Diffusion MITK 5924a296d2d1

Merge branch 'bug-19600-Active-Learning-Module' into bug-19600-master…
5924a296d2d1
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Description

Merge branch 'bug-19600-Active-Learning-Module' into bug-19600-master-integration

Details

Provenance

• petersej

Authored on May 29 2016, 4:18 PM

Parents

rMITKcf2776c6c667: Start implementation of uncertainty filter
rMITK3f608decdef1: Merge branch 'bug-19038-gcc-fixes'

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Event Timeline

• petersej committed rMITK5924a296d2d1: Merge branch 'bug-19600-Active-Learning-Module' into bug-19600-master… (authored by • petersej).May 29 2016, 4:18 PM

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

cf2776c6c667 Start implementation of uncertainty filter
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• petersej
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87d0eacb7174 Start work on interactor
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• petersej
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838cccaca75f Removal now working
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• petersej
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f7d7d9235a74 Remove should reset labels
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• petersej
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d437af797075 Removal works now, added rev iterator for labelset
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• petersej
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ade1ca9838a3 Remove not quite working
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• petersej
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501b76963a0d Finish UI
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• petersej
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46eee3b6a96c Switch to QStandardItemModel
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• petersej
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6965d288bb1a Abandon multilabel from here
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• petersej
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5de22cf6a111 Start implementation of init method
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• petersej
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0126c42e9d2b Implement check on selection change
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• petersej
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690015eef61d Create active learning plugin
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• petersej
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aa3092494058 Make Multilabel plugin work
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• petersej
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a26bef415659 Merge branch 'bug-18647-multilabelsegmentationplugin-integration-2015-11-25'…
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• petersej
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3051909ca95c Merge branch 'bug-19458-ChrashWithNewLabel' into bug-18647…
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goetzm
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cbd379f9db95 Removed assert. Now presenting a information dialog.
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goetzm
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16040c9fa998 Fix of missing export macro
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goetzm
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a1e07c26fba8 Refactored mitk::LabelSetImageIO
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• fetzer
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f762c0cb77ff Temporarily commented out to resolve build errors
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• fetzer
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f9b21294ea7e Removed unnecessary export macro
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• fetzer
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1a200dda4cdd Qt4 and Qt5 compatibility
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• fetzer
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a0d0746c3c66 Used correct function call
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• fetzer
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a691f2b0bfb5 Fixed tool return value
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• fetzer
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6bd0a3261db7 Removed unused parameter
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• fetzer
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ce50eae7ead7 Merge remote-tracking branch 'origin/bug-18647-multilabelsegmentationplugin…
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• fetzer
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69e426680d54 Merge branch 'bug-18647-multilabelsegmentationplugin' into bug-18647…
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• fetzer
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159410f45e44 Merge branch 'bug-19269-StampShapeForMultiLabelSegmentation' into bug-18647…
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goetzm
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90c3e1aedabf Updated mitk-data hash tag
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goetzm
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8f05f656bc0e edesigned failing tests
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goetzm
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1e1b021d6316 Code refactoring. Test still fails due to a strange bug.
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goetzm
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aa17534b633b Working version. Added a new test for the new filter
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goetzm
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11cfbb97d97d Added a filter for Stamping into MultiLabelImages
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goetzm
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128fa991cac7 Changes for Qt5
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• goch
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68b5d45b85fc Fixed more warnings
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• fetzer
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068600a111d4 Fixed bug where tools remain deactivated
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• fetzer
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e75e358ec96e Fixed some warnings
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• fetzer
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a8d5e371aa26 Fixed crashes related to the former segmentation data
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• fetzer
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c2bde5714db1 Fixed cmake waring due to deprecated macro
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• fetzer
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d39cde384359 Fixed creation of labelset presets
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• fetzer
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b025feae02ab Merge branch 'bug-18646-integrate_Sebastian_Ordas_multilabel_plugin' into bug…
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• fetzer
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9f82c0d26314 Working Correction Tool
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goetzm
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fa4c9e1d9cb7 Multilabel for Region Tool and Removed debug output
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goetzm
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fddca84db2c1 Made 2d Region Growing compatible with multilabel
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goetzm
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5cdbb63bb104 Fixed the paintbrush-tool
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goetzm
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bb97bf09b244 Merge branch 'bug-18646-Michael1-EnsureAddToolFunction' into bug-18646…
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goetzm
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9426a4b1b264 ensure add-tool functionality
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goetzm
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3ead7bd19697 Added label value for current algorithm. Only necessary for LabelSetImages.
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goetzm
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b5a1f948f98e Added icons and other resources that where missing
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goetzm
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58ce63bdc730 Merge branch 'personal/cordes/multilabel-pluginfix' into bug-18646…
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2229761369d7 add resources
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• cordes
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Changes (251)
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Very Large Commit

This commit is very large. Load each file individually.

Path

Size

Packages

Modules/

Classification/

mitkActiveLearningInteractor.h

mitkActiveLearningSuggestRegion.h

mitkPredictionUncertaintyFilter.h

mitkActiveLearningInteractor.cpp

mitkActiveLearningSuggestRegion.cpp

mitkPredictionUncertaintyFilter.cpp

CMakeLists.txt

ContourModel/

Algorithms/

mitkContourModelUtils.cpp

O3: MITK Reviewer Group II

mitkContourModelUtils.h

O3: MITK Reviewer Group II

CMakeLists.txt

O3: MITK Reviewer Group II

Multilabel/

Testing/

files.cmake

O1: MITK Reviewer Group I

mitkLabelSetImageSurfaceStampFilterTest.cpp

O1: MITK Reviewer Group I

mitkLabelSetImageTest.cpp

O1: MITK Reviewer Group I

autoload/

IO/

mitkLabelSetImageIO.cpp

O1: MITK Reviewer Group I

mitkLabelSetImageIO.h

O1: MITK Reviewer Group I

files.cmake

O1: MITK Reviewer Group I

mitkLabelSet.cpp

O1: MITK Reviewer Group I

mitkLabelSet.h

O1: MITK Reviewer Group I

mitkLabelSetIOHelper.cpp

O1: MITK Reviewer Group I

mitkLabelSetIOHelper.h

O1: MITK Reviewer Group I

mitkLabelSetImageSurfaceStampFilter.cpp

O1: MITK Reviewer Group I

mitkLabelSetImageSurfaceStampFilter.h

O1: MITK Reviewer Group I

Segmentation/

Algorithms/

mitkContourModelSetToImageFilter.cpp

O1: MITK Reviewer Group I

mitkContourUtils.cpp

O1: MITK Reviewer Group I

mitkCorrectorAlgorithm.cpp

O1: MITK Reviewer Group I

mitkCorrectorAlgorithm.h

O1: MITK Reviewer Group I

mitkSurfaceStampImageFilter.cpp

O1: MITK Reviewer Group I

mitkSurfaceStampImageFilter.h

O1: MITK Reviewer Group I

Controllers/

mitkSliceBasedInterpolationController.cpp

O1: MITK Reviewer Group I

mitkSliceBasedInterpolationController.h

O1: MITK Reviewer Group I

Interactions/

mitkContourTool.cpp

O1: MITK Reviewer Group I

mitkContourTool.h

O1: MITK Reviewer Group I

mitkCorrectorTool2D.cpp

O1: MITK Reviewer Group I

mitkFeedbackContourTool.cpp

O1: MITK Reviewer Group I

mitkLiveWireTool2D.cpp

O1: MITK Reviewer Group I

mitkPaintbrushTool.cpp

O1: MITK Reviewer Group I

mitkRegionGrowingTool.cpp

O1: MITK Reviewer Group I

mitkRegionGrowingTool.h

O1: MITK Reviewer Group I

mitkSegTool2D.cpp

O1: MITK Reviewer Group I

mitkSegTool2D.h

O1: MITK Reviewer Group I

mitkSegmentationInteractor.cpp

O1: MITK Reviewer Group I

mitkSegmentationInteractor.h

O1: MITK Reviewer Group I

mitkSetRegionTool.cpp

O1: MITK Reviewer Group I

files.cmake

O1: MITK Reviewer Group I

SegmentationUI/

Qmitk/

QmitkLabelSetWidget.cpp

O1: MITK Reviewer Group I

QmitkLabelSetWidget.h

O1: MITK Reviewer Group I

QmitkLabelSetWidgetControls.ui

O1: MITK Reviewer Group I

QmitkMaskStampWidget.cpp

O1: MITK Reviewer Group I

QmitkMaskStampWidget.h

O1: MITK Reviewer Group I

QmitkMaskStampWidgetGUIControls.ui

O1: MITK Reviewer Group I

QmitkSearchLabelDialog.cpp

O1: MITK Reviewer Group I

QmitkSearchLabelDialog.h

O1: MITK Reviewer Group I

QmitkSearchLabelDialogGUI.ui

O1: MITK Reviewer Group I

QmitkSliceBasedInterpolatorWidget.cpp

O1: MITK Reviewer Group I

QmitkSliceBasedInterpolatorWidget.h

O1: MITK Reviewer Group I

QmitkSliceBasedInterpolatorWidgetGUIControls.ui

O1: MITK Reviewer Group I

QmitkSurfaceBasedInterpolatorWidget.cpp

O1: MITK Reviewer Group I

QmitkSurfaceBasedInterpolatorWidget.h

O1: MITK Reviewer Group I

QmitkSurfaceBasedInterpolatorWidgetGUIControls.ui

O1: MITK Reviewer Group I

QmitkSurfaceStampWidget.cpp

O1: MITK Reviewer Group I

QmitkSurfaceStampWidget.h

O1: MITK Reviewer Group I

QmitkSurfaceStampWidgetGUIControls.ui

O1: MITK Reviewer Group I

files.cmake

O1: MITK Reviewer Group I

resources

O1: MITK Reviewer Group I

AcceptAllInterpolations.png

O1: MITK Reviewer Group I

AcceptCurrentInterpolation.png

O1: MITK Reviewer Group I

AcceptSurfaceInterpolation.png

O1: MITK Reviewer Group I

Accept_48x48.png

O1: MITK Reviewer Group I

AddLayer_48x48.png

O1: MITK Reviewer Group I

AdvancedTools.png

O1: MITK Reviewer Group I

BooleanDifference_48x48.png

O1: MITK Reviewer Group I

BooleanIntersection_48x48.png

O1: MITK Reviewer Group I

BooleanUnion_48x48.png

O1: MITK Reviewer Group I

Cancel_48x48.png

O1: MITK Reviewer Group I

ClearSeeds_48x48.png

O1: MITK Reviewer Group I

CreateMask.png

O1: MITK Reviewer Group I

CreateSurface.png

O1: MITK Reviewer Group I

DeleteLayer_48x48.png

O1: MITK Reviewer Group I

EraseLabel.png

O1: MITK Reviewer Group I

Help_48x48.png

O1: MITK Reviewer Group I

ImportLabelSet_48x48.png

O1: MITK Reviewer Group I

ImportLabeledImage_48x48.png

O1: MITK Reviewer Group I

LockExterior_48x48.png

O1: MITK Reviewer Group I

MergeLabels.png

O1: MITK Reviewer Group I

NewLabel_48x48.png

O1: MITK Reviewer Group I

NextLayer_48x48.png

O1: MITK Reviewer Group I

PreviousLayer_48x48.png

O1: MITK Reviewer Group I

RandomColor.png

O1: MITK Reviewer Group I

RemoveLabel.png

O1: MITK Reviewer Group I

RenameLabel.png

O1: MITK Reviewer Group I

Run_48x48.png

O1: MITK Reviewer Group I

SegmentationInteractor_48x48.png

O1: MITK Reviewer Group I

SegmentationUI.qrc

O1: MITK Reviewer Group I

Start.png

O1: MITK Reviewer Group I

Stop.png

O1: MITK Reviewer Group I

UnlockExterior_48x48.png

O1: MITK Reviewer Group I

invisible.png

O1: MITK Reviewer Group I

lock.png

O1: MITK Reviewer Group I

unlock.png

O1: MITK Reviewer Group I

visible.png

O1: MITK Reviewer Group I

SurfaceInterpolation/

CMakeLists.txt

files.cmake

mitkSurfaceBasedInterpolationController.cpp

mitkSurfaceBasedInterpolationController.h

Plugins/

PluginList.cmake

org.mitk.gui.qt.activelearning

CMakeLists.txt

files.cmake

manifest_headers.cmake

QmitkActiveLearning.cpp

QmitkActiveLearning.h

QmitkActiveLearningControls.ui

org_mitk_gui_qt_activelearning_Activator.cpp

org_mitk_gui_qt_activelearning_Activator.h

org.mitk.gui.qt.multilabelsegmentation

CMakeLists.txt

documentation

UserManual

QmitkSegmentationTechnical.dox

ToolExtensionsGeneralOverview.dox

interactive_segmentation_classes.png

interactive_segmentation_classes.xcf

multilabelsegmentation.png

org_mitk_gui_qt_multilabelsegmentation.dox

org_mitk_gui_qt_segmentation2DInterpolation.png

org_mitk_gui_qt_segmentation3DInterpolationWrongRight.png

org_mitk_gui_qt_segmentationIMGLabelTableMultipleSelectionContextMenu.png

org_mitk_gui_qt_segmentationIMGLabelTableSingleSelectionContextMenu.png

org_mitk_gui_qt_segmentationIMGLiveWireUsage.PNG

org_mitk_gui_qt_segmentationIMGapplication.png

org_mitk_gui_qt_segmentationIMGcorrectionActions.png

org_mitk_gui_qt_segmentationIMGdatamanagerview.png

org_mitk_gui_qt_segmentationIMGiconAddSubtract.png

org_mitk_gui_qt_segmentationIMGiconCorrection.png

org_mitk_gui_qt_segmentationIMGiconFastMarching2D.png

org_mitk_gui_qt_segmentationIMGiconFill.png

org_mitk_gui_qt_segmentationIMGiconFillErase.png

org_mitk_gui_qt_segmentationIMGiconLiveWire.png

org_mitk_gui_qt_segmentationIMGiconPaintWipe.png

org_mitk_gui_qt_segmentationIMGiconRegionGrowing.png

org_mitk_gui_qt_segmentationIMGlabeltable.png

org_mitk_gui_qt_segmentationIMGlayerManager.png

org_mitk_gui_qt_segmentationIMGleakage.png

org_mitk_gui_qt_segmentationIMGsearchlabel.png

org_mitk_gui_qt_segmentationIMGselection.png

org_mitk_gui_qt_segmentationIMGsurfacemask.png

org_mitk_gui_qt_segmentationIMGtoolbar.png

segmentationFromSurfaceBefore.png

doxygen

MultiLabelSegmentationProperties.dox

files.cmake

manifest_headers.cmake

plugin.xml

resources

BooleanDifference_48x48.png

BooleanIntersection_48x48.png

BooleanOperationsWidget.qrc

BooleanOperations_48x48.png

BooleanUnion_48x48.png

ImageMasking_48x48.png

Interactions

ConfigSegmentation.xml

SegmentationInteraction.xml

MorphologicalOperationsWidget.qrc

MorphologicalOperations_48x48.png

MultiLabelSegmentationUtilities.qrc

MultiLabelSegmentationUtilities_48x48.png

NewLabel_48x48.png

NewSegmentationSession_48x48.png

Opening_48x48.png

SurfaceToImage_48x48.png

deformablePlane.png

multilabelsegmentation.png

multilabelsegmentation.qrc

src

QmitkMultiLabelSegmentationPreferencePage.cpp

QmitkMultiLabelSegmentationPreferencePage.h

internal

Common

QmitkDataSelectionWidget.cpp

QmitkDataSelectionWidget.h

QmitkDataSelectionWidgetControls.ui

QmitkAutocropAction.cpp

QmitkAutocropAction.h

QmitkConvertMaskToLabelAction.cpp

QmitkConvertMaskToLabelAction.h

QmitkConvertSurfaceToLabelAction.cpp

QmitkConvertSurfaceToLabelAction.h

QmitkConvertToMultiLabelSegmentationAction.cpp

QmitkConvertToMultiLabelSegmentationAction.h

QmitkCreateMultiLabelPresetAction.cpp

QmitkCreateMultiLabelPresetAction.h

QmitkCreateMultiLabelSegmentationAction.cpp

QmitkCreateMultiLabelSegmentationAction.h

QmitkCreatePolygonModelAction.cpp

QmitkCreatePolygonModelAction.h

QmitkLoadMultiLabelPresetAction.cpp

QmitkLoadMultiLabelPresetAction.h

QmitkMultiLabelSegmentationControls.ui

QmitkMultiLabelSegmentationOrganNamesHandling.cpp

QmitkMultiLabelSegmentationView.cpp

QmitkMultiLabelSegmentationView.h

QmitkThresholdAction.cpp

QmitkThresholdAction.h

SegmentationUtilities

BooleanOperations

QmitkBooleanOperationsWidget.cpp

QmitkBooleanOperationsWidget.h

QmitkBooleanOperationsWidgetControls.ui

ImageMasking

QmitkImageMaskingWidget.cpp

QmitkImageMaskingWidget.h

QmitkImageMaskingWidgetControls.ui

MorphologicalOperations

QmitkMorphologicalOperationsWidget.cpp

QmitkMorphologicalOperationsWidget.h

QmitkMorphologicalOperationsWidgetControls.ui

QmitkMultiLabelSegmentationUtilitiesView.cpp

QmitkMultiLabelSegmentationUtilitiesView.h

QmitkMultiLabelSegmentationUtilitiesViewControls.ui

QmitkSegmentationUtilityWidget.cpp

QmitkSegmentationUtilityWidget.h

SurfaceToImage

QmitkSurfaceToImageWidget.cpp

QmitkSurfaceToImageWidget.h

QmitkSurfaceToImageWidgetControls.ui

mitkPluginActivator.cpp

mitkPluginActivator.h

target_libraries.cmake

rMITK5924a296d2d1

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Modules/Classification/CLActiveLearning/CMakeLists.txt

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Modules/Classification/CLActiveLearning/include/mitkActiveLearningInteractor.h

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Merge branch 'bug-19600-Active-Learning-Module' into bug-19600-master…5924a296d2d1Actions

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rMITK5924a296d2d1

Modules/Classification/CLActiveLearning/CMakeLists.txt

Modules/Classification/CLActiveLearning/files.cmake

Modules/Classification/CLActiveLearning/include/mitkActiveLearningInteractor.h

Modules/Classification/CLActiveLearning/include/mitkActiveLearningSuggestRegion.h

Modules/Classification/CLActiveLearning/include/mitkPredictionUncertaintyFilter.h

Modules/Classification/CLActiveLearning/resource/Interactions/Paint.xml

Modules/Classification/CLActiveLearning/resource/Interactions/PaintConfig.xml

Modules/Classification/CLActiveLearning/src/mitkActiveLearningInteractor.cpp

Modules/Classification/CLActiveLearning/src/mitkActiveLearningSuggestRegion.cpp

Modules/Classification/CLActiveLearning/src/mitkPredictionUncertaintyFilter.cpp

Modules/Classification/CMakeLists.txt

Modules/ContourModel/Algorithms/mitkContourModelUtils.cpp

Modules/ContourModel/Algorithms/mitkContourModelUtils.h

Modules/ContourModel/CMakeLists.txt

Modules/Multilabel/Testing/files.cmake

Modules/Multilabel/Testing/mitkLabelSetImageSurfaceStampFilterTest.cpp

Modules/Multilabel/Testing/mitkLabelSetImageTest.cpp

Modules/Multilabel/autoload/IO/mitkLabelSetImageIO.cpp

Modules/Multilabel/autoload/IO/mitkLabelSetImageIO.h

Modules/Multilabel/files.cmake

Modules/Multilabel/mitkLabelSet.cpp

Modules/Multilabel/mitkLabelSet.h

Modules/Multilabel/mitkLabelSetIOHelper.cpp

Modules/Multilabel/mitkLabelSetIOHelper.h

Modules/Multilabel/mitkLabelSetImageSurfaceStampFilter.cpp

Modules/Multilabel/mitkLabelSetImageSurfaceStampFilter.h

Modules/Segmentation/Algorithms/mitkContourModelSetToImageFilter.cpp

Modules/Segmentation/Algorithms/mitkContourUtils.cpp

Modules/Segmentation/Algorithms/mitkCorrectorAlgorithm.cpp

Modules/Segmentation/Algorithms/mitkCorrectorAlgorithm.h

Modules/Segmentation/Algorithms/mitkSurfaceStampImageFilter.cpp

Modules/Segmentation/Algorithms/mitkSurfaceStampImageFilter.h

Modules/Segmentation/Controllers/mitkSliceBasedInterpolationController.cpp

Modules/Segmentation/Controllers/mitkSliceBasedInterpolationController.h

Modules/Segmentation/Interactions/mitkContourTool.cpp

Modules/Segmentation/Interactions/mitkContourTool.h

Modules/Segmentation/Interactions/mitkCorrectorTool2D.cpp

Modules/Segmentation/Interactions/mitkFeedbackContourTool.cpp

Modules/Segmentation/Interactions/mitkLiveWireTool2D.cpp

Modules/Segmentation/Interactions/mitkPaintbrushTool.cpp

Modules/Segmentation/Interactions/mitkRegionGrowingTool.cpp

Modules/Segmentation/Interactions/mitkRegionGrowingTool.h

Modules/Segmentation/Interactions/mitkSegTool2D.cpp

Modules/Segmentation/Interactions/mitkSegTool2D.h

Modules/Segmentation/Interactions/mitkSegmentationInteractor.cpp

Modules/Segmentation/Interactions/mitkSegmentationInteractor.h

Modules/Segmentation/Interactions/mitkSetRegionTool.cpp

Modules/Segmentation/files.cmake

Modules/SegmentationUI/Qmitk/QmitkLabelSetWidget.cpp

Modules/SegmentationUI/Qmitk/QmitkLabelSetWidget.h

Modules/SegmentationUI/Qmitk/QmitkLabelSetWidgetControls.ui

Modules/SegmentationUI/Qmitk/QmitkMaskStampWidget.cpp

Modules/SegmentationUI/Qmitk/QmitkMaskStampWidget.h

Modules/SegmentationUI/Qmitk/QmitkMaskStampWidgetGUIControls.ui

Modules/SegmentationUI/Qmitk/QmitkSearchLabelDialog.cpp

Modules/SegmentationUI/Qmitk/QmitkSearchLabelDialog.h

Modules/SegmentationUI/Qmitk/QmitkSearchLabelDialogGUI.ui

Modules/SegmentationUI/Qmitk/QmitkSliceBasedInterpolatorWidget.cpp

Modules/SegmentationUI/Qmitk/QmitkSliceBasedInterpolatorWidget.h

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Modules/SegmentationUI/Qmitk/QmitkSurfaceBasedInterpolatorWidget.cpp

Modules/SegmentationUI/Qmitk/QmitkSurfaceBasedInterpolatorWidget.h

Modules/SegmentationUI/Qmitk/QmitkSurfaceBasedInterpolatorWidgetGUIControls.ui

Modules/SegmentationUI/Qmitk/QmitkSurfaceStampWidget.cpp

Modules/SegmentationUI/Qmitk/QmitkSurfaceStampWidget.h

Modules/SegmentationUI/Qmitk/QmitkSurfaceStampWidgetGUIControls.ui

Modules/SegmentationUI/files.cmake

Modules/SegmentationUI/resources/AcceptAllInterpolations.png

Modules/SegmentationUI/resources/AcceptCurrentInterpolation.png

Modules/SegmentationUI/resources/AcceptSurfaceInterpolation.png

Modules/SegmentationUI/resources/Accept_48x48.png

Modules/SegmentationUI/resources/AddLayer_48x48.png

Merge branch 'bug-19600-Active-Learning-Module' into bug-19600-master…
5924a296d2d1
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