Implementation of stitching functionality
Summary:
Restructured the module internal directories to current module convention.
First draft for stitching filter
First working version of itk based stitching filter.
Signed-off-by: Ralf Floca <r.floca@dkfz-heidelberg.de>
Cleaned up obsolete reader preferences in some cmd apps.
Added first draft of helper functions to stitch images on mitk level.
Adde first draft for cmd app to stitch images
Changed test to cover more corner cases
Fixed bug in StitchImagesMiniApp and helper function.
+ Introduced StitchStrategy (Mean, BorderDistance)
Improved stitching mini app handling
Imporved documentation
Signed-off-by: Ralf Floca <r.floca@dkfz-heidelberg.de>
Test Plan: coder review and unit tests
Reviewers: O3 MITK Reviewer Group II, kompan
Reviewed By: O3 MITK Reviewer Group II, kompan
Differential Revision: https://phabricator.mitk.org/D382