User wirkert has pushed new remote branch:

bug-19094-integrationbranch

[c8fdd3]: Merge branch 'bug-19094-integrationbranch'

Merged commits:

2015-05-22 14:53:06 Sebastian Wirkert [3a7b20]
deleted some obsolete python files

2015-05-11 17:45:42 Sebastian Wirkert [e8899d]
Enhanced reflectance display plugin. Now multiple images can be selected
and reflectance for each selected image will be plotted.

2015-05-06 11:46:44 Sebastian Wirkert [356b68]
Nicer logos for the plugins

2015-04-28 17:58:37 Sebastian Wirkert [207070]
Merge remote-tracking branch 'origin/bug-18740-v2_evaluation_restructuring' into demoBranch

2015-04-28 17:57:32 Sebastian Wirkert [5c7964]
Merge branch 'bug-18763-Implementation_of_spectrocam' into demoBranch

2015-04-28 17:44:19 Sebastian Wirkert [e7a456]
First Version which can record images.

2015-04-28 11:07:07 Sebastian Wirkert [e2172b]
First version with a (not working but completely programmed) oxygenation estimation.

2015-04-23 14:31:01 Sebastian Wirkert [00a1e3]
Removed random factor from color selection in multispectral plotting tool.

2015-04-23 11:55:39 Sebastian Wirkert [07d404]
Merge remote-tracking branch 'origin/bug-18943-ReflectancePlot' into bug-18740-v2_evaluation_restructuring

2015-04-23 11:54:16 Sebastian Wirkert [05215c]
Merge branch 'bug-18740-evaluation_restructuring' into bug-18740-v2_evaluation_restructuring

2015-04-23 11:50:31 Sebastian Wirkert [620d6d]
New folder structures + first dummy tests.
New sitk image reader added.

2015-04-22 16:53:05 Sebastian Wirkert [57caa3]
safety checkin. First, way to slow version of image saver.

2015-04-22 14:37:52 Sebastian Wirkert [df9219]
Version with nice and uncomplicated displaying

2015-04-21 11:47:33 Sebastian Wirkert [9b2480]
First working version!

2015-04-20 17:52:01 Sebastian Wirkert [1cc4c0]
Added plugin, does not work yet due to linking issues with additional_libraries

2015-04-20 11:33:16 Sebastian Wirkert [778b4c]
Changes to make Justins code runnable.

2015-04-17 13:21:10 unknown [bed1a0]
Merge remote-tracking branch 'origin/bug-18763-v2_ImplementationOfSpectroCam' into bug-18763-Implementation_of_spectrocam

2015-04-15 13:30:09 Yan Zhang [8371ab]
The multispectral plugin.

2015-04-07 11:50:58 Sebastian Wirkert [83e5d8]
Merge branch 'bug-18763-v2_ImplementationOfSpectroCam' of mitk.org:MITK into bug-18763-v2_ImplementationOfSpectroCam

2015-04-07 11:48:43 Sebastian Wirkert [495cb4]
Merge remote-tracking branch 'origin/bug-18763-ImplementationOfSpectroCam' into bug-18763-v2_ImplementationOfSpectroCam

Conflicts:
Modules/ModuleList.cmake

2015-04-07 11:48:25 Sebastian Wirkert [e7532d]
Merge remote-tracking branch 'origin/bug-18763-ImplementationOfSpectroCam' into bug-18763-v2_ImplementationOfSpectroCam

Conflicts:
Modules/ModuleList.cmake

2015-03-27 14:56:31 Sebastian Wirkert [ae5134]
Big checkin of stress phase before holiday. This stuff needs to be verified and tested!

Conflicts:
Modules/Biophotonics/python/inverseMonteCarlo/setup/data.py

2015-03-27 14:43:44 Sebastian Wirkert [7db81b]
Some ugly changes to test if system works better without 700nm band.
Probably needs to be reverted later.

2015-02-27 16:43:04 Justin Iszatt [af77d7]
Created module BiophotonicsHardware
and submodule SpectroCam with necessary CMake-Files

Started implementing SpectroCamController and SpectroCamRecorder

2015-02-26 17:42:21 Sebastian Wirkert [efbe7b]
Switched to normalization by dividing by integral. Also, done some refactoring.

2015-02-25 17:01:39 Sebastian Wirkert [d4352e]

1. Evaluation for Real Images now working
2. Set Submucosal SaO2 equal to SaO2
3. Removed PCA as preprocessing step
4. Changed Grid Search for RF

2015-02-25 10:47:50 Sebastian Wirkert [4675c3]
first preliminary changes.

2015-02-25 08:46:11 Sebastian Wirkert [4a3712]
Included r2Score in the parameters given back from optimization and random forests.
Experimentally included PCA as preprocessing step for random forests
Preparations for regression on real images

2015-02-24 10:32:14 Sebastian Wirkert [b387b4]
Fixed error in random forest evaluation: testing was done on training parameters
Furthermore returning the forest now in method signature.

2015-02-24 10:06:32 Sebastian Wirkert [b76587]
Two major changes:

1. switched out all the data for the new training / testing data
2. altered concept for calling optimization / random forests. Now both are encapsuled in functions. This will enable us calling them automatically with different train/testdata, which is necessary for the paper evaluations.

2015-02-24 09:33:16 Sebastian Wirkert [623f53]
forgot to reset haemoglobin reference path after fiddeling around with software.
Now back to normal.

2015-02-24 09:32:32 Sebastian Wirkert [269bbb]
Small cosmetic changes

2015-02-22 15:32:08 Sebastian Wirkert [cb4627]
first version of script that estimates the parameters for real images.

2015-02-22 15:31:24 Sebastian Wirkert [21f89f]
switched the order of parameters from
BVF, Vs, d, r, SaO2
to
BVF, Vs, d, SaO2, r
since r is not estimated in our code, SaO2 is. Now parameters[0:4] gives all the
estimated parameters.

2015-02-22 15:29:32 Sebastian Wirkert [c05c74]
fixed error in accounting for FWHM for absorption. This was not done
correctly before. TODO: look over the normalization to 1 before the
convolution. How can we explain this mathematically?

2015-02-22 15:28:24 Sebastian Wirkert [af6333]
switched default image quotient band to 1

2015-02-22 15:27:50 Sebastian Wirkert [0d7c1a]
itk and python define shape in inverse order. Corrected the conversion.

2015-02-19 11:46:36 Sebastian Wirkert [f4300c]
Changed filename of output files and some tweaking.

2015-02-18 17:34:30 Sebastian Wirkert [a2f92b]

1. parameter search for domain adaption weight determination.
2. refactoring
3. tidying up (documentation etc.)

User wirkert has pushed new remote branch:

bug-19094-exclude_SpectroCam_from_build_all

[7969fe]: COMP: Merge branch 'bug-19094-exclude_SpectroCam_from_build_all'

Merged commits:

2015-05-22 16:53:55 Sebastian Wirkert [08db9d]
Added SpectroCam to exclude list of build all (hardware dependent).