Totalsegmentator dependency fix

Summary:
After numpy v2 update Totalsegmentator stopped working. This diff is to ensure numpy is <2.
The root cause is due version not being specified for numpy by Totalsegmentar in its setup.py dependency specification.
I also found other dependencies not having version specified. These packages are now explicitly defined with upper limit on their versions in MITK.
Ref: https://github.com/wasserth/TotalSegmentator/blob/master/setup.py

Test Plan: NA

Reviewers: kislinsk, floca, O1 MITK Reviewer Group I

Reviewed By: kislinsk, O1 MITK Reviewer Group I

Maniphest Tasks: T30479

Differential Revision: https://phabricator.mitk.org/D973