Merge branch 'bug-19600-Active-Learning-Module' into bug-19600-master…
b6bb41cb2ce0
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Merge branch 'bug-19600-Active-Learning-Module' into bug-19600-master-integration

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• petersej	Authored on Aug 11 2016, 5:09 PM
• petersej	Pushed on Aug 11 2016, 6:01 PM

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rMITKb9e2b7765c43: Painting works, rendering doesn't
rMITKee563d7864e4: Merge branch 'T19857-ChangeDashboardURLs'

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• petersej committed rMITKb6bb41cb2ce0: Merge branch 'bug-19600-Active-Learning-Module' into bug-19600-master… (authored by • petersej).Aug 11 2016, 5:09 PM

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b9e2b7765c43 Painting works, rendering doesn't
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3b868dc009d5 Minor changes
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62d032732a88 Deactivate Diffusion and Vigra Testing
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d4aa51eed883 Normalize entropy
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0e5bf664d99b Fix Qt Creator crash
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733789a0d807 Create vector image
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381375abcb93 Suggestion filter works
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349039a1e033 Move filters to header
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b41e9494b9be Initialize test
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fe75b3b85674 Initialize MiniApp
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2e0d66dccbb6 Start prediction filter
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fb5eead70f2f Composite filter, fix typedefs
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2fc94ad3ed67 Implement filter to select region
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afb7fb2fe53c Implement 3 uncertainty filters
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e5784a01d833 Finish abstract uncertainty filter
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92597f90f834 Fix missing typenames, start filter impl
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5924a296d2d1 Merge branch 'bug-19600-Active-Learning-Module' into bug-19600-master…
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cf2776c6c667 Start implementation of uncertainty filter
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87d0eacb7174 Start work on interactor
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838cccaca75f Removal now working
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f7d7d9235a74 Remove should reset labels
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d437af797075 Removal works now, added rev iterator for labelset
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ade1ca9838a3 Remove not quite working
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501b76963a0d Finish UI
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46eee3b6a96c Switch to QStandardItemModel
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6965d288bb1a Abandon multilabel from here
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5de22cf6a111 Start implementation of init method
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0126c42e9d2b Implement check on selection change
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690015eef61d Create active learning plugin
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aa3092494058 Make Multilabel plugin work
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a26bef415659 Merge branch 'bug-18647-multilabelsegmentationplugin-integration-2015-11-25'…
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3051909ca95c Merge branch 'bug-19458-ChrashWithNewLabel' into bug-18647…
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cbd379f9db95 Removed assert. Now presenting a information dialog.
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16040c9fa998 Fix of missing export macro
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a1e07c26fba8 Refactored mitk::LabelSetImageIO
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f762c0cb77ff Temporarily commented out to resolve build errors
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f9b21294ea7e Removed unnecessary export macro
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1a200dda4cdd Qt4 and Qt5 compatibility
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a0d0746c3c66 Used correct function call
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a691f2b0bfb5 Fixed tool return value
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6bd0a3261db7 Removed unused parameter
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ce50eae7ead7 Merge remote-tracking branch 'origin/bug-18647-multilabelsegmentationplugin…
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69e426680d54 Merge branch 'bug-18647-multilabelsegmentationplugin' into bug-18647…
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159410f45e44 Merge branch 'bug-19269-StampShapeForMultiLabelSegmentation' into bug-18647…
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90c3e1aedabf Updated mitk-data hash tag
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8f05f656bc0e edesigned failing tests
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1e1b021d6316 Code refactoring. Test still fails due to a strange bug.
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aa17534b633b Working version. Added a new test for the new filter
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11cfbb97d97d Added a filter for Stamping into MultiLabelImages
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128fa991cac7 Changes for Qt5
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Changes (270)
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Very Large Commit

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Path

Size

Packages

Modules/

Classification/

mitkAbstractClassifierPredictionFilter.h

mitkActiveLearningInteractor.h

mitkActiveLearningSuggestRegionFilter.h

mitkPredictionConfidenceFilter.h

mitkPredictionEntropyFilter.h

mitkPredictionMarginFilter.h

mitkPredictionUncertaintyFilter.h

mitkSelectHighestUncertaintyRegionFilter.h

mitkAbstractClassifierPredictionFilter.cpp

mitkActiveLearningInteractor.cpp

mitkActiveLearningSuggestRegionFilter.cpp

mitkPredictionConfidenceFilter.cpp

mitkPredictionEntropyFilter.cpp

mitkPredictionMarginFilter.cpp

mitkPredictionUncertaintyFilter.cpp

mitkSelectHighestUncertaintyRegionFilter.cpp

test

CMakeLists.txt

files.cmake

mitkActiveLearningTest.cpp

CLMiniApps/

CLActiveLearningApp.cpp

CMakeLists.txt

CLVigraRandomForest/

CMakeLists.txt

ContourModel/

Algorithms/

mitkContourModelUtils.cpp

O3: MITK Reviewer Group II

mitkContourModelUtils.h

O3: MITK Reviewer Group II

CMakeLists.txt

O3: MITK Reviewer Group II

DiffusionImaging/

CMakeLists.txt

Multilabel/

Testing/

files.cmake

O1: MITK Reviewer Group I

mitkLabelSetImageSurfaceStampFilterTest.cpp

O1: MITK Reviewer Group I

mitkLabelSetImageTest.cpp

O1: MITK Reviewer Group I

autoload/

IO/

mitkLabelSetImageIO.cpp

O1: MITK Reviewer Group I

mitkLabelSetImageIO.h

O1: MITK Reviewer Group I

files.cmake

O1: MITK Reviewer Group I

mitkLabelSet.cpp

O1: MITK Reviewer Group I

mitkLabelSet.h

O1: MITK Reviewer Group I

mitkLabelSetIOHelper.cpp

O1: MITK Reviewer Group I

mitkLabelSetIOHelper.h

O1: MITK Reviewer Group I

mitkLabelSetImageSurfaceStampFilter.cpp

O1: MITK Reviewer Group I

mitkLabelSetImageSurfaceStampFilter.h

O1: MITK Reviewer Group I

Segmentation/

Algorithms/

mitkContourModelSetToImageFilter.cpp

O1: MITK Reviewer Group I

mitkContourUtils.cpp

O1: MITK Reviewer Group I

mitkCorrectorAlgorithm.cpp

O1: MITK Reviewer Group I

mitkCorrectorAlgorithm.h

O1: MITK Reviewer Group I

mitkSurfaceStampImageFilter.cpp

O1: MITK Reviewer Group I

mitkSurfaceStampImageFilter.h

O1: MITK Reviewer Group I

Controllers/

mitkSliceBasedInterpolationController.cpp

O1: MITK Reviewer Group I

mitkSliceBasedInterpolationController.h

O1: MITK Reviewer Group I

Interactions/

mitkContourTool.cpp

O1: MITK Reviewer Group I

mitkContourTool.h

O1: MITK Reviewer Group I

mitkCorrectorTool2D.cpp

O1: MITK Reviewer Group I

mitkFeedbackContourTool.cpp

O1: MITK Reviewer Group I

mitkLiveWireTool2D.cpp

O1: MITK Reviewer Group I

mitkPaintbrushTool.cpp

O1: MITK Reviewer Group I

mitkRegionGrowingTool.cpp

O1: MITK Reviewer Group I

mitkRegionGrowingTool.h

O1: MITK Reviewer Group I

mitkSegTool2D.cpp

O1: MITK Reviewer Group I

mitkSegTool2D.h

O1: MITK Reviewer Group I

mitkSegmentationInteractor.cpp

O1: MITK Reviewer Group I

mitkSegmentationInteractor.h

O1: MITK Reviewer Group I

mitkSetRegionTool.cpp

O1: MITK Reviewer Group I

files.cmake

O1: MITK Reviewer Group I

SegmentationUI/

Qmitk/

QmitkLabelSetWidget.cpp

O1: MITK Reviewer Group I

QmitkLabelSetWidget.h

O1: MITK Reviewer Group I

QmitkLabelSetWidgetControls.ui

O1: MITK Reviewer Group I

QmitkMaskStampWidget.cpp

O1: MITK Reviewer Group I

QmitkMaskStampWidget.h

O1: MITK Reviewer Group I

QmitkMaskStampWidgetGUIControls.ui

O1: MITK Reviewer Group I

QmitkSearchLabelDialog.cpp

O1: MITK Reviewer Group I

QmitkSearchLabelDialog.h

O1: MITK Reviewer Group I

QmitkSearchLabelDialogGUI.ui

O1: MITK Reviewer Group I

QmitkSliceBasedInterpolatorWidget.cpp

O1: MITK Reviewer Group I

QmitkSliceBasedInterpolatorWidget.h

O1: MITK Reviewer Group I

QmitkSliceBasedInterpolatorWidgetGUIControls.ui

O1: MITK Reviewer Group I

QmitkSurfaceBasedInterpolatorWidget.cpp

O1: MITK Reviewer Group I

QmitkSurfaceBasedInterpolatorWidget.h

O1: MITK Reviewer Group I

QmitkSurfaceBasedInterpolatorWidgetGUIControls.ui

O1: MITK Reviewer Group I

QmitkSurfaceStampWidget.cpp

O1: MITK Reviewer Group I

QmitkSurfaceStampWidget.h

O1: MITK Reviewer Group I

QmitkSurfaceStampWidgetGUIControls.ui

O1: MITK Reviewer Group I

files.cmake

O1: MITK Reviewer Group I

resources

O1: MITK Reviewer Group I

AcceptAllInterpolations.png

O1: MITK Reviewer Group I

AcceptCurrentInterpolation.png

O1: MITK Reviewer Group I

AcceptSurfaceInterpolation.png

O1: MITK Reviewer Group I

Accept_48x48.png

O1: MITK Reviewer Group I

AddLayer_48x48.png

O1: MITK Reviewer Group I

AdvancedTools.png

O1: MITK Reviewer Group I

BooleanDifference_48x48.png

O1: MITK Reviewer Group I

BooleanIntersection_48x48.png

O1: MITK Reviewer Group I

BooleanUnion_48x48.png

O1: MITK Reviewer Group I

Cancel_48x48.png

O1: MITK Reviewer Group I

ClearSeeds_48x48.png

O1: MITK Reviewer Group I

CreateMask.png

O1: MITK Reviewer Group I

CreateSurface.png

O1: MITK Reviewer Group I

DeleteLayer_48x48.png

O1: MITK Reviewer Group I

EraseLabel.png

O1: MITK Reviewer Group I

Help_48x48.png

O1: MITK Reviewer Group I

ImportLabelSet_48x48.png

O1: MITK Reviewer Group I

ImportLabeledImage_48x48.png

O1: MITK Reviewer Group I

LockExterior_48x48.png

O1: MITK Reviewer Group I

MergeLabels.png

O1: MITK Reviewer Group I

NewLabel_48x48.png

O1: MITK Reviewer Group I

NextLayer_48x48.png

O1: MITK Reviewer Group I

PreviousLayer_48x48.png

O1: MITK Reviewer Group I

RandomColor.png

O1: MITK Reviewer Group I

RemoveLabel.png

O1: MITK Reviewer Group I

RenameLabel.png

O1: MITK Reviewer Group I

Run_48x48.png

O1: MITK Reviewer Group I

SegmentationInteractor_48x48.png

O1: MITK Reviewer Group I

SegmentationUI.qrc

O1: MITK Reviewer Group I

Start.png

O1: MITK Reviewer Group I

Stop.png

O1: MITK Reviewer Group I

UnlockExterior_48x48.png

O1: MITK Reviewer Group I

invisible.png

O1: MITK Reviewer Group I

lock.png

O1: MITK Reviewer Group I

unlock.png

O1: MITK Reviewer Group I

visible.png

O1: MITK Reviewer Group I

SurfaceInterpolation/

CMakeLists.txt

files.cmake

mitkSurfaceBasedInterpolationController.cpp

mitkSurfaceBasedInterpolationController.h

Plugins/

PluginList.cmake

org.mitk.gui.qt.activelearning

CMakeLists.txt

files.cmake

manifest_headers.cmake

QmitkActiveLearning.cpp

QmitkActiveLearning.h

QmitkActiveLearningControls.ui

org_mitk_gui_qt_activelearning_Activator.cpp

org_mitk_gui_qt_activelearning_Activator.h

org.mitk.gui.qt.multilabelsegmentation

CMakeLists.txt

documentation

UserManual

QmitkSegmentationTechnical.dox

ToolExtensionsGeneralOverview.dox

interactive_segmentation_classes.png

interactive_segmentation_classes.xcf

multilabelsegmentation.png

org_mitk_gui_qt_multilabelsegmentation.dox

org_mitk_gui_qt_segmentation2DInterpolation.png

org_mitk_gui_qt_segmentation3DInterpolationWrongRight.png

org_mitk_gui_qt_segmentationIMGLabelTableMultipleSelectionContextMenu.png

org_mitk_gui_qt_segmentationIMGLabelTableSingleSelectionContextMenu.png

org_mitk_gui_qt_segmentationIMGLiveWireUsage.PNG

org_mitk_gui_qt_segmentationIMGapplication.png

org_mitk_gui_qt_segmentationIMGcorrectionActions.png

org_mitk_gui_qt_segmentationIMGdatamanagerview.png

org_mitk_gui_qt_segmentationIMGiconAddSubtract.png

org_mitk_gui_qt_segmentationIMGiconCorrection.png

org_mitk_gui_qt_segmentationIMGiconFastMarching2D.png

org_mitk_gui_qt_segmentationIMGiconFill.png

org_mitk_gui_qt_segmentationIMGiconFillErase.png

org_mitk_gui_qt_segmentationIMGiconLiveWire.png

org_mitk_gui_qt_segmentationIMGiconPaintWipe.png

org_mitk_gui_qt_segmentationIMGiconRegionGrowing.png

org_mitk_gui_qt_segmentationIMGlabeltable.png

org_mitk_gui_qt_segmentationIMGlayerManager.png

org_mitk_gui_qt_segmentationIMGleakage.png

org_mitk_gui_qt_segmentationIMGsearchlabel.png

org_mitk_gui_qt_segmentationIMGselection.png

org_mitk_gui_qt_segmentationIMGsurfacemask.png

org_mitk_gui_qt_segmentationIMGtoolbar.png

segmentationFromSurfaceBefore.png

doxygen

MultiLabelSegmentationProperties.dox

files.cmake

manifest_headers.cmake

plugin.xml

resources

BooleanDifference_48x48.png

BooleanIntersection_48x48.png

BooleanOperationsWidget.qrc

BooleanOperations_48x48.png

BooleanUnion_48x48.png

ImageMasking_48x48.png

Interactions

ConfigSegmentation.xml

SegmentationInteraction.xml

MorphologicalOperationsWidget.qrc

MorphologicalOperations_48x48.png

MultiLabelSegmentationUtilities.qrc

MultiLabelSegmentationUtilities_48x48.png

NewLabel_48x48.png

NewSegmentationSession_48x48.png

Opening_48x48.png

SurfaceToImage_48x48.png

deformablePlane.png

multilabelsegmentation.png

multilabelsegmentation.qrc

src

QmitkMultiLabelSegmentationPreferencePage.cpp

QmitkMultiLabelSegmentationPreferencePage.h

internal

Common

QmitkDataSelectionWidget.cpp

QmitkDataSelectionWidget.h

QmitkDataSelectionWidgetControls.ui

QmitkAutocropAction.cpp

QmitkAutocropAction.h

QmitkConvertMaskToLabelAction.cpp

QmitkConvertMaskToLabelAction.h

QmitkConvertSurfaceToLabelAction.cpp

QmitkConvertSurfaceToLabelAction.h

QmitkConvertToMultiLabelSegmentationAction.cpp

QmitkConvertToMultiLabelSegmentationAction.h

QmitkCreateMultiLabelPresetAction.cpp

QmitkCreateMultiLabelPresetAction.h

QmitkCreateMultiLabelSegmentationAction.cpp

QmitkCreateMultiLabelSegmentationAction.h

QmitkCreatePolygonModelAction.cpp

QmitkCreatePolygonModelAction.h

QmitkLoadMultiLabelPresetAction.cpp

QmitkLoadMultiLabelPresetAction.h

QmitkMultiLabelSegmentationControls.ui

QmitkMultiLabelSegmentationOrganNamesHandling.cpp

QmitkMultiLabelSegmentationView.cpp

QmitkMultiLabelSegmentationView.h

QmitkThresholdAction.cpp

QmitkThresholdAction.h

SegmentationUtilities

BooleanOperations

QmitkBooleanOperationsWidget.cpp

QmitkBooleanOperationsWidget.h

QmitkBooleanOperationsWidgetControls.ui

ImageMasking

QmitkImageMaskingWidget.cpp

QmitkImageMaskingWidget.h

QmitkImageMaskingWidgetControls.ui

MorphologicalOperations

QmitkMorphologicalOperationsWidget.cpp

QmitkMorphologicalOperationsWidget.h

QmitkMorphologicalOperationsWidgetControls.ui

QmitkMultiLabelSegmentationUtilitiesView.cpp

QmitkMultiLabelSegmentationUtilitiesView.h

QmitkMultiLabelSegmentationUtilitiesViewControls.ui

QmitkSegmentationUtilityWidget.cpp

QmitkSegmentationUtilityWidget.h

SurfaceToImage

QmitkSurfaceToImageWidget.cpp

QmitkSurfaceToImageWidget.h

QmitkSurfaceToImageWidgetControls.ui

mitkPluginActivator.cpp

mitkPluginActivator.h

target_libraries.cmake

org.mitk.gui.qt.properties/

src/

internal/

QmitkPropertyTreeView.cpp

O1: MITK Reviewer Group I

rMITKb6bb41cb2ce0

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Merge branch 'bug-19600-Active-Learning-Module' into bug-19600-master…b6bb41cb2ce0Actions

Description

Details

Event Timeline

Merged Changes

Changes (270)Show All Changes

Very Large Commit

rMITKb6bb41cb2ce0

Modules/Classification/CLActiveLearning/CMakeLists.txt

Modules/Classification/CLActiveLearning/files.cmake

Modules/Classification/CLActiveLearning/include/mitkAbstractClassifierPredictionFilter.h

Modules/Classification/CLActiveLearning/include/mitkActiveLearningInteractor.h

Modules/Classification/CLActiveLearning/include/mitkActiveLearningSuggestRegionFilter.h

Modules/Classification/CLActiveLearning/include/mitkPredictionConfidenceFilter.h

Modules/Classification/CLActiveLearning/include/mitkPredictionEntropyFilter.h

Modules/Classification/CLActiveLearning/include/mitkPredictionMarginFilter.h

Modules/Classification/CLActiveLearning/include/mitkPredictionUncertaintyFilter.h

Modules/Classification/CLActiveLearning/include/mitkSelectHighestUncertaintyRegionFilter.h

Modules/Classification/CLActiveLearning/resource/Interactions/Paint.xml

Modules/Classification/CLActiveLearning/resource/Interactions/PaintConfig.xml

Modules/Classification/CLActiveLearning/src/mitkAbstractClassifierPredictionFilter.cpp

Modules/Classification/CLActiveLearning/src/mitkActiveLearningInteractor.cpp

Modules/Classification/CLActiveLearning/src/mitkActiveLearningSuggestRegionFilter.cpp

Modules/Classification/CLActiveLearning/src/mitkPredictionConfidenceFilter.cpp

Modules/Classification/CLActiveLearning/src/mitkPredictionEntropyFilter.cpp

Modules/Classification/CLActiveLearning/src/mitkPredictionMarginFilter.cpp

Modules/Classification/CLActiveLearning/src/mitkPredictionUncertaintyFilter.cpp

Modules/Classification/CLActiveLearning/src/mitkSelectHighestUncertaintyRegionFilter.cpp

Modules/Classification/CLActiveLearning/test/CMakeLists.txt

Modules/Classification/CLActiveLearning/test/files.cmake

Modules/Classification/CLActiveLearning/test/mitkActiveLearningTest.cpp

Modules/Classification/CLMiniApps/CLActiveLearningApp.cpp

Modules/Classification/CLMiniApps/CMakeLists.txt

Modules/Classification/CLVigraRandomForest/CMakeLists.txt

Modules/Classification/CMakeLists.txt

Modules/ContourModel/Algorithms/mitkContourModelUtils.cpp

Modules/ContourModel/Algorithms/mitkContourModelUtils.h

Modules/ContourModel/CMakeLists.txt

Modules/DiffusionImaging/CMakeLists.txt

Modules/Multilabel/Testing/files.cmake

Modules/Multilabel/Testing/mitkLabelSetImageSurfaceStampFilterTest.cpp

Modules/Multilabel/Testing/mitkLabelSetImageTest.cpp

Modules/Multilabel/autoload/IO/mitkLabelSetImageIO.cpp

Modules/Multilabel/autoload/IO/mitkLabelSetImageIO.h

Modules/Multilabel/files.cmake

Modules/Multilabel/mitkLabelSet.cpp

Modules/Multilabel/mitkLabelSet.h

Modules/Multilabel/mitkLabelSetIOHelper.cpp

Modules/Multilabel/mitkLabelSetIOHelper.h

Modules/Multilabel/mitkLabelSetImageSurfaceStampFilter.cpp

Modules/Multilabel/mitkLabelSetImageSurfaceStampFilter.h

Modules/Segmentation/Algorithms/mitkContourModelSetToImageFilter.cpp

Modules/Segmentation/Algorithms/mitkContourUtils.cpp

Modules/Segmentation/Algorithms/mitkCorrectorAlgorithm.cpp

Modules/Segmentation/Algorithms/mitkCorrectorAlgorithm.h

Modules/Segmentation/Algorithms/mitkSurfaceStampImageFilter.cpp

Modules/Segmentation/Algorithms/mitkSurfaceStampImageFilter.h

Modules/Segmentation/Controllers/mitkSliceBasedInterpolationController.cpp

Modules/Segmentation/Controllers/mitkSliceBasedInterpolationController.h

Modules/Segmentation/Interactions/mitkContourTool.cpp

Modules/Segmentation/Interactions/mitkContourTool.h

Modules/Segmentation/Interactions/mitkCorrectorTool2D.cpp

Modules/Segmentation/Interactions/mitkFeedbackContourTool.cpp

Modules/Segmentation/Interactions/mitkLiveWireTool2D.cpp

Modules/Segmentation/Interactions/mitkPaintbrushTool.cpp

Modules/Segmentation/Interactions/mitkRegionGrowingTool.cpp

Modules/Segmentation/Interactions/mitkRegionGrowingTool.h

Modules/Segmentation/Interactions/mitkSegTool2D.cpp

Modules/Segmentation/Interactions/mitkSegTool2D.h

Modules/Segmentation/Interactions/mitkSegmentationInteractor.cpp

Modules/Segmentation/Interactions/mitkSegmentationInteractor.h

Modules/Segmentation/Interactions/mitkSetRegionTool.cpp

Modules/Segmentation/files.cmake

Modules/SegmentationUI/Qmitk/QmitkLabelSetWidget.cpp

Modules/SegmentationUI/Qmitk/QmitkLabelSetWidget.h

Modules/SegmentationUI/Qmitk/QmitkLabelSetWidgetControls.ui

Modules/SegmentationUI/Qmitk/QmitkMaskStampWidget.cpp

Modules/SegmentationUI/Qmitk/QmitkMaskStampWidget.h

Modules/SegmentationUI/Qmitk/QmitkMaskStampWidgetGUIControls.ui

Modules/SegmentationUI/Qmitk/QmitkSearchLabelDialog.cpp

Merge branch 'bug-19600-Active-Learning-Module' into bug-19600-master…
b6bb41cb2ce0
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