Diffusion MITK f44db9ed8748

Make AutoSegmentationTool label aware
f44db9ed8748
Actions

Tags

None

Referenced Files

None

Subscribers

None

Description

Make AutoSegmentationTool label aware

Summary:
Add non const option for mitk::AutoSegmentationTool::GetImageByTimeStep

Added label awareness to AutoSegmentationWithPreviewTool

This implicitly fixes the threshold tools (T29096 and T29097)

Makes picking tool label aware and improves it.

Fixes problems with overwritting other labels.

Now you can also pick from multiple other labels and the picked
elements will be added to the active labels.
Be aware if you pick from other labels the must not be locked,
other wise the lock will be ignored.
If you pick from the active label it is irrelevant if it is locked.

Make AutoMLSegmentationWithPreviewTools label and active label aware.

Fixes T29099

Added documentation and precondition checks

Fixed gcc compile errors

Fixed bug in PointSet::RemovePointAtEnd.

also fixes T29102

Deactivated the possibility to pick background. Also ensured that preview is reset if no points or no valid points are selected.

Test Plan: code review, ui testing/checklists

Reviewers: O1 MITK Reviewer Group I, kalali, O3 MITK Reviewer Group II

Reviewed By: O1 MITK Reviewer Group I, kalali, O3 MITK Reviewer Group II

Subscribers: kalali, kislinsk, s434n

Maniphest Tasks: T29102, T29099, T28526, T29097, T29096, T28982, T28991

Differential Revision: https://phabricator.mitk.org/D622

Details

Provenance

floca	Authored on Apr 13 2022, 12:41 PM
floca	Pushed on Apr 13 2022, 4:16 PM

Reviewer

O1: MITK Reviewer Group I

Differential Revision

Restricted Differential Revision

Parents

rMITKee32bb9512c6: Added ResetReviewContent
rMITKf727ed384450: Remove multilabel documentation page

Branches

Unknown

Tags

Unknown

Tasks

T29102: [3D Segmentation] Picking Tool - Problem deleting picked regions.
T29099: [3D Segmentation] Otsu Tool - Does not handle multiple labels.
T28526: [Segmentation] Check tools (especially 3D tools) to correctly handle updating of LabelSetImage
T29097: [3D Segmentation] UL Threshold Tool - Does not handle multiple labels.
T29096: [3D Segmentation] Threshold Tool - Does not handle multiple labels.
T28982: Weak Label Annotation Picking Tool
T28991: [Segmentation] 3D tools overwrite / remove previous mask if reconfirmed

Event Timeline

kislinsk mentioned this in T29075: 2022 Week 17 (Very Late April).Apr 25 2022, 12:43 PM

floca committed rMITKf44db9ed8748: Make AutoSegmentationTool label aware (authored by floca).Apr 13 2022, 4:17 PM

floca added tasks: T28991: [Segmentation] 3D tools overwrite / remove previous mask if reconfirmed, T28982: Weak Label Annotation Picking Tool, T29096: [3D Segmentation] Threshold Tool - Does not handle multiple labels., T29097: [3D Segmentation] UL Threshold Tool - Does not handle multiple labels., T28526: [Segmentation] Check tools (especially 3D tools) to correctly handle updating of LabelSetImage, T29099: [3D Segmentation] Otsu Tool - Does not handle multiple labels., T29102: [3D Segmentation] Picking Tool - Problem deleting picked regions..Apr 25 2022, 3:24 PM

floca added an edge: Restricted Differential Revision.

Merged Changes

ee32bb9512c6 Added ResetReviewContent
Author
floca
Browse Repository
No Builds
No Audits
04ef3f0c5cde Fixed review remarks
Author
floca
Browse Repository
No Builds
No Audits
f2fc9d8a3b81 Fixed the probelem/bug if active label was changed between
Author
floca
Browse Repository
No Builds
No Audits
636fe05faa33 Fixed review comments
Author
floca
Browse Repository
No Builds
No Audits
e7d9e43da490 Deactivated the possibility to pick background.
Author
floca
Browse Repository
No Builds
No Audits
c042953a0088 Fixed bug in PointSet::RemovePointAtEnd.
Author
floca
Browse Repository
No Builds
No Audits
4e6176508567 Fixed gcc compile errors
Author
floca
Browse Repository
No Builds
No Audits
00d30235b556 Added documentation and precondition checks
Author
floca
Browse Repository
No Builds
No Audits
2db1230de67b Make AutoMLSegmentationWithPreviewTools label and active label aware.
Author
floca
Browse Repository
No Builds
No Audits
d7e8f65fe420 Makes picking tool label aware and improves it.
Author
floca
Browse Repository
No Builds
No Audits
b3cc84fe26ce Added label awareness to AutoSegmentationWithPreviewTool
Author
floca
Browse Repository
No Builds
No Audits
9cfad23a894c Add non const option for mitk::AutoSegmentationTool::GetImageByTimeStep
Author
floca
Browse Repository
No Builds
No Audits

Changes (8)

Path

Size

Packages

Modules/

Core/

src/

DataManagement/

mitkPointSet.cpp

O1: MITK Reviewer Group I

test/

mitkPointSetTest.cpp

O1: MITK Reviewer Group I

Segmentation/

Interactions/

mitkAutoMLSegmentationWithPreviewTool.cpp

O1: MITK Reviewer Group I

mitkAutoSegmentationTool.cpp

O1: MITK Reviewer Group I

mitkAutoSegmentationTool.h

O1: MITK Reviewer Group I

mitkAutoSegmentationWithPreviewTool.cpp

O1: MITK Reviewer Group I

mitkAutoSegmentationWithPreviewTool.h

O1: MITK Reviewer Group I

mitkPickingTool.cpp

O1: MITK Reviewer Group I

rMITKf44db9ed8748

Modules/Core/src/DataManagement/mitkPointSet.cpp

Loading...

Modules/Core/test/mitkPointSetTest.cpp

Loading...

Modules/Segmentation/Interactions/mitkAutoMLSegmentationWithPreviewTool.cpp

Loading...

Modules/Segmentation/Interactions/mitkAutoSegmentationTool.cpp

Loading...

Modules/Segmentation/Interactions/mitkAutoSegmentationTool.h

Loading...

Modules/Segmentation/Interactions/mitkAutoSegmentationWithPreviewTool.cpp

Loading...

Modules/Segmentation/Interactions/mitkAutoSegmentationWithPreviewTool.h

Loading...

Modules/Segmentation/Interactions/mitkPickingTool.cpp

Loading...