nov 26 2018, 11:21 AM · MITK

Oct 26 2018

isensee closed T23589: Multilabel Segmentations not loaded with multilabel colormap as Wontfix.

I think this is either a duplicate or this is is not correct. Please ignore

Oct 26 2018, 3:14 PM · MITK

Jul 2 2018

isensee added a comment to T25020: Fabians Experiments.

Dice reweighting:
Oversampling foreground makes the dice believe the foreground is more frequent than it actually is. Therefore, it does not punish false positives hard enough. I therefore tried to balance the dice by doing the following:

Jul 2 2018, 3:23 PM · Restricted Project
isensee added a comment to T25020: Fabians Experiments.

Multiview:
Similar to Jakobs segmentation method. 3 UNets, each trained with a different perspective. Little improvement on Hippocampus, no difference on BraTS, but worse performance on other datasets -> Max be due to anisotropy

Jul 2 2018, 3:20 PM · Restricted Project
isensee created T25020: Fabians Experiments.
Jul 2 2018, 3:18 PM · Restricted Project