The itkTensorReconstructionWithEigenvalueCorrectionFilter produces for some datasets -nan entries in the tensor variable during computation, concretely in this function
l.336: CalculateTensor(pseudoInverse,atten,tensor,nof,numberb0);
the tensor is compueted completely there so it is possible the source for the nan entries is somewhat else.
Related QuickFix:
For the crash in tensor reconstruction ( T13232 ) the nan values are catched and the corresponding voxel marked as bad.