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Maniphest T29099

[3D Segmentation] Otsu Tool - Does not handle multiple labels.
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Description

  1. Create A New Label. (Lets call this "Label A").
  2. Use Otsu Tool to create candidate regions.
  3. Pick one region as the label.
  4. Create new Label.
  5. Pick a different region as label from the Otsu candidates.
  6. Click Confirm Segmentation.

"Label A" is no longer displayed.

Revisions and Commits

Restricted Differential Revision
rMITK MITK
Restricted Differential RevisionrMITKf97486ba8334 Removed m_SpacingNodes out of dataStorage upon closing of IGT…
Restricted Differential RevisionrMITKc192e5c8a143 Show interpolator only if valid data was selected
Restricted Differential RevisionrMITKa761c112ae54 Simplify volume rendering
Restricted Differential RevisionrMITK3830dafcd734 Merge remote-tracking branch 'Alfred-Franz/T27260…
Restricted Differential RevisionrMITK1e08152896c2 Make background of help search results browser white
Restricted Differential RevisionrMITK827c3bebc9dc Improve label set color table with distinctive colors
Restricted Differential RevisionrMITK27b96239f36c Fixed T29062
Restricted Differential RevisionrMITK6dcbff22f6b8 Merge branch 'release/T29075-v2022.04' of https://phabricator.mitk.
Restricted Differential RevisionrMITK2ef49f51d547 Completely remove Fast Marching and Watershed tools
Restricted Differential RevisionrMITK6332e7e4a4b1 Add default labelset preset setting to segmentation preferences
AuditedRestricted Differential RevisionrMITK99c7cd50740b Add Segmentation.labelSetPreset command-line argument
Restricted Differential RevisionrMITKae5d84e547d6 Migrate segmentation preferences to .ui file
Restricted Differential RevisionrMITK048ae9d92f3e Show hint if the label set preset is overriden by command-line argument
Restricted Differential RevisionrMITKb73c37478dbe Improved generic naming and coloring of newly created labels
Restricted Differential RevisionrMITKce753d0b4e25 Improve language in message box when removing selected labels
Restricted Differential RevisionrMITK9cfad23a894c Add non const option for mitk::AutoSegmentationTool::GetImageByTimeStep
Restricted Differential RevisionrMITKb3cc84fe26ce Added label awareness to AutoSegmentationWithPreviewTool
Restricted Differential RevisionrMITKd7e8f65fe420 Makes picking tool label aware and improves it.
Restricted Differential RevisionrMITK2db1230de67b Make AutoMLSegmentationWithPreviewTools label and active label aware.
Restricted Differential RevisionrMITK00d30235b556 Added documentation and precondition checks
Restricted Differential RevisionrMITKc042953a0088 Fixed bug in PointSet::RemovePointAtEnd.
Restricted Differential RevisionrMITK4e6176508567 Fixed gcc compile errors
Restricted Differential RevisionrMITKe7d9e43da490 Deactivated the possibility to pick background.
Restricted Differential RevisionrMITK636fe05faa33 Fixed review comments
Restricted Differential RevisionrMITKf2fc9d8a3b81 Fixed the probelem/bug if active label was changed between
Restricted Differential RevisionrMITKf44db9ed8748 Make AutoSegmentationTool label aware
Restricted Differential RevisionrMITKee32bb9512c6 Added ResetReviewContent
Restricted Differential RevisionrMITK04ef3f0c5cde Fixed review remarks

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Event Timeline

• s349i created this task.Mar 30 2022, 4:00 PM
kislinsk triaged this task as High priority.Apr 1 2022, 9:33 AM
kislinsk added a parent task: T29087: [Segmentation] Some AutoTools confirm objects to the first Label instead of selected and/or completely override existing segmentations.
floca added a revision: Restricted Differential Revision.Apr 5 2022, 5:40 PM
floca added a revision: Restricted Differential Revision.Apr 5 2022, 5:56 PM
floca claimed this task.Apr 6 2022, 10:56 AM
floca added a revision: Restricted Differential Revision.Apr 6 2022, 6:48 PM
kalali added a subscriber: kalali.Apr 9 2022, 10:45 AM

I tested this with the related review and the differential solves this issue.

floca moved this task from Backlog to Cycle on the MITK (v2022.04) board.Apr 13 2022, 10:45 AM
floca closed this task as Resolved.Apr 13 2022, 4:22 PM
kislinsk mentioned this in T29075: 2022 Week 17 (Very Late April).Apr 25 2022, 12:43 PM
floca added a commit: rMITK04ef3f0c5cde: Fixed review remarks.Apr 25 2022, 3:24 PM
floca added a commit: rMITKee32bb9512c6: Added ResetReviewContent.
floca added a commit: rMITKf44db9ed8748: Make AutoSegmentationTool label aware.
floca added a commit: rMITKf2fc9d8a3b81: Fixed the probelem/bug if active label was changed between.
floca added a commit: rMITK636fe05faa33: Fixed review comments.
floca added a commit: rMITKe7d9e43da490: Deactivated the possibility to pick background..
floca added a commit: rMITKc042953a0088: Fixed bug in PointSet::RemovePointAtEnd..
floca added a commit: rMITK4e6176508567: Fixed gcc compile errors.
floca added a commit: rMITK00d30235b556: Added documentation and precondition checks.
floca added a commit: rMITK2db1230de67b: Make AutoMLSegmentationWithPreviewTools label and active label aware..
floca added a commit: rMITKd7e8f65fe420: Makes picking tool label aware and improves it..
floca added a commit: rMITKb3cc84fe26ce: Added label awareness to AutoSegmentationWithPreviewTool.
floca added a commit: rMITK9cfad23a894c: Add non const option for mitk::AutoSegmentationTool::GetImageByTimeStep.
kislinsk added a commit: rMITKce753d0b4e25: Improve language in message box when removing selected labels.Apr 25 2022, 3:25 PM
kislinsk added a commit: rMITKb73c37478dbe: Improved generic naming and coloring of newly created labels.
kislinsk added a commit: rMITK048ae9d92f3e: Show hint if the label set preset is overriden by command-line argument.
kislinsk added a commit: rMITKae5d84e547d6: Migrate segmentation preferences to .ui file.
kislinsk added a commit: rMITK99c7cd50740b: Add Segmentation.labelSetPreset command-line argument.
kislinsk added a commit: rMITK6332e7e4a4b1: Add default labelset preset setting to segmentation preferences.
kislinsk added a commit: rMITK2ef49f51d547: Completely remove Fast Marching and Watershed tools.
floca added a commit: rMITK6dcbff22f6b8: Merge branch 'release/T29075-v2022.04' of https://phabricator.mitk..Apr 25 2022, 3:25 PM
floca added a commit: rMITK27b96239f36c: Fixed T29062.
kislinsk added a commit: rMITK827c3bebc9dc: Improve label set color table with distinctive colors.Apr 25 2022, 3:25 PM
kislinsk added a commit: rMITK1e08152896c2: Make background of help search results browser white.
kislinsk added a commit: rMITK3830dafcd734: Merge remote-tracking branch 'Alfred-Franz/T27260….
kislinsk added a commit: rMITKa761c112ae54: Simplify volume rendering.
kalali added a commit: rMITKc192e5c8a143: Show interpolator only if valid data was selected.Apr 25 2022, 3:25 PM
kannberg added a commit: rMITKf97486ba8334: Removed m_SpacingNodes out of dataStorage upon closing of IGT….Apr 25 2022, 3:25 PM
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